Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53000 * 109.46978 * 240.00335 * 2 1 3 5 5 O 1.42900 * 109.47162 * 120.00399 * 2 1 3 6 6 C 1.42897 * 114.00109 * 60.00100 * 5 2 1 7 7 H 1.09004 * 109.47312 * 29.99470 * 6 5 2 8 8 C 1.50698 * 109.47379 * 149.99987 * 6 5 2 9 9 O 1.21293 * 119.99851 * 4.99478 * 8 6 5 10 10 N 1.34774 * 119.99893 * 185.00004 * 8 6 5 11 11 C 1.37100 * 119.99898 * 180.02562 * 10 8 6 12 12 H 1.08008 * 119.99906 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00099 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99988 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47358 * 89.99962 * 15 13 11 17 17 H 1.48501 * 109.47152 * 209.99982 * 15 13 11 18 18 H 1.48501 * 109.47237 * 329.99565 * 15 13 11 19 19 C 1.50703 * 109.47023 * 270.00292 * 6 5 2 20 20 C 1.38235 * 120.00292 * 144.99911 * 19 6 5 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 324.97203 * 19 6 5 25 25 H 1.08994 * 109.46849 * 299.99920 * 1 2 3 26 26 H 1.08998 * 109.47122 * 59.99518 * 1 2 3 27 27 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46968 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47562 * 300.00212 * 3 2 1 30 30 H 1.08995 * 109.46955 * 60.00785 * 3 2 1 31 31 H 1.08999 * 109.47195 * 300.00088 * 4 2 1 32 32 H 1.09000 * 109.47569 * 59.99988 * 4 2 1 33 33 H 1.09001 * 109.47526 * 179.97438 * 4 2 1 34 34 H 0.97002 * 120.00224 * 359.97438 * 10 8 6 35 35 H 0.96998 * 119.99730 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 1.4553 -2.4485 0.2639 8 6 2.6271 -2.8323 2.0057 9 8 3.5881 -2.2720 2.4893 10 7 2.4917 -4.1673 2.1313 11 6 3.4397 -4.8921 2.8062 12 1 4.2954 -4.3932 3.2369 13 6 3.2998 -6.2684 2.9361 14 7 2.2591 -6.8754 2.4116 15 14 4.5920 -7.2559 3.8551 16 1 4.2266 -7.3330 5.2923 17 1 4.6632 -8.6267 3.2882 18 1 5.9136 -6.5933 3.7151 19 6 0.2764 -2.1042 2.0091 20 6 -0.6704 -3.0482 1.6576 21 6 -1.8702 -3.1114 2.3411 22 6 -2.1231 -2.2313 3.3766 23 6 -1.1757 -1.2883 3.7290 24 6 0.0233 -1.2235 3.0441 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.7230 -4.6153 1.7447 35 1 2.1612 -7.8362 2.5026 36 1 -0.4725 -3.7362 0.8490 37 1 -2.6101 -3.8486 2.0662 38 1 -3.0623 -2.2777 3.9078 39 1 -1.3734 -0.6004 4.5378 40 1 0.7629 -0.4860 3.3187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151722422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -82.047178 kcal Electronic energy + Delta-G solvation = -22354.692175 eV Core-core repulsion = 19133.516001 eV Total energy + Delta-G solvation = -3221.176174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40213 -39.49664 -39.16243 -36.04806 -34.63483 -33.45830 -32.36662 -31.72803 -28.86063 -28.17547 -28.00277 -26.27617 -23.47926 -22.83856 -21.46587 -20.60242 -19.95049 -18.26356 -17.88712 -17.30592 -16.81643 -16.53532 -15.91649 -15.70848 -15.48843 -15.23121 -15.15283 -14.53727 -14.25457 -14.17314 -13.75198 -13.59588 -13.56068 -13.12028 -13.02348 -12.93180 -12.71638 -12.58322 -12.54895 -12.45808 -12.13688 -11.95809 -11.93026 -11.56700 -11.44515 -10.82221 -10.34248 -10.07383 -9.77641 -9.51882 -8.50396 -5.99999 0.40495 0.53569 1.35558 1.39900 1.52846 1.93526 2.18616 2.48425 2.85915 3.14806 3.48790 3.68461 3.90103 3.93952 4.00480 4.12854 4.16368 4.24147 4.29621 4.35147 4.61803 4.65523 4.68016 4.73564 4.81334 4.85911 4.93435 4.94473 5.06618 5.14703 5.18348 5.36166 5.36979 5.40160 5.58239 5.63071 5.67382 5.90177 6.13139 6.30424 6.55967 7.06486 7.46091 8.01654 8.66735 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.006282 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.387256 B = 4456.078120 C = 5467.424097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.135 3.865 7 H 0.096 0.904 8 C 0.440 3.560 9 O -0.622 6.622 10 N -0.557 5.557 11 C -0.339 4.339 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.913 5.913 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.266 1.266 18 H -0.273 1.273 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.109 4.109 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.397 0.603 35 H 0.280 0.720 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 9.740 -5.758 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.073 3.927 7 H 0.114 0.886 8 C 0.227 3.773 9 O -0.509 6.509 10 N -0.194 5.194 11 C -0.469 4.469 12 H 0.096 0.904 13 C -0.207 4.207 14 N -0.553 5.553 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.190 1.190 18 H -0.198 1.198 19 C -0.107 4.107 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.128 4.128 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.743 10.006 -5.325 15.617 hybrid contribution 0.493 -0.953 0.168 1.086 sum -10.250 9.053 -5.156 14.615 Atomic orbital electron populations 1.22456 0.94125 1.02694 1.03158 1.21955 0.94496 0.93868 0.84653 1.21749 1.01332 0.92259 1.03488 1.22467 1.01553 1.00945 0.98651 1.88089 1.74331 1.21537 1.44403 1.20392 0.89626 0.84445 0.98205 0.88626 1.20457 0.88285 0.82947 0.85657 1.90483 1.35396 1.70897 1.54116 1.41753 1.23375 1.05271 1.48986 1.19683 1.04113 0.90407 1.32653 0.90438 1.26048 0.99710 0.96997 0.97974 1.69663 1.29384 1.11503 1.44771 0.84927 0.77746 0.77394 0.78259 1.19563 1.19023 1.19816 1.20051 0.94471 0.97951 0.98195 1.21164 0.94138 0.97573 1.01178 1.21395 0.96850 0.99438 0.95994 1.21501 1.00103 0.94879 0.97142 1.21392 0.93294 0.99764 0.99905 1.20972 0.97662 0.98820 0.95304 0.92458 0.89423 0.92580 0.92996 0.88133 0.92211 0.92812 0.88387 0.93088 0.76896 0.91017 0.85517 0.83473 0.83049 0.84042 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.48 71.98 0.54 -3.43 16 2 C 0.09 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.13 -3.09 8.84 71.98 0.64 -2.45 16 4 C -0.18 -4.60 8.37 71.98 0.60 -4.00 16 5 O -0.36 -14.34 8.38 -129.99 -1.09 -15.43 16 6 C 0.13 5.44 2.06 29.10 0.06 5.50 16 7 H 0.10 3.49 5.44 -2.38 -0.01 3.47 16 8 C 0.44 23.21 7.12 87.66 0.62 23.84 16 9 O -0.62 -38.33 16.08 15.92 0.26 -38.07 16 10 N -0.56 -30.27 5.24 -306.98 -1.61 -31.88 16 11 C -0.34 -20.00 9.68 84.04 0.81 -19.19 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 14 N -0.91 -49.40 13.05 21.66 0.28 -49.12 16 15 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 C -0.11 -3.78 2.80 -19.87 -0.06 -3.84 16 20 C -0.12 -3.84 9.00 22.27 0.20 -3.64 16 21 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 23 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 24 C -0.11 -3.79 8.77 22.27 0.20 -3.59 16 25 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.42 5.77 -2.39 -0.01 1.41 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.44 6.10 -2.39 -0.01 1.42 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.40 20.35 7.73 -92.71 -0.72 19.63 16 35 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.11 4.00 7.63 -2.91 -0.02 3.98 16 Total: -1.00 -72.23 331.46 4.93 -67.30 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.32 Total: 38.73 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.74 Total: -17.04 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.33 Total: -81.00 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.83 Total: -53.50 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.23 4.93 -67.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151722422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.743 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds