Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 116.99770 * 2 1 4 4 C 1.38739 * 120.05160 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94288 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05264 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94018 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47380 * 19.99999 * 7 6 5 9 9 N 1.46504 * 109.47396 * 140.00041 * 7 6 5 10 10 C 1.34773 * 120.00111 * 204.99920 * 9 7 6 11 11 O 1.21690 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.46375 * 119.99987 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99644 * 0.02562 * 12 10 9 14 14 C 1.40044 * 120.00288 * 180.02562 * 12 10 9 15 15 N 1.30675 * 119.99998 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00330 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47250 * 59.99824 * 16 14 12 18 18 H 1.48495 * 109.47273 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47170 * 300.00099 * 16 14 12 20 20 C 1.53006 * 109.47180 * 259.99953 * 7 6 5 21 21 C 1.52997 * 109.47127 * 59.99852 * 20 7 6 22 22 C 1.52992 * 109.47223 * 180.02562 * 20 7 6 23 23 C 1.38262 * 120.11387 * 0.27115 * 6 5 4 24 24 C 1.38145 * 120.05619 * 359.45546 * 23 6 5 25 25 H 1.09011 * 109.47030 * 299.99921 * 1 2 3 26 26 H 1.09000 * 109.47353 * 59.99772 * 1 2 3 27 27 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.03126 * 359.95642 * 4 3 2 29 29 H 1.07993 * 119.97430 * 180.02562 * 5 4 3 30 30 H 0.97003 * 119.99624 * 24.99603 * 9 7 6 31 31 H 0.96994 * 120.00083 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.46505 * 299.99723 * 20 7 6 33 33 H 1.09002 * 109.47153 * 180.02562 * 21 20 7 34 34 H 1.09001 * 109.46832 * 60.00321 * 21 20 7 35 35 H 1.09004 * 109.47261 * 300.00303 * 21 20 7 36 36 H 1.09001 * 109.47066 * 299.99881 * 22 20 7 37 37 H 1.08996 * 109.47747 * 59.99547 * 22 20 7 38 38 H 1.09002 * 109.47103 * 179.97438 * 22 20 7 39 39 H 1.08005 * 119.96975 * 179.70797 * 23 6 5 40 40 H 1.07997 * 120.03026 * 180.27683 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0111 4.9037 -0.3543 9 7 3.2640 5.9338 -0.8890 10 6 3.9077 6.9767 -1.4496 11 8 5.0886 7.1585 -1.2184 12 6 3.1864 7.8909 -2.3365 13 1 2.1383 7.7298 -2.5413 14 6 3.8554 8.9744 -2.9195 15 7 5.1236 9.1690 -2.6721 16 14 2.9347 10.1414 -4.0507 17 1 1.8135 10.7701 -3.3072 18 1 3.8612 11.1967 -4.5334 19 1 2.3973 9.3855 -5.2105 20 6 3.9961 5.5870 1.4188 21 6 4.7501 4.6312 2.3454 22 6 4.6901 6.9505 1.4175 23 6 1.9211 3.6047 0.0062 24 6 1.2915 2.3751 0.0010 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3799 -0.0002 29 1 5.1345 2.5750 -0.0019 30 1 2.3227 5.7891 -1.0730 31 1 5.5869 9.9196 -3.0755 32 1 2.9711 5.7019 1.7713 33 1 4.7568 5.0360 3.3574 34 1 5.7751 4.5165 1.9928 35 1 4.2552 3.6600 2.3462 36 1 5.7151 6.8361 1.0647 37 1 4.1526 7.6313 0.7574 38 1 4.6968 7.3557 2.4293 39 1 1.3342 4.5114 0.0114 40 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153522466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -61.523962 kcal Electronic energy + Delta-G solvation = -21694.937571 eV Core-core repulsion = 18474.651350 eV Total energy + Delta-G solvation = -3220.286221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19672 -38.60606 -36.91007 -34.92473 -32.51105 -31.97204 -30.88572 -30.03855 -27.57951 -26.63593 -26.08586 -24.51978 -22.62650 -21.23917 -20.04493 -18.97543 -18.20488 -17.28445 -16.07123 -15.78719 -15.45343 -15.16524 -14.81254 -14.35364 -14.23446 -13.80524 -13.60703 -13.20037 -12.90866 -12.62793 -12.38390 -12.03122 -11.97009 -11.78175 -11.45812 -11.31323 -11.13979 -11.03863 -10.85102 -10.68919 -10.48351 -10.42549 -10.22606 -10.03962 -9.98124 -8.86735 -8.81833 -7.99153 -7.53044 -7.40054 -6.15626 -4.61190 1.46627 1.55606 3.16575 3.21824 3.23270 3.24246 3.88057 4.12759 4.61483 4.81308 4.84414 4.96206 5.00513 5.05831 5.12544 5.30024 5.48511 5.55385 5.56266 5.59737 5.74046 5.87068 5.92692 6.05119 6.21123 6.23067 6.34034 6.40435 6.45681 6.54299 6.59992 6.73665 6.84666 6.88926 7.07203 7.40053 7.41504 7.45593 7.95699 8.14818 8.35745 9.05228 9.57058 10.62897 10.82483 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.004605 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.846440 B = 6078.976658 C = 6970.207465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.103 4.103 7 C 0.200 3.800 8 H 0.083 0.917 9 N -0.760 5.760 10 C 0.558 3.442 11 O -0.572 6.572 12 C -0.547 4.547 13 H 0.064 0.936 14 C 0.090 3.910 15 N -0.767 5.767 16 Si 0.904 3.096 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.073 4.073 24 C -0.205 4.205 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.377 0.623 31 H 0.268 0.732 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -13.534 6.593 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.104 4.104 7 C 0.094 3.906 8 H 0.101 0.899 9 N -0.415 5.415 10 C 0.362 3.638 11 O -0.455 6.455 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.396 5.396 16 Si 0.729 3.271 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.116 4.116 21 C -0.202 4.202 22 C -0.189 4.189 23 C -0.092 4.092 24 C -0.224 4.224 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.210 0.790 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.599 -13.456 6.715 16.422 hybrid contribution -1.309 0.627 -0.672 1.599 sum -7.908 -12.829 6.043 16.237 Atomic orbital electron populations 1.23004 0.78768 1.03533 1.01353 1.86034 1.21096 1.27291 1.89155 1.18986 0.92361 0.83922 0.97938 1.20354 0.91247 0.98432 1.06867 1.20873 0.99970 0.90799 0.97479 1.20162 0.93671 0.95694 1.00860 1.19467 0.96530 0.84610 0.90033 0.89896 1.46287 1.12621 1.30644 1.51950 1.18088 0.86765 0.79187 0.79749 1.90606 1.16253 1.73994 1.64603 1.20848 0.97022 1.10996 1.29572 0.91754 1.25651 0.94483 0.97308 0.95534 1.69999 1.08840 1.25490 1.35236 0.86492 0.79889 0.79950 0.80747 1.19379 1.20616 1.19384 1.21496 0.99099 0.96203 0.94830 1.21846 1.00418 0.99053 0.98858 1.21820 1.01958 0.95929 0.99222 1.20791 0.94260 0.96921 0.97211 1.21161 0.99702 0.92335 1.09152 0.92803 0.92703 0.88578 0.85519 0.85307 0.79035 0.92153 0.92313 0.93349 0.92804 0.93033 0.92053 0.91000 0.95293 0.85677 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.93 10.50 -19.41 -0.20 -4.14 16 3 C 0.11 1.51 6.69 -39.21 -0.26 1.25 16 4 C -0.15 -2.02 9.99 -39.43 -0.39 -2.41 16 5 C -0.07 -1.04 8.70 -39.60 -0.34 -1.39 16 6 C -0.10 -1.63 4.05 -104.60 -0.42 -2.05 16 7 C 0.20 3.78 2.04 -69.08 -0.14 3.64 16 8 H 0.08 1.78 7.43 -51.93 -0.39 1.39 16 9 N -0.76 -16.52 4.91 -56.34 -0.28 -16.80 16 10 C 0.56 15.19 6.10 -12.99 -0.08 15.11 16 11 O -0.57 -17.34 12.14 5.20 0.06 -17.27 16 12 C -0.55 -15.17 9.54 -35.63 -0.34 -15.51 16 13 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 14 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 16 Si 0.90 20.04 29.56 -169.99 -5.02 15.02 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.10 -1.69 2.67 -90.62 -0.24 -1.93 16 21 C -0.14 -2.12 8.79 37.16 0.33 -1.79 16 22 C -0.13 -2.72 7.72 37.15 0.29 -2.43 16 23 C -0.07 -1.06 9.04 -39.61 -0.36 -1.42 16 24 C -0.20 -2.65 9.04 -39.43 -0.36 -3.01 16 25 H 0.05 0.39 7.66 -51.92 -0.40 0.00 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 30 H 0.38 7.40 6.86 -40.82 -0.28 7.12 16 31 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.71 6.64 -51.93 -0.34 0.36 16 36 H 0.06 1.38 7.52 -51.93 -0.39 0.99 16 37 H 0.07 1.75 5.77 -51.93 -0.30 1.45 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.13 1.72 6.93 -52.48 -0.36 1.35 16 40 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -32.57 325.65 -7.00 -39.57 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.70 Total: 8.96 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.43 Total: -8.35 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.38 Total: -38.70 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.14 Total: -21.41 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.57 -7.00 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153522466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.951 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds