Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46627 * 2 1 4 4 C 1.53000 * 109.47019 * 119.99775 * 2 1 3 5 5 C 1.52996 * 109.47506 * 65.00417 * 4 2 1 6 6 O 1.42893 * 109.47606 * 180.02562 * 5 4 2 7 7 C 1.35890 * 117.00066 * 180.02562 * 6 5 4 8 8 C 1.38871 * 120.01604 * 359.71575 * 7 6 5 9 9 C 1.38215 * 120.11114 * 179.74806 * 8 7 6 10 10 C 1.38119 * 120.13775 * 0.56263 * 9 8 7 11 11 C 1.39065 * 120.02311 * 359.69136 * 10 9 8 12 12 N 1.39508 * 120.05393 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00003 * 213.40365 * 12 11 10 14 14 O 1.21741 * 119.99736 * 5.27005 * 13 12 11 15 15 C 1.46159 * 120.00071 * 185.27436 * 13 12 11 16 16 H 1.08007 * 120.00198 * 0.02562 * 15 13 12 17 17 C 1.40124 * 119.99948 * 179.97438 * 15 13 12 18 18 N 1.30630 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86810 * 119.99915 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46704 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46805 * 120.00073 * 19 17 15 22 22 H 1.48494 * 109.46955 * 240.00112 * 19 17 15 23 23 C 1.38536 * 120.01309 * 180.02562 * 7 6 5 24 24 H 1.09011 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47519 * 300.00116 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00635 * 1 2 3 27 27 H 1.09001 * 109.47519 * 239.99884 * 2 1 3 28 28 H 1.09008 * 109.46751 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47298 * 299.99247 * 3 2 1 30 30 H 1.08993 * 109.47225 * 60.00564 * 3 2 1 31 31 H 1.09000 * 109.47451 * 304.99882 * 4 2 1 32 32 H 1.09006 * 109.47053 * 185.00235 * 4 2 1 33 33 H 1.09009 * 109.47132 * 59.99357 * 5 4 2 34 34 H 1.09001 * 109.47016 * 300.00412 * 5 4 2 35 35 H 1.07998 * 119.94193 * 0.02562 * 8 7 6 36 36 H 1.08002 * 119.93386 * 180.27429 * 9 8 7 37 37 H 1.07996 * 119.99161 * 179.72471 * 10 9 8 38 38 H 0.97007 * 120.00086 * 33.39834 * 12 11 10 39 39 H 0.97003 * 119.99877 * 179.97438 * 18 17 15 40 40 H 1.07990 * 120.06602 * 359.94613 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 8 2.1111 -2.8689 2.3551 7 6 1.8347 -4.1954 2.4577 8 6 1.1144 -4.8344 1.4569 9 6 0.8368 -6.1847 1.5567 10 6 1.2644 -6.9011 2.6574 11 6 1.9816 -6.2659 3.6654 12 7 2.4144 -6.9890 4.7771 13 6 2.4799 -6.3936 5.9846 14 8 2.0716 -5.2553 6.1248 15 6 3.0412 -7.1146 7.1254 16 1 3.4038 -8.1243 7.0008 17 6 3.1098 -6.4954 8.3805 18 7 2.6716 -5.2740 8.5311 19 14 3.8278 -7.4165 9.8385 20 1 4.2502 -8.7733 9.4073 21 1 5.0035 -6.6755 10.3617 22 1 2.8011 -7.5327 10.9049 23 6 2.2659 -4.9096 3.5637 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0700 -2.6550 0.3003 34 1 0.5490 -2.2724 1.1421 35 1 0.7746 -4.2762 0.5971 36 1 0.2802 -6.6796 0.7746 37 1 1.0423 -7.9551 2.7350 38 1 2.6680 -7.9204 4.6812 39 1 2.7188 -4.8455 9.4001 40 1 2.8226 -4.4134 4.3447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133446796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -94.914013 kcal Electronic energy + Delta-G solvation = -20743.680048 eV Core-core repulsion = 17521.945926 eV Total energy + Delta-G solvation = -3221.734122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26326 -39.97797 -38.22349 -37.16055 -35.13388 -34.47016 -31.81975 -30.54599 -29.86238 -28.23077 -28.03207 -24.95433 -23.86725 -22.93310 -21.46687 -20.92283 -19.60899 -18.92082 -17.63406 -17.16755 -17.00358 -16.84341 -16.43352 -15.95301 -15.61647 -15.23351 -14.78558 -14.62838 -14.45075 -14.20061 -14.02232 -13.61984 -13.24652 -13.09764 -12.96776 -12.80432 -12.72464 -12.66792 -12.55095 -12.14736 -11.99844 -11.85373 -11.75173 -11.52854 -11.42991 -11.06476 -10.78803 -9.95702 -9.22942 -8.77903 -8.38240 -6.97051 0.48852 0.57500 1.38746 1.39174 1.57833 2.16424 2.23950 2.36699 2.88922 3.00244 3.56714 3.82844 3.84866 3.99558 4.03494 4.17217 4.22383 4.34581 4.40272 4.43458 4.57413 4.69663 4.74735 4.79660 4.88237 4.93100 5.00522 5.07186 5.07919 5.23780 5.26844 5.40421 5.42098 5.47001 5.49942 5.53320 5.72161 5.78985 6.15791 6.32028 6.59551 6.75805 7.32489 8.33828 8.55688 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003504 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.603283 B = 7989.764545 C = 8992.008974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.053 3.947 6 O -0.344 6.344 7 C 0.137 3.863 8 C -0.240 4.240 9 C -0.048 4.048 10 C -0.204 4.204 11 C 0.197 3.803 12 N -0.692 5.692 13 C 0.526 3.474 14 O -0.607 6.607 15 C -0.564 4.564 16 H 0.096 0.904 17 C 0.026 3.974 18 N -0.815 5.815 19 Si 1.005 2.995 20 H -0.243 1.243 21 H -0.269 1.269 22 H -0.267 1.267 23 C -0.205 4.205 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.147 0.853 38 H 0.410 0.590 39 H 0.277 0.723 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 3.648 -18.006 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.021 4.021 6 O -0.259 6.259 7 C 0.092 3.908 8 C -0.259 4.259 9 C -0.067 4.067 10 C -0.226 4.226 11 C 0.099 3.901 12 N -0.336 5.336 13 C 0.333 3.667 14 O -0.492 6.492 15 C -0.599 4.599 16 H 0.114 0.886 17 C -0.190 4.190 18 N -0.444 5.444 19 Si 0.824 3.176 20 H -0.166 1.166 21 H -0.194 1.194 22 H -0.192 1.192 23 C -0.227 4.227 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.165 0.835 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.888 4.720 -17.585 18.435 hybrid contribution 0.433 -0.415 1.023 1.186 sum -2.455 4.305 -16.562 17.288 Atomic orbital electron populations 1.21961 0.94651 1.02160 1.02347 1.21020 0.96355 0.96594 0.96514 1.21828 1.01165 0.95042 1.02347 1.21662 1.01853 0.91988 0.99754 1.23149 0.99705 0.93137 0.86126 1.86045 1.75103 1.19525 1.45243 1.18855 0.95055 0.82899 0.94023 1.21368 1.06901 0.97005 1.00675 1.21111 0.96093 0.92702 0.96760 1.21132 1.03354 1.01899 0.96168 1.17917 0.93232 0.90908 0.88089 1.43731 1.68485 1.14938 1.06480 1.18832 0.79085 0.86365 0.82449 1.90621 1.53055 1.21085 1.84455 1.21449 1.42678 1.02536 0.93269 0.88634 1.27091 0.93274 0.95273 1.03356 1.70176 1.34982 1.13871 1.25372 0.84864 0.78050 0.79150 0.75574 1.16607 1.19384 1.19171 1.20293 1.08770 0.95066 0.98569 0.92450 0.93164 0.91088 0.89715 0.92531 0.91091 0.93032 0.92202 0.91418 0.90431 0.90993 0.82719 0.81286 0.83503 0.75351 0.91259 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.95 71.98 0.64 -1.61 16 2 C -0.09 -1.35 2.92 -10.79 -0.03 -1.38 16 3 C -0.15 -2.06 9.19 71.98 0.66 -1.40 16 4 C -0.11 -2.55 5.05 30.59 0.15 -2.40 16 5 C 0.05 1.35 4.49 71.98 0.32 1.67 16 6 O -0.34 -13.19 10.13 -92.31 -0.94 -14.12 16 7 C 0.14 5.53 6.68 22.49 0.15 5.68 16 8 C -0.24 -7.26 9.04 22.42 0.20 -7.06 16 9 C -0.05 -1.33 10.03 22.24 0.22 -1.11 16 10 C -0.20 -6.86 9.96 22.44 0.22 -6.64 16 11 C 0.20 8.81 6.27 38.29 0.24 9.05 16 12 N -0.69 -33.09 5.32 -307.59 -1.64 -34.72 16 13 C 0.53 31.36 7.47 86.30 0.64 32.00 16 14 O -0.61 -41.77 12.70 -4.48 -0.06 -41.83 16 15 C -0.56 -31.97 9.54 24.79 0.24 -31.73 16 16 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 17 C 0.03 1.45 5.50 85.33 0.47 1.92 16 18 N -0.82 -50.29 11.82 21.85 0.26 -50.03 16 19 Si 1.01 40.67 29.56 68.60 2.03 42.70 16 20 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.20 -10.11 8.59 22.51 0.19 -9.92 16 24 H 0.06 0.84 6.57 -2.38 -0.02 0.82 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.63 7.67 -2.38 -0.02 1.62 16 34 H 0.07 1.65 6.07 -2.39 -0.01 1.63 16 35 H 0.16 3.45 6.29 -2.91 -0.02 3.43 16 36 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.41 16.20 8.79 -92.70 -0.82 15.38 16 39 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 40 H 0.09 5.31 6.41 -2.92 -0.02 5.29 16 Total: -1.00 -80.40 333.75 4.22 -76.18 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.23 Total: 34.74 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.34 Total: -12.92 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.38 Total: -84.75 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.99 Total: -55.95 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -80.40 4.22 -76.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133446796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.735 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds