Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09003 * 109.46814 * 30.00042 * 6 5 2 8 8 C 1.50696 * 109.47083 * 269.99993 * 6 5 2 9 9 O 1.21296 * 119.99926 * 354.99399 * 8 6 5 10 10 N 1.34772 * 119.99749 * 175.00246 * 8 6 5 11 11 C 1.37102 * 119.99852 * 179.97438 * 10 8 6 12 12 H 1.08006 * 119.99999 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00143 * 179.97438 * 11 10 8 14 14 N 1.31418 * 120.00406 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00229 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47457 * 89.99192 * 15 13 11 17 17 H 1.48497 * 109.47195 * 210.00154 * 15 13 11 18 18 H 1.48508 * 109.46704 * 329.99466 * 15 13 11 19 19 C 1.50697 * 109.47146 * 149.99537 * 6 5 2 20 20 C 1.38240 * 119.99659 * 39.72826 * 19 6 5 21 21 C 1.38240 * 119.99557 * 179.80922 * 20 19 6 22 22 C 1.38231 * 120.00146 * 0.39581 * 21 20 19 23 23 C 1.38234 * 120.00187 * 359.85586 * 22 21 20 24 24 C 1.38232 * 120.00501 * 220.00251 * 19 6 5 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 34 34 H 0.96992 * 120.00745 * 359.97438 * 10 8 6 35 35 H 0.96995 * 120.00595 * 180.02562 * 14 13 11 36 36 H 1.07999 * 120.00290 * 359.97438 * 20 19 6 37 37 H 1.08001 * 119.99552 * 180.23070 * 21 20 19 38 38 H 1.08000 * 119.99679 * 179.83430 * 22 21 20 39 39 H 1.07997 * 120.00135 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99439 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.4555 0.9956 -2.2524 8 6 0.2764 -0.6879 -2.8268 9 8 -0.1983 -1.6111 -2.1994 10 7 -0.3660 -0.2084 -3.9102 11 6 -1.5560 -0.7642 -4.3033 12 1 -1.9789 -1.5861 -3.7446 13 6 -2.2187 -0.2695 -5.4199 14 7 -3.3596 -0.8019 -5.7965 15 14 -1.4878 1.1525 -6.3859 16 1 -0.6026 0.6224 -7.4539 17 1 -2.5814 1.9484 -6.9989 18 1 -0.6983 2.0173 -5.4726 19 6 2.6272 -0.3210 -3.4556 20 6 3.2674 -1.5442 -3.5273 21 6 4.2209 -1.7691 -4.5027 22 6 4.5399 -0.7682 -5.4012 23 6 3.9034 0.4566 -5.3263 24 6 2.9473 0.6802 -4.3533 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2493 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -0.2074 2.1393 34 1 0.0134 0.5300 -4.4118 35 1 -3.8220 -0.4568 -6.5762 36 1 3.0208 -2.3249 -2.8229 37 1 4.7184 -2.7259 -4.5609 38 1 5.2867 -0.9431 -6.1615 39 1 4.1530 1.2386 -6.0280 40 1 2.4500 1.6371 -4.2947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151722358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = -56.484896 kcal Electronic energy + Delta-G solvation = -22450.841546 eV Core-core repulsion = 19230.773835 eV Total energy + Delta-G solvation = -3220.067711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00823 -38.40789 -37.42622 -33.98124 -33.54681 -31.82709 -31.07931 -30.66327 -27.68786 -27.08913 -26.54043 -24.29198 -22.43029 -21.47363 -20.08358 -19.16157 -18.30785 -16.92839 -16.50037 -16.00808 -15.47653 -14.93722 -14.54328 -14.33587 -14.13917 -13.51400 -13.44307 -13.21931 -13.03197 -12.84646 -12.52936 -12.40304 -12.16734 -12.08247 -11.90325 -11.55884 -11.40773 -11.31535 -11.19803 -10.89936 -10.77056 -10.60069 -10.17027 -10.00873 -9.68775 -9.51626 -8.87314 -8.71650 -8.17384 -8.05065 -6.32542 -3.82930 1.47837 1.60703 3.00415 3.06816 3.13881 3.58688 3.79272 4.03646 4.09691 4.73040 4.90073 5.02801 5.06799 5.07877 5.15754 5.23095 5.27270 5.30687 5.48652 5.62945 5.67134 5.76426 5.80950 5.83869 5.88934 5.96925 6.04128 6.11358 6.15618 6.21244 6.26570 6.47867 6.60353 6.69020 6.77701 6.84230 7.16474 7.45616 7.60483 8.12650 8.58703 8.93803 9.41060 9.80887 10.80416 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.008086 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.705988 B = 3462.065156 C = 4834.598115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 C -0.180 4.180 4 C -0.132 4.132 5 O -0.342 6.342 6 C 0.115 3.885 7 H 0.082 0.918 8 C 0.436 3.564 9 O -0.555 6.555 10 N -0.584 5.584 11 C -0.303 4.303 12 H 0.121 0.879 13 C 0.044 3.956 14 N -0.879 5.879 15 Si 0.873 3.127 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.270 1.270 19 C -0.074 4.074 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.369 0.631 35 H 0.273 0.727 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.941 5.954 5.707 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.068 3.932 3 C -0.237 4.237 4 C -0.190 4.190 5 O -0.260 6.260 6 C 0.054 3.946 7 H 0.099 0.901 8 C 0.222 3.778 9 O -0.437 6.437 10 N -0.223 5.223 11 C -0.431 4.431 12 H 0.138 0.862 13 C -0.159 4.159 14 N -0.519 5.519 15 Si 0.700 3.300 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.075 4.075 20 C -0.101 4.101 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.540 5.148 6.016 16.556 hybrid contribution 0.147 1.423 -1.056 1.778 sum 14.686 6.571 4.960 16.837 Atomic orbital electron populations 1.22524 0.94584 1.04460 1.01286 1.21525 0.94116 0.91232 0.86333 1.22479 1.01809 0.97079 1.02345 1.21699 1.01246 1.01254 0.94766 1.87984 1.72330 1.54049 1.11622 1.20713 0.91793 0.97470 0.84672 0.90076 1.20063 0.86742 0.87402 0.83624 1.90555 1.67756 1.30190 1.55172 1.42214 1.21843 1.32438 1.25847 1.19437 0.95779 1.16829 1.11081 0.86173 1.25012 0.95860 0.98032 0.97036 1.69616 1.14910 1.41396 1.25992 0.86757 0.79610 0.82614 0.81068 1.19364 1.20037 1.19512 1.19577 0.96780 0.94825 0.96313 1.21051 0.94791 0.96661 0.97550 1.21152 0.98291 0.99070 0.95554 1.21116 1.00097 0.93685 0.99093 1.21014 0.97059 0.97494 0.98446 1.20966 0.98119 0.98567 0.95779 0.92391 0.89911 0.92971 0.91544 0.91898 0.92275 0.91545 0.92247 0.91447 0.79815 0.91590 0.85263 0.86088 0.86304 0.86072 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 7.11 37.16 0.26 -2.66 16 2 C 0.11 1.63 1.13 -90.62 -0.10 1.53 16 3 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 4 C -0.13 -1.68 8.84 37.16 0.33 -1.35 16 5 O -0.34 -6.20 8.60 -55.09 -0.47 -6.67 16 6 C 0.12 2.13 2.05 -29.04 -0.06 2.07 16 7 H 0.08 1.34 5.39 -51.93 -0.28 1.06 16 8 C 0.44 10.20 5.35 -10.99 -0.06 10.14 16 9 O -0.55 -14.90 13.79 -14.32 -0.20 -15.10 16 10 N -0.58 -14.28 5.04 -10.96 -0.06 -14.33 16 11 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 12 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 13 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 14 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 15 Si 0.87 19.67 27.74 -169.99 -4.71 14.95 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 19 C -0.07 -1.28 4.92 -104.62 -0.52 -1.80 16 20 C -0.08 -1.38 9.35 -39.58 -0.37 -1.75 16 21 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 22 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.12 -1.75 9.67 -39.58 -0.38 -2.13 16 25 H 0.06 1.10 6.15 -51.93 -0.32 0.78 16 26 H 0.08 1.64 7.01 -51.93 -0.36 1.28 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.75 6.10 -51.93 -0.32 0.43 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.37 8.15 5.76 -40.82 -0.24 7.91 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 2.26 7.77 -52.49 -0.41 1.85 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -32.30 327.40 -7.46 -39.76 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.71 Total: 13.14 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.03 Total: -11.68 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.72 Total: -39.34 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.67 Total: -21.77 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.30 -7.46 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151722358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.723 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds