Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46627 * 2 1 4 4 C 1.53000 * 109.47019 * 119.99775 * 2 1 3 5 5 C 1.52996 * 109.47506 * 65.00417 * 4 2 1 6 6 O 1.42893 * 109.47606 * 180.02562 * 5 4 2 7 7 C 1.35890 * 117.00066 * 180.02562 * 6 5 4 8 8 C 1.38871 * 120.01604 * 359.71575 * 7 6 5 9 9 C 1.38215 * 120.11114 * 179.74806 * 8 7 6 10 10 C 1.38119 * 120.13775 * 0.56263 * 9 8 7 11 11 C 1.39065 * 120.02311 * 359.69136 * 10 9 8 12 12 N 1.39508 * 120.05393 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00003 * 213.40365 * 12 11 10 14 14 O 1.21741 * 119.99736 * 5.27005 * 13 12 11 15 15 C 1.46159 * 120.00071 * 185.27436 * 13 12 11 16 16 H 1.08007 * 120.00198 * 0.02562 * 15 13 12 17 17 C 1.40124 * 119.99948 * 179.97438 * 15 13 12 18 18 N 1.30630 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86810 * 119.99915 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46704 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46805 * 120.00073 * 19 17 15 22 22 H 1.48494 * 109.46955 * 240.00112 * 19 17 15 23 23 C 1.38536 * 120.01309 * 180.02562 * 7 6 5 24 24 H 1.09011 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47519 * 300.00116 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00635 * 1 2 3 27 27 H 1.09001 * 109.47519 * 239.99884 * 2 1 3 28 28 H 1.09008 * 109.46751 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47298 * 299.99247 * 3 2 1 30 30 H 1.08993 * 109.47225 * 60.00564 * 3 2 1 31 31 H 1.09000 * 109.47451 * 304.99882 * 4 2 1 32 32 H 1.09006 * 109.47053 * 185.00235 * 4 2 1 33 33 H 1.09009 * 109.47132 * 59.99357 * 5 4 2 34 34 H 1.09001 * 109.47016 * 300.00412 * 5 4 2 35 35 H 1.07998 * 119.94193 * 0.02562 * 8 7 6 36 36 H 1.08002 * 119.93386 * 180.27429 * 9 8 7 37 37 H 1.07996 * 119.99161 * 179.72471 * 10 9 8 38 38 H 0.97007 * 120.00086 * 33.39834 * 12 11 10 39 39 H 0.97003 * 119.99877 * 179.97438 * 18 17 15 40 40 H 1.07990 * 120.06602 * 359.94613 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 8 2.1111 -2.8689 2.3551 7 6 1.8347 -4.1954 2.4577 8 6 1.1144 -4.8344 1.4569 9 6 0.8368 -6.1847 1.5567 10 6 1.2644 -6.9011 2.6574 11 6 1.9816 -6.2659 3.6654 12 7 2.4144 -6.9890 4.7771 13 6 2.4799 -6.3936 5.9846 14 8 2.0716 -5.2553 6.1248 15 6 3.0412 -7.1146 7.1254 16 1 3.4038 -8.1243 7.0008 17 6 3.1098 -6.4954 8.3805 18 7 2.6716 -5.2740 8.5311 19 14 3.8278 -7.4165 9.8385 20 1 4.2502 -8.7733 9.4073 21 1 5.0035 -6.6755 10.3617 22 1 2.8011 -7.5327 10.9049 23 6 2.2659 -4.9096 3.5637 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0700 -2.6550 0.3003 34 1 0.5490 -2.2724 1.1421 35 1 0.7746 -4.2762 0.5971 36 1 0.2802 -6.6796 0.7746 37 1 1.0423 -7.9551 2.7350 38 1 2.6680 -7.9204 4.6812 39 1 2.7188 -4.8455 9.4001 40 1 2.8226 -4.4134 4.3447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133446796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -72.959562 kcal Electronic energy + Delta-G solvation = -20742.728031 eV Core-core repulsion = 17521.945926 eV Total energy + Delta-G solvation = -3220.782106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.78113 -38.31947 -36.84349 -35.96898 -33.26481 -32.38701 -30.58076 -29.03578 -28.51742 -27.38994 -26.22972 -23.81895 -22.31723 -21.39863 -20.16408 -19.69011 -17.85201 -17.23318 -16.08913 -15.76792 -15.43760 -15.35068 -15.03954 -14.62349 -14.12629 -13.99033 -13.77788 -13.20912 -12.84517 -12.66128 -12.54051 -12.42411 -12.26858 -11.85317 -11.64541 -11.33813 -11.22590 -11.16027 -11.04243 -11.00028 -10.86176 -10.65862 -10.41425 -10.38938 -10.29843 -9.26774 -8.87690 -7.89350 -7.59211 -7.10354 -6.32961 -4.80578 2.00625 2.04864 3.07341 3.15424 3.20001 3.45782 4.00685 4.25956 4.56894 4.62391 4.65982 4.68843 4.81901 5.07390 5.21559 5.28732 5.38053 5.42322 5.45213 5.56442 5.60337 5.66555 5.68260 5.74181 5.81766 5.84386 5.94899 6.03032 6.13650 6.19151 6.19845 6.55462 6.86530 6.93426 7.10429 7.16212 7.30375 7.75582 7.90902 8.08866 8.19448 8.86532 9.23127 10.40440 10.58547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003504 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.603283 B = 7989.764545 C = 8992.008974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.116 4.116 5 C 0.061 3.939 6 O -0.315 6.315 7 C 0.146 3.854 8 C -0.255 4.255 9 C -0.064 4.064 10 C -0.211 4.211 11 C 0.229 3.771 12 N -0.698 5.698 13 C 0.541 3.459 14 O -0.555 6.555 15 C -0.538 4.538 16 H 0.073 0.927 17 C 0.086 3.914 18 N -0.758 5.758 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.163 4.163 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.395 0.605 39 H 0.271 0.729 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 5.282 -15.623 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.015 4.015 6 O -0.229 6.229 7 C 0.100 3.900 8 C -0.275 4.275 9 C -0.083 4.083 10 C -0.233 4.233 11 C 0.129 3.871 12 N -0.341 5.341 13 C 0.347 3.653 14 O -0.436 6.436 15 C -0.574 4.574 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.386 5.386 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.185 4.185 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.228 0.772 39 H 0.082 0.918 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.121 6.380 -15.132 16.559 hybrid contribution 0.238 -1.016 0.469 1.144 sum -1.883 5.364 -14.664 15.727 Atomic orbital electron populations 1.21948 0.95110 1.02062 1.01926 1.21035 0.96038 0.96359 0.97712 1.21822 1.01110 0.95572 1.01863 1.21617 1.02191 0.92829 0.98759 1.22777 0.98886 0.92599 0.87208 1.86063 1.74561 1.19716 1.42528 1.18769 0.94775 0.82290 0.94162 1.20920 1.09193 0.96323 1.01025 1.20498 0.97828 0.93179 0.96816 1.20796 1.04950 1.00423 0.97119 1.17610 0.91166 0.91136 0.87189 1.44204 1.68393 1.14342 1.07182 1.18430 0.79429 0.86785 0.80630 1.90662 1.50913 1.18974 1.83095 1.20886 1.42350 1.01442 0.92694 0.90916 1.25756 0.93558 0.94516 0.99731 1.69999 1.33176 1.11391 1.24043 0.86225 0.79049 0.80276 0.80736 1.18640 1.19991 1.20013 1.20499 1.06366 0.93712 0.97912 0.92403 0.92353 0.92685 0.91049 0.92533 0.92627 0.92452 0.90670 0.90820 0.92542 0.92170 0.86645 0.86570 0.86456 0.77160 0.91771 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 2 C -0.09 -0.81 2.92 -90.62 -0.26 -1.07 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C -0.12 -1.30 5.05 -26.73 -0.14 -1.44 16 5 C 0.06 0.80 4.49 37.16 0.17 0.97 16 6 O -0.31 -5.82 10.13 -19.39 -0.20 -6.01 16 7 C 0.15 2.88 6.68 -39.24 -0.26 2.61 16 8 C -0.25 -4.23 9.04 -39.36 -0.36 -4.59 16 9 C -0.06 -1.03 10.03 -39.63 -0.40 -1.42 16 10 C -0.21 -3.78 9.96 -39.32 -0.39 -4.18 16 11 C 0.23 4.99 6.27 -83.80 -0.53 4.46 16 12 N -0.70 -16.05 5.32 -11.21 -0.06 -16.11 16 13 C 0.54 15.24 7.47 -13.08 -0.10 15.14 16 14 O -0.56 -17.71 12.70 5.15 0.07 -17.64 16 15 C -0.54 -14.80 9.54 -35.70 -0.34 -15.14 16 16 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 17 C 0.09 2.33 5.50 -17.36 -0.10 2.23 16 18 N -0.76 -22.26 11.82 55.55 0.66 -21.60 16 19 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.16 -3.76 8.59 -39.21 -0.34 -4.10 16 24 H 0.06 0.49 6.57 -51.92 -0.34 0.15 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.67 7.67 -51.92 -0.40 0.27 16 34 H 0.06 0.75 6.07 -51.93 -0.32 0.43 16 35 H 0.12 1.57 6.29 -52.49 -0.33 1.24 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.39 7.67 8.79 -40.82 -0.36 7.31 16 39 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 40 H 0.15 3.85 6.41 -52.49 -0.34 3.52 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -33.41 333.75 -7.75 -41.15 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.85 Total: 8.82 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.36 Total: -8.24 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.60 Total: -37.70 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.13 Total: -23.66 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.41 -7.75 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133446796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.808 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds