Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50707 * 119.94209 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47372 * 340.00019 * 7 6 5 9 9 N 1.46508 * 109.46881 * 219.99967 * 7 6 5 10 10 C 1.34778 * 119.99624 * 155.00560 * 9 7 6 11 11 O 1.21694 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.46371 * 120.00013 * 180.02562 * 10 9 7 13 13 H 1.08003 * 119.99851 * 359.97438 * 12 10 9 14 14 C 1.40049 * 120.00082 * 179.97438 * 12 10 9 15 15 N 1.30670 * 120.00074 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99979 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46972 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47029 * 119.99464 * 16 14 12 19 19 H 1.48493 * 109.47116 * 239.99766 * 16 14 12 20 20 C 1.52997 * 109.46837 * 100.00477 * 7 6 5 21 21 C 1.53005 * 109.47006 * 299.99644 * 20 7 6 22 22 C 1.53000 * 109.47432 * 59.99817 * 20 7 6 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 0.96996 * 119.99736 * 335.00132 * 9 7 6 31 31 H 0.96996 * 119.99890 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.46859 * 180.02562 * 20 7 6 33 33 H 1.08996 * 109.47113 * 180.02562 * 21 20 7 34 34 H 1.08994 * 109.46972 * 300.00316 * 21 20 7 35 35 H 1.09002 * 109.46937 * 60.00506 * 21 20 7 36 36 H 1.09000 * 109.47328 * 60.00074 * 22 20 7 37 37 H 1.09006 * 109.47116 * 180.02562 * 22 20 7 38 38 H 1.09002 * 109.47331 * 299.99996 * 22 20 7 39 39 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 40 40 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0119 8 1 5.0130 4.9048 0.3352 9 7 3.2690 5.9363 0.8769 10 6 3.9159 6.9809 1.4309 11 8 5.0956 7.1615 1.1932 12 6 3.1997 7.8975 2.3194 13 1 2.1527 7.7369 2.5307 14 6 3.8719 8.9826 2.8955 15 7 5.1387 9.1766 2.6402 16 14 2.9577 10.1528 4.0288 17 1 1.5439 9.7162 4.1549 18 1 3.5985 10.1463 5.3683 19 1 3.0039 11.5256 3.4645 20 6 3.9879 5.5831 -1.4339 21 6 4.7368 4.6247 -2.3622 22 6 2.5464 5.7428 -1.9211 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 2.3288 5.7921 1.0666 31 1 5.6044 9.9279 3.0395 32 1 4.4832 6.5541 -1.4386 33 1 4.7385 5.0271 -3.3751 34 1 5.7637 4.5109 -2.0150 35 1 4.2419 3.6535 -2.3575 36 1 2.0129 6.4256 -1.2598 37 1 2.5477 6.1446 -2.9344 38 1 2.0515 4.7717 -1.9164 39 1 1.3342 4.5115 -0.0001 40 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153522559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -61.776073 kcal Electronic energy + Delta-G solvation = -21730.335621 eV Core-core repulsion = 18510.038468 eV Total energy + Delta-G solvation = -3220.297153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26167 -38.65383 -36.82016 -35.10986 -32.54566 -31.79540 -30.98847 -29.92892 -27.54388 -26.79019 -26.48021 -24.60530 -22.45460 -21.52345 -20.13474 -18.72376 -18.11484 -17.36784 -16.07032 -15.79531 -15.47600 -15.20366 -14.92025 -14.42854 -14.05927 -13.81903 -13.53309 -13.30735 -13.19762 -12.52275 -12.44667 -12.10328 -12.04153 -11.98375 -11.72852 -11.27352 -11.16529 -11.08317 -11.02341 -10.69560 -10.50844 -10.45026 -10.33879 -10.16323 -9.97670 -8.85093 -8.83298 -7.98156 -7.56014 -7.46055 -6.16821 -4.62071 1.47093 1.56257 3.13557 3.21907 3.24651 3.26026 3.88399 4.12335 4.60700 4.81682 4.84563 4.96714 5.00699 5.05923 5.11832 5.30176 5.42355 5.54163 5.54626 5.56327 5.67524 5.79481 5.87844 5.99304 6.06058 6.18043 6.23018 6.32264 6.37280 6.45551 6.47254 6.57482 6.71487 6.83790 6.92995 6.97418 7.41996 7.45005 7.94840 8.13446 8.35533 9.04607 9.55976 10.62065 10.81239 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.004541 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.266116 B = 6164.104917 C = 6813.954731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.151 4.151 5 C -0.073 4.073 6 C -0.101 4.101 7 C 0.201 3.799 8 H 0.082 0.918 9 N -0.758 5.758 10 C 0.557 3.443 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.066 0.934 14 C 0.089 3.911 15 N -0.767 5.767 16 Si 0.905 3.095 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.071 4.071 24 C -0.207 4.207 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.378 0.622 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 -13.929 -6.791 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.170 4.170 5 C -0.091 4.091 6 C -0.102 4.102 7 C 0.095 3.905 8 H 0.100 0.900 9 N -0.413 5.413 10 C 0.361 3.639 11 O -0.462 6.462 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.396 5.396 16 Si 0.730 3.270 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.122 4.122 21 C -0.201 4.201 22 C -0.203 4.203 23 C -0.090 4.090 24 C -0.226 4.226 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.210 0.790 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.386 -13.859 -6.922 17.162 hybrid contribution -1.225 0.670 0.663 1.545 sum -8.611 -13.189 -6.259 16.949 Atomic orbital electron populations 1.23001 0.78783 1.03519 1.01346 1.86037 1.21082 1.27309 1.89159 1.18984 0.92350 0.83908 0.97903 1.20343 0.91244 0.98414 1.06984 1.20869 0.99965 0.90807 0.97508 1.20113 0.93660 0.95599 1.00854 1.19401 0.96521 0.84742 0.89873 0.89953 1.46257 1.12785 1.30374 1.51857 1.18196 0.86601 0.79265 0.79874 1.90597 1.16481 1.74234 1.64858 1.20911 0.97219 1.10701 1.29402 0.91546 1.25683 0.94480 0.97376 0.95561 1.70026 1.08881 1.25432 1.35290 0.86358 0.80394 0.80170 0.80076 1.18838 1.20205 1.20202 1.21458 0.96168 0.99964 0.94590 1.21826 1.00175 0.99319 0.98797 1.21927 0.96972 1.01275 1.00176 1.20848 0.94297 0.96912 0.96910 1.21162 0.99698 0.92343 1.09371 0.92716 0.92805 0.88594 0.85550 0.85325 0.78968 0.92230 0.90174 0.93319 0.92847 0.92859 0.92222 0.93715 0.92801 0.85516 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.92 10.50 -19.44 -0.20 -4.13 16 3 C 0.11 1.51 6.69 -39.21 -0.26 1.25 16 4 C -0.15 -2.02 9.99 -39.43 -0.39 -2.42 16 5 C -0.07 -1.04 8.70 -39.61 -0.34 -1.39 16 6 C -0.10 -1.59 3.80 -104.60 -0.40 -1.99 16 7 C 0.20 3.81 2.08 -69.08 -0.14 3.67 16 8 H 0.08 1.78 7.43 -51.93 -0.39 1.39 16 9 N -0.76 -16.59 4.26 -56.34 -0.24 -16.83 16 10 C 0.56 15.54 7.71 -12.99 -0.10 15.44 16 11 O -0.58 -18.36 14.68 5.19 0.08 -18.28 16 12 C -0.55 -15.29 9.54 -35.63 -0.34 -15.63 16 13 H 0.07 1.72 7.85 -52.48 -0.41 1.30 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 15 N -0.77 -22.93 11.83 55.55 0.66 -22.27 16 16 Si 0.91 20.13 29.56 -169.99 -5.02 15.11 16 17 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.10 -1.78 2.90 -90.62 -0.26 -2.04 16 21 C -0.14 -2.09 8.79 37.16 0.33 -1.76 16 22 C -0.15 -2.25 7.95 37.16 0.30 -1.96 16 23 C -0.07 -1.02 6.83 -39.61 -0.27 -1.29 16 24 C -0.21 -2.66 9.04 -39.44 -0.36 -3.01 16 25 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 26 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 30 H 0.38 7.42 6.85 -40.82 -0.28 7.15 16 31 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.73 6.64 -51.93 -0.34 0.38 16 36 H 0.06 0.98 7.60 -51.93 -0.39 0.59 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.75 5.59 -51.93 -0.29 0.46 16 39 H 0.13 1.74 6.08 -52.48 -0.32 1.42 16 40 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -33.70 326.22 -6.82 -40.52 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.65 Total: 8.51 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.35 Total: -7.55 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.42 Total: -39.10 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.13 Total: -22.41 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.70 -6.82 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153522559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.257 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds