Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09003 * 109.46814 * 30.00042 * 6 5 2 8 8 C 1.50696 * 109.47083 * 269.99993 * 6 5 2 9 9 O 1.21296 * 119.99926 * 354.99399 * 8 6 5 10 10 N 1.34772 * 119.99749 * 175.00246 * 8 6 5 11 11 C 1.37102 * 119.99852 * 179.97438 * 10 8 6 12 12 H 1.08006 * 119.99999 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00143 * 179.97438 * 11 10 8 14 14 N 1.31418 * 120.00406 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00229 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47457 * 89.99192 * 15 13 11 17 17 H 1.48497 * 109.47195 * 210.00154 * 15 13 11 18 18 H 1.48508 * 109.46704 * 329.99466 * 15 13 11 19 19 C 1.50697 * 109.47146 * 149.99537 * 6 5 2 20 20 C 1.38240 * 119.99659 * 39.72826 * 19 6 5 21 21 C 1.38240 * 119.99557 * 179.80922 * 20 19 6 22 22 C 1.38231 * 120.00146 * 0.39581 * 21 20 19 23 23 C 1.38234 * 120.00187 * 359.85586 * 22 21 20 24 24 C 1.38232 * 120.00501 * 220.00251 * 19 6 5 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 34 34 H 0.96992 * 120.00745 * 359.97438 * 10 8 6 35 35 H 0.96995 * 120.00595 * 180.02562 * 14 13 11 36 36 H 1.07999 * 120.00290 * 359.97438 * 20 19 6 37 37 H 1.08001 * 119.99552 * 180.23070 * 21 20 19 38 38 H 1.08000 * 119.99679 * 179.83430 * 22 21 20 39 39 H 1.07997 * 120.00135 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99439 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.4555 0.9956 -2.2524 8 6 0.2764 -0.6879 -2.8268 9 8 -0.1983 -1.6111 -2.1994 10 7 -0.3660 -0.2084 -3.9102 11 6 -1.5560 -0.7642 -4.3033 12 1 -1.9789 -1.5861 -3.7446 13 6 -2.2187 -0.2695 -5.4199 14 7 -3.3596 -0.8019 -5.7965 15 14 -1.4878 1.1525 -6.3859 16 1 -0.6026 0.6224 -7.4539 17 1 -2.5814 1.9484 -6.9989 18 1 -0.6983 2.0173 -5.4726 19 6 2.6272 -0.3210 -3.4556 20 6 3.2674 -1.5442 -3.5273 21 6 4.2209 -1.7691 -4.5027 22 6 4.5399 -0.7682 -5.4012 23 6 3.9034 0.4566 -5.3263 24 6 2.9473 0.6802 -4.3533 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2493 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -0.2074 2.1393 34 1 0.0134 0.5300 -4.4118 35 1 -3.8220 -0.4568 -6.5762 36 1 3.0208 -2.3249 -2.8229 37 1 4.7184 -2.7259 -4.5609 38 1 5.2867 -0.9431 -6.1615 39 1 4.1530 1.2386 -6.0280 40 1 2.4500 1.6371 -4.2947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151722358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = -77.100545 kcal Electronic energy + Delta-G solvation = -22451.735508 eV Core-core repulsion = 19230.773835 eV Total energy + Delta-G solvation = -3220.961672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47339 -39.61946 -39.10127 -36.02239 -34.84955 -33.81169 -32.41725 -31.75576 -28.97310 -28.28691 -27.95146 -26.12516 -23.53313 -22.76079 -21.59730 -20.95996 -20.06890 -18.23100 -17.96287 -17.51613 -16.97059 -16.54744 -15.72384 -15.66317 -15.48891 -15.20168 -15.02666 -14.63010 -14.44689 -14.24801 -14.11893 -13.67976 -13.55835 -13.14946 -13.06771 -13.02358 -12.69692 -12.63297 -12.58902 -12.46818 -12.04204 -11.97468 -11.95803 -11.54039 -11.39193 -11.12618 -10.29078 -10.25287 -9.81959 -9.56888 -8.45270 -6.05566 0.34978 0.50558 1.23801 1.30486 1.38714 1.83937 2.18544 2.43861 2.75825 3.06370 3.18593 3.65853 3.87990 3.92858 3.96161 4.09042 4.11029 4.18774 4.20237 4.31015 4.61045 4.61583 4.63875 4.70916 4.80912 4.83965 4.92476 4.94839 5.02386 5.15026 5.17186 5.36492 5.41245 5.48908 5.53977 5.61005 5.63127 5.88977 6.09328 6.21145 6.55318 6.83124 7.32865 7.88211 8.72175 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.008086 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.705988 B = 3462.065156 C = 4834.598115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 C -0.173 4.173 4 C -0.129 4.129 5 O -0.359 6.359 6 C 0.130 3.870 7 H 0.106 0.894 8 C 0.438 3.562 9 O -0.601 6.601 10 N -0.583 5.583 11 C -0.327 4.327 12 H 0.057 0.943 13 C -0.010 4.010 14 N -0.930 5.930 15 Si 0.951 3.049 16 H -0.255 1.255 17 H -0.268 1.268 18 H -0.232 1.232 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.123 4.123 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.385 0.615 35 H 0.280 0.720 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 9.396 4.567 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.230 4.230 4 C -0.186 4.186 5 O -0.277 6.277 6 C 0.068 3.932 7 H 0.123 0.877 8 C 0.225 3.775 9 O -0.485 6.485 10 N -0.225 5.225 11 C -0.456 4.456 12 H 0.075 0.925 13 C -0.209 4.209 14 N -0.570 5.570 15 Si 0.770 3.230 16 H -0.179 1.179 17 H -0.193 1.193 18 H -0.155 1.155 19 C -0.102 4.102 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.141 4.141 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.220 0.780 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.870 8.592 4.900 20.424 hybrid contribution -0.894 0.204 -0.613 1.103 sum 16.975 8.796 4.287 19.594 Atomic orbital electron populations 1.22456 0.96604 1.01824 1.01446 1.21891 0.92631 0.93672 0.86276 1.22418 1.02592 0.94515 1.03427 1.21722 1.02071 1.00172 0.94596 1.87998 1.72009 1.55378 1.12334 1.20561 0.89238 0.97935 0.85427 0.87659 1.21223 0.87894 0.86200 0.82197 1.90533 1.69362 1.32242 1.56372 1.42005 1.20795 1.33039 1.26652 1.18997 0.97998 1.16677 1.11901 0.92518 1.26038 0.95893 1.01410 0.97557 1.69789 1.16795 1.43538 1.26906 0.85561 0.79461 0.78319 0.79620 1.17913 1.19278 1.15496 1.19589 0.97459 0.96018 0.97097 1.21051 0.96693 0.96409 0.98677 1.21424 0.97521 1.00622 0.94974 1.21578 0.99997 0.92995 0.98790 1.21487 0.95699 0.98437 0.98027 1.21278 0.98681 0.98765 0.95367 0.94964 0.93958 0.89896 0.89082 0.90565 0.92546 0.93573 0.90884 0.88588 0.77964 0.91028 0.87805 0.84158 0.82791 0.82481 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.83 7.11 71.98 0.51 -5.32 16 2 C 0.09 2.81 1.13 -10.79 -0.01 2.80 16 3 C -0.17 -3.81 8.37 71.98 0.60 -3.21 16 4 C -0.13 -3.13 8.84 71.98 0.64 -2.50 16 5 O -0.36 -13.26 8.60 -129.99 -1.12 -14.37 16 6 C 0.13 4.82 2.05 29.10 0.06 4.88 16 7 H 0.11 3.33 5.39 -2.39 -0.01 3.32 16 8 C 0.44 21.36 5.35 87.66 0.47 21.83 16 9 O -0.60 -34.93 13.79 15.91 0.22 -34.71 16 10 N -0.58 -29.19 5.04 -306.99 -1.55 -30.73 16 11 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 12 H 0.06 4.05 7.39 -2.91 -0.02 4.02 16 13 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 14 N -0.93 -56.66 13.96 21.66 0.30 -56.36 16 15 Si 0.95 39.43 27.74 68.60 1.90 41.33 16 16 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 19 C -0.10 -3.38 4.92 -19.87 -0.10 -3.48 16 20 C -0.11 -3.70 9.35 22.27 0.21 -3.50 16 21 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 22 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 23 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 24 C -0.12 -3.27 9.67 22.27 0.22 -3.06 16 25 H 0.03 1.26 6.15 -2.39 -0.01 1.24 16 26 H 0.04 1.80 7.01 -2.39 -0.02 1.78 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.27 6.10 -2.39 -0.01 1.26 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.39 16.46 5.76 -92.71 -0.53 15.93 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.10 3.89 7.77 -2.91 -0.02 3.87 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.14 3.06 8.04 -2.91 -0.02 3.04 16 Total: -1.00 -78.21 327.40 4.79 -73.42 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.44 Total: 39.73 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 4.59 Total: -18.31 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.25 Total: -87.10 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.90 Total: -49.08 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Total: -78.21 4.79 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151722358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.676 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds