Wall clock time and date at job start Mon Mar 30 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 116.99770 * 2 1 4 4 C 1.38739 * 120.05160 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94288 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05264 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94018 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47380 * 19.99999 * 7 6 5 9 9 N 1.46504 * 109.47396 * 140.00041 * 7 6 5 10 10 C 1.34773 * 120.00111 * 204.99920 * 9 7 6 11 11 O 1.21690 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.46375 * 119.99987 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99644 * 0.02562 * 12 10 9 14 14 C 1.40044 * 120.00288 * 180.02562 * 12 10 9 15 15 N 1.30675 * 119.99998 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00330 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47250 * 59.99824 * 16 14 12 18 18 H 1.48495 * 109.47273 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47170 * 300.00099 * 16 14 12 20 20 C 1.53006 * 109.47180 * 259.99953 * 7 6 5 21 21 C 1.52997 * 109.47127 * 59.99852 * 20 7 6 22 22 C 1.52992 * 109.47223 * 180.02562 * 20 7 6 23 23 C 1.38262 * 120.11387 * 0.27115 * 6 5 4 24 24 C 1.38145 * 120.05619 * 359.45546 * 23 6 5 25 25 H 1.09011 * 109.47030 * 299.99921 * 1 2 3 26 26 H 1.09000 * 109.47353 * 59.99772 * 1 2 3 27 27 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.03126 * 359.95642 * 4 3 2 29 29 H 1.07993 * 119.97430 * 180.02562 * 5 4 3 30 30 H 0.97003 * 119.99624 * 24.99603 * 9 7 6 31 31 H 0.96994 * 120.00083 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.46505 * 299.99723 * 20 7 6 33 33 H 1.09002 * 109.47153 * 180.02562 * 21 20 7 34 34 H 1.09001 * 109.46832 * 60.00321 * 21 20 7 35 35 H 1.09004 * 109.47261 * 300.00303 * 21 20 7 36 36 H 1.09001 * 109.47066 * 299.99881 * 22 20 7 37 37 H 1.08996 * 109.47747 * 59.99547 * 22 20 7 38 38 H 1.09002 * 109.47103 * 179.97438 * 22 20 7 39 39 H 1.08005 * 119.96975 * 179.70797 * 23 6 5 40 40 H 1.07997 * 120.03026 * 180.27683 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0111 4.9037 -0.3543 9 7 3.2640 5.9338 -0.8890 10 6 3.9077 6.9767 -1.4496 11 8 5.0886 7.1585 -1.2184 12 6 3.1864 7.8909 -2.3365 13 1 2.1383 7.7298 -2.5413 14 6 3.8554 8.9744 -2.9195 15 7 5.1236 9.1690 -2.6721 16 14 2.9347 10.1414 -4.0507 17 1 1.8135 10.7701 -3.3072 18 1 3.8612 11.1967 -4.5334 19 1 2.3973 9.3855 -5.2105 20 6 3.9961 5.5870 1.4188 21 6 4.7501 4.6312 2.3454 22 6 4.6901 6.9505 1.4175 23 6 1.9211 3.6047 0.0062 24 6 1.2915 2.3751 0.0010 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3799 -0.0002 29 1 5.1345 2.5750 -0.0019 30 1 2.3227 5.7891 -1.0730 31 1 5.5869 9.9196 -3.0755 32 1 2.9711 5.7019 1.7713 33 1 4.7568 5.0360 3.3574 34 1 5.7751 4.5165 1.9928 35 1 4.2552 3.6600 2.3462 36 1 5.7151 6.8361 1.0647 37 1 4.1526 7.6313 0.7574 38 1 4.6968 7.3557 2.4293 39 1 1.3342 4.5114 0.0114 40 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153522466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:10 Heat of formation + Delta-G solvation = -82.880774 kcal Electronic energy + Delta-G solvation = -21695.863672 eV Core-core repulsion = 18474.651350 eV Total energy + Delta-G solvation = -3221.212322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29652 -40.03342 -38.39963 -36.49393 -34.55641 -33.72072 -31.98337 -31.31813 -28.76759 -28.16160 -27.60508 -26.00948 -23.74305 -22.38954 -21.89505 -20.56120 -19.41363 -18.89672 -17.52730 -17.03114 -16.67568 -16.59014 -16.28667 -15.83758 -15.72777 -15.30137 -14.59824 -14.51796 -14.32124 -14.12403 -13.68648 -13.49545 -13.34240 -13.09054 -12.93998 -12.77682 -12.71106 -12.55009 -12.49713 -12.18349 -12.05120 -11.75809 -11.72464 -11.56263 -11.51051 -10.86607 -9.93169 -9.71803 -9.31693 -9.01119 -8.22435 -6.78509 0.40331 0.44400 1.40432 1.43482 1.54239 2.26529 2.41043 2.54999 2.77836 3.21646 3.69496 3.77747 3.86654 3.98570 4.15910 4.20132 4.34523 4.43614 4.45712 4.46251 4.56852 4.65132 4.76691 4.78032 4.83050 4.92053 5.07475 5.10250 5.13473 5.24625 5.29997 5.35781 5.40624 5.46999 5.64266 5.70166 5.80371 5.96528 6.29177 6.39774 6.47991 6.93109 7.63562 8.58151 8.76254 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.004605 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.846440 B = 6078.976658 C = 6970.207465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.154 4.154 5 C -0.076 4.076 6 C -0.121 4.121 7 C 0.205 3.795 8 H 0.048 0.952 9 N -0.750 5.750 10 C 0.547 3.453 11 O -0.613 6.613 12 C -0.578 4.578 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.819 5.819 16 Si 0.990 3.010 17 H -0.256 1.256 18 H -0.276 1.276 19 H -0.257 1.257 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.201 4.201 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.144 0.856 29 H 0.133 0.867 30 H 0.389 0.611 31 H 0.272 0.728 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.052 0.948 39 H 0.129 0.871 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -14.928 6.848 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.069 3.931 4 C -0.173 4.173 5 C -0.095 4.095 6 C -0.122 4.122 7 C 0.099 3.901 8 H 0.066 0.934 9 N -0.403 5.403 10 C 0.351 3.649 11 O -0.499 6.499 12 C -0.615 4.615 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.448 5.448 16 Si 0.810 3.190 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.110 4.110 21 C -0.192 4.192 22 C -0.179 4.179 23 C -0.097 4.097 24 C -0.219 4.219 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.161 0.839 29 H 0.151 0.849 30 H 0.223 0.777 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.147 0.853 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.188 -14.900 6.992 18.850 hybrid contribution -0.570 0.917 -0.708 1.291 sum -9.759 -13.983 6.284 18.173 Atomic orbital electron populations 1.23337 0.76579 1.05530 1.02212 1.86035 1.23364 1.26560 1.88753 1.19148 0.92529 0.84634 0.96795 1.20542 0.91843 0.98496 1.06396 1.20927 1.00266 0.90830 0.97459 1.19865 0.94407 0.94113 1.03780 1.19435 0.94769 0.86017 0.89888 0.93379 1.45985 1.13073 1.29742 1.51548 1.18331 0.86447 0.80252 0.79903 1.90569 1.18010 1.75311 1.65993 1.21387 0.97995 1.11867 1.30233 0.90168 1.26815 0.95280 0.99055 0.96978 1.70169 1.11118 1.26616 1.36928 0.85189 0.78421 0.77136 0.78266 1.18023 1.20045 1.18157 1.21436 0.99729 0.95016 0.94849 1.21750 0.99736 0.98937 0.98748 1.21659 0.99817 0.97178 0.99234 1.20859 0.93577 0.97935 0.97286 1.21379 1.01082 0.91392 1.08059 0.91664 0.92022 0.86223 0.83859 0.84947 0.77709 0.91826 0.91177 0.91623 0.93302 0.91534 0.94972 0.95264 0.92912 0.85285 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.13 10.50 -92.36 -0.97 -8.10 16 3 C 0.11 2.76 6.69 22.51 0.15 2.91 16 4 C -0.15 -3.85 9.99 22.37 0.22 -3.62 16 5 C -0.08 -2.13 8.70 22.26 0.19 -1.94 16 6 C -0.12 -3.76 4.05 -19.85 -0.08 -3.84 16 7 C 0.20 7.94 2.04 44.25 0.09 8.03 16 8 H 0.05 2.20 7.43 -2.39 -0.02 2.18 16 9 N -0.75 -33.56 4.91 -450.38 -2.21 -35.77 16 10 C 0.55 31.09 6.10 86.36 0.53 31.62 16 11 O -0.61 -39.40 12.14 -4.32 -0.05 -39.45 16 12 C -0.58 -32.75 9.54 24.83 0.24 -32.51 16 13 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 14 C 0.03 1.89 5.50 85.30 0.47 2.36 16 15 N -0.82 -49.98 11.83 21.83 0.26 -49.72 16 16 Si 0.99 41.34 29.56 68.60 2.03 43.37 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 C -0.09 -3.20 2.67 -10.79 -0.03 -3.23 16 21 C -0.13 -3.80 8.79 71.98 0.63 -3.17 16 22 C -0.12 -5.21 7.72 71.98 0.56 -4.65 16 23 C -0.08 -2.13 9.04 22.25 0.20 -1.93 16 24 C -0.20 -4.64 9.04 22.37 0.20 -4.43 16 25 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 26 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 27 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.13 3.49 8.03 -2.91 -0.02 3.47 16 30 H 0.39 15.38 6.86 -92.71 -0.64 14.75 16 31 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.71 6.64 -2.38 -0.02 1.69 16 36 H 0.03 1.52 7.52 -2.39 -0.02 1.50 16 37 H 0.03 1.47 5.77 -2.39 -0.01 1.46 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.13 3.34 6.93 -2.91 -0.02 3.32 16 40 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -73.95 325.65 3.95 -70.00 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.41 Total: 32.73 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.49 Total: -13.07 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.95 Total: -85.48 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.02 Total: -47.55 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.95 3.95 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153522466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.878 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds