Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53000 * 109.46978 * 240.00335 * 2 1 3 5 5 O 1.42900 * 109.47162 * 120.00399 * 2 1 3 6 6 C 1.42897 * 114.00109 * 60.00100 * 5 2 1 7 7 H 1.09004 * 109.47312 * 29.99470 * 6 5 2 8 8 C 1.50698 * 109.47379 * 149.99987 * 6 5 2 9 9 O 1.21293 * 119.99851 * 4.99478 * 8 6 5 10 10 N 1.34774 * 119.99893 * 185.00004 * 8 6 5 11 11 C 1.37100 * 119.99898 * 180.02562 * 10 8 6 12 12 H 1.08008 * 119.99906 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00099 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99988 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47358 * 89.99962 * 15 13 11 17 17 H 1.48501 * 109.47152 * 209.99982 * 15 13 11 18 18 H 1.48501 * 109.47237 * 329.99565 * 15 13 11 19 19 C 1.50703 * 109.47023 * 270.00292 * 6 5 2 20 20 C 1.38235 * 120.00292 * 144.99911 * 19 6 5 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 324.97203 * 19 6 5 25 25 H 1.08994 * 109.46849 * 299.99920 * 1 2 3 26 26 H 1.08998 * 109.47122 * 59.99518 * 1 2 3 27 27 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46968 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47562 * 300.00212 * 3 2 1 30 30 H 1.08995 * 109.46955 * 60.00785 * 3 2 1 31 31 H 1.08999 * 109.47195 * 300.00088 * 4 2 1 32 32 H 1.09000 * 109.47569 * 59.99988 * 4 2 1 33 33 H 1.09001 * 109.47526 * 179.97438 * 4 2 1 34 34 H 0.97002 * 120.00224 * 359.97438 * 10 8 6 35 35 H 0.96998 * 119.99730 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 1.4553 -2.4485 0.2639 8 6 2.6271 -2.8323 2.0057 9 8 3.5881 -2.2720 2.4893 10 7 2.4917 -4.1673 2.1313 11 6 3.4397 -4.8921 2.8062 12 1 4.2954 -4.3932 3.2369 13 6 3.2998 -6.2684 2.9361 14 7 2.2591 -6.8754 2.4116 15 14 4.5920 -7.2559 3.8551 16 1 4.2266 -7.3330 5.2923 17 1 4.6632 -8.6267 3.2882 18 1 5.9136 -6.5933 3.7151 19 6 0.2764 -2.1042 2.0091 20 6 -0.6704 -3.0482 1.6576 21 6 -1.8702 -3.1114 2.3411 22 6 -2.1231 -2.2313 3.3766 23 6 -1.1757 -1.2883 3.7290 24 6 0.0233 -1.2235 3.0441 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.7230 -4.6153 1.7447 35 1 2.1612 -7.8362 2.5026 36 1 -0.4725 -3.7362 0.8490 37 1 -2.6101 -3.8486 2.0662 38 1 -3.0623 -2.2777 3.9078 39 1 -1.3734 -0.6004 4.5378 40 1 0.7629 -0.4860 3.3187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151722422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -62.816440 kcal Electronic energy + Delta-G solvation = -22353.858268 eV Core-core repulsion = 19133.516001 eV Total energy + Delta-G solvation = -3220.342267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97685 -38.03633 -37.56855 -33.99694 -33.30604 -31.64979 -30.80873 -30.53700 -27.61306 -27.17080 -26.55394 -24.39966 -22.27808 -21.49746 -19.94578 -19.06532 -17.91635 -16.83776 -16.54150 -15.75975 -15.31014 -14.84580 -14.51380 -14.37335 -13.97170 -13.69615 -13.56620 -13.14783 -13.05424 -12.84232 -12.33263 -12.27016 -12.14399 -11.91802 -11.65750 -11.55629 -11.46934 -11.39509 -11.08579 -10.79278 -10.73848 -10.39012 -10.24973 -10.20264 -9.52957 -9.41905 -8.72159 -8.57477 -8.01730 -7.95825 -6.41699 -3.82091 1.62429 1.73858 3.18340 3.26950 3.32649 3.71892 3.84763 4.10681 4.26245 4.92929 4.94303 5.06285 5.13327 5.14366 5.26392 5.28474 5.30283 5.43574 5.59143 5.62440 5.67054 5.76947 5.83750 5.85197 5.93114 5.95393 6.00231 6.15709 6.20377 6.29222 6.35885 6.40888 6.41438 6.75592 6.80327 6.90213 7.30316 7.55424 7.57827 8.05675 8.61066 9.17395 9.52297 10.03938 10.75864 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.006282 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.387256 B = 4456.078120 C = 5467.424097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.335 6.335 6 C 0.117 3.883 7 H 0.083 0.917 8 C 0.448 3.552 9 O -0.573 6.573 10 N -0.554 5.554 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.024 3.976 14 N -0.899 5.899 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.089 4.089 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 10.086 -5.385 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.062 3.938 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.253 6.253 6 C 0.056 3.944 7 H 0.100 0.900 8 C 0.233 3.767 9 O -0.456 6.456 10 N -0.191 5.191 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.178 4.178 14 N -0.540 5.540 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.506 10.358 -4.928 14.280 hybrid contribution -0.142 -1.105 0.065 1.116 sum -8.648 9.253 -4.863 13.567 Atomic orbital electron populations 1.22549 0.95770 1.02891 1.02132 1.21551 0.93072 0.93270 0.85879 1.21706 1.02111 0.93323 1.01959 1.22464 1.02591 1.01009 0.97703 1.88126 1.73346 1.21937 1.41887 1.20748 0.90793 0.84544 0.98357 0.89973 1.19399 0.87822 0.83061 0.86445 1.90537 1.33017 1.69984 1.52047 1.41736 1.23611 1.04755 1.49038 1.19718 1.03507 0.89271 1.30302 0.87826 1.25255 0.97790 0.96863 0.97858 1.69612 1.28607 1.10786 1.45009 0.85854 0.80654 0.78515 0.79269 1.20356 1.20882 1.19348 1.20205 0.94959 0.96539 0.97465 1.20992 0.93544 0.97873 1.00470 1.21012 0.97186 0.99021 0.96450 1.21071 0.99229 0.96258 0.97762 1.21092 0.94239 0.99154 0.99843 1.20974 0.96687 0.98646 0.94429 0.91789 0.92277 0.91770 0.91704 0.91522 0.91940 0.92070 0.91739 0.91436 0.77427 0.91834 0.86049 0.86246 0.86597 0.86461 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 7.48 37.16 0.28 -1.94 16 2 C 0.10 1.45 1.13 -90.62 -0.10 1.35 16 3 C -0.13 -1.63 8.84 37.16 0.33 -1.30 16 4 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 5 O -0.34 -6.33 8.38 -55.09 -0.46 -6.79 16 6 C 0.12 2.28 2.06 -29.03 -0.06 2.22 16 7 H 0.08 1.45 5.44 -51.93 -0.28 1.17 16 8 C 0.45 11.25 7.12 -10.99 -0.08 11.17 16 9 O -0.57 -16.59 16.08 -14.31 -0.23 -16.82 16 10 N -0.55 -14.49 5.24 -10.96 -0.06 -14.55 16 11 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 12 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 14 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 15 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.09 -1.61 2.80 -104.62 -0.29 -1.90 16 20 C -0.11 -1.78 9.00 -39.59 -0.36 -2.14 16 21 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 22 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 23 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.09 -1.53 8.77 -39.58 -0.35 -1.88 16 25 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.85 5.77 -51.93 -0.30 0.55 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.83 6.10 -51.93 -0.32 0.51 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.39 9.78 7.73 -40.82 -0.32 9.46 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.13 2.25 7.63 -52.49 -0.40 1.85 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -32.17 331.46 -7.56 -39.73 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.76 Total: 12.03 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.75 Total: -11.02 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.67 Total: -38.33 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.69 Total: -23.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.17 -7.56 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151722422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.089 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds