Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50707 * 119.94209 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47372 * 340.00019 * 7 6 5 9 9 N 1.46508 * 109.46881 * 219.99967 * 7 6 5 10 10 C 1.34778 * 119.99624 * 155.00560 * 9 7 6 11 11 O 1.21694 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.46371 * 120.00013 * 180.02562 * 10 9 7 13 13 H 1.08003 * 119.99851 * 359.97438 * 12 10 9 14 14 C 1.40049 * 120.00082 * 179.97438 * 12 10 9 15 15 N 1.30670 * 120.00074 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99979 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46972 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47029 * 119.99464 * 16 14 12 19 19 H 1.48493 * 109.47116 * 239.99766 * 16 14 12 20 20 C 1.52997 * 109.46837 * 100.00477 * 7 6 5 21 21 C 1.53005 * 109.47006 * 299.99644 * 20 7 6 22 22 C 1.53000 * 109.47432 * 59.99817 * 20 7 6 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 0.96996 * 119.99736 * 335.00132 * 9 7 6 31 31 H 0.96996 * 119.99890 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.46859 * 180.02562 * 20 7 6 33 33 H 1.08996 * 109.47113 * 180.02562 * 21 20 7 34 34 H 1.08994 * 109.46972 * 300.00316 * 21 20 7 35 35 H 1.09002 * 109.46937 * 60.00506 * 21 20 7 36 36 H 1.09000 * 109.47328 * 60.00074 * 22 20 7 37 37 H 1.09006 * 109.47116 * 180.02562 * 22 20 7 38 38 H 1.09002 * 109.47331 * 299.99996 * 22 20 7 39 39 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 40 40 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0119 8 1 5.0130 4.9048 0.3352 9 7 3.2690 5.9363 0.8769 10 6 3.9159 6.9809 1.4309 11 8 5.0956 7.1615 1.1932 12 6 3.1997 7.8975 2.3194 13 1 2.1527 7.7369 2.5307 14 6 3.8719 8.9826 2.8955 15 7 5.1387 9.1766 2.6402 16 14 2.9577 10.1528 4.0288 17 1 1.5439 9.7162 4.1549 18 1 3.5985 10.1463 5.3683 19 1 3.0039 11.5256 3.4645 20 6 3.9879 5.5831 -1.4339 21 6 4.7368 4.6247 -2.3622 22 6 2.5464 5.7428 -1.9211 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 2.3288 5.7921 1.0666 31 1 5.6044 9.9279 3.0395 32 1 4.4832 6.5541 -1.4386 33 1 4.7385 5.0271 -3.3751 34 1 5.7637 4.5109 -2.0150 35 1 4.2419 3.6535 -2.3575 36 1 2.0129 6.4256 -1.2598 37 1 2.5477 6.1446 -2.9344 38 1 2.0515 4.7717 -1.9164 39 1 1.3342 4.5115 -0.0001 40 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153522559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -84.094640 kcal Electronic energy + Delta-G solvation = -21731.303426 eV Core-core repulsion = 18510.038468 eV Total energy + Delta-G solvation = -3221.264959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38114 -40.00538 -38.47473 -36.57698 -34.62915 -33.59933 -32.07893 -31.14992 -28.80353 -28.07262 -27.96243 -26.12964 -23.57420 -22.67312 -21.96096 -20.24136 -19.46799 -18.91235 -17.55497 -17.02805 -16.88599 -16.58360 -16.10070 -15.88406 -15.70614 -15.19818 -14.75871 -14.59534 -14.34263 -14.21300 -13.95101 -13.56395 -13.37163 -13.00387 -12.89818 -12.81831 -12.78107 -12.60577 -12.47496 -12.20062 -11.98059 -11.81316 -11.77546 -11.63964 -11.37552 -10.93065 -9.90737 -9.82517 -9.39981 -9.01197 -8.26612 -6.82915 0.40573 0.44743 1.40011 1.40220 1.57721 2.25227 2.41648 2.50326 2.77698 3.19012 3.64564 3.78834 3.86587 3.98954 4.10374 4.22716 4.33862 4.35051 4.44529 4.45994 4.55583 4.64805 4.78080 4.78781 4.82424 4.90693 5.00648 5.06337 5.12374 5.23350 5.28192 5.33521 5.39090 5.44457 5.51393 5.69378 5.80442 5.91634 6.26356 6.35155 6.48628 6.89304 7.58884 8.53414 8.70986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.004541 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.266116 B = 6164.104917 C = 6813.954731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.155 4.155 5 C -0.077 4.077 6 C -0.118 4.118 7 C 0.204 3.796 8 H 0.044 0.956 9 N -0.744 5.744 10 C 0.542 3.458 11 O -0.629 6.629 12 C -0.574 4.574 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.995 3.005 17 H -0.247 1.247 18 H -0.270 1.270 19 H -0.269 1.269 20 C -0.101 4.101 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.075 4.075 24 C -0.201 4.201 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.390 0.610 31 H 0.273 0.727 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -15.305 -6.807 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.173 4.173 5 C -0.096 4.096 6 C -0.119 4.119 7 C 0.099 3.901 8 H 0.063 0.937 9 N -0.398 5.398 10 C 0.346 3.654 11 O -0.516 6.516 12 C -0.610 4.610 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.815 3.185 17 H -0.170 1.170 18 H -0.195 1.195 19 H -0.194 1.194 20 C -0.121 4.121 21 C -0.191 4.191 22 C -0.194 4.194 23 C -0.093 4.093 24 C -0.220 4.220 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.350 -15.289 -6.962 19.732 hybrid contribution -0.357 0.940 0.633 1.188 sum -10.706 -14.349 -6.328 18.989 Atomic orbital electron populations 1.23338 0.76572 1.05516 1.02242 1.86039 1.23368 1.26568 1.88744 1.19136 0.92474 0.84643 0.96710 1.20520 0.91883 0.98409 1.06495 1.20914 1.00221 0.90890 0.97566 1.19780 0.94437 0.93825 1.03831 1.19374 0.94647 0.86305 0.89803 0.93749 1.45911 1.13219 1.29334 1.51330 1.18540 0.86213 0.80510 0.80148 1.90552 1.18603 1.75833 1.66617 1.21447 0.98242 1.11449 1.29900 0.89709 1.26926 0.95274 0.99216 0.97071 1.70196 1.11291 1.26651 1.36999 0.85010 0.79322 0.77057 0.77130 1.17013 1.19477 1.19378 1.21371 0.97804 0.98214 0.94682 1.21741 0.99476 0.99243 0.98688 1.21849 0.95038 1.02100 1.00437 1.20888 0.93482 0.97921 0.97025 1.21383 1.01109 0.91333 1.08163 0.92004 0.91613 0.86272 0.83920 0.85103 0.77504 0.91707 0.94945 0.91698 0.93506 0.91282 0.93756 0.92247 0.90747 0.85150 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.04 10.50 -92.47 -0.97 -8.02 16 3 C 0.12 2.76 6.69 22.51 0.15 2.91 16 4 C -0.15 -3.84 9.99 22.37 0.22 -3.62 16 5 C -0.08 -2.17 8.70 22.25 0.19 -1.98 16 6 C -0.12 -3.67 3.80 -19.85 -0.08 -3.75 16 7 C 0.20 8.10 2.08 44.24 0.09 8.19 16 8 H 0.04 2.08 7.43 -2.39 -0.02 2.06 16 9 N -0.74 -33.80 4.26 -450.38 -1.92 -35.72 16 10 C 0.54 31.69 7.71 86.36 0.67 32.36 16 11 O -0.63 -42.47 14.68 -4.33 -0.06 -42.53 16 12 C -0.57 -32.83 9.54 24.83 0.24 -32.59 16 13 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 14 C 0.03 1.69 5.50 85.30 0.47 2.16 16 15 N -0.82 -50.89 11.83 21.84 0.26 -50.63 16 16 Si 1.00 41.41 29.56 68.60 2.03 43.43 16 17 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 C -0.10 -3.66 2.90 -10.79 -0.03 -3.69 16 21 C -0.13 -3.90 8.79 71.98 0.63 -3.26 16 22 C -0.14 -4.15 7.95 71.98 0.57 -3.58 16 23 C -0.07 -2.01 6.83 22.25 0.15 -1.86 16 24 C -0.20 -4.56 9.04 22.36 0.20 -4.36 16 25 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 26 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 27 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.13 3.50 8.03 -2.91 -0.02 3.48 16 30 H 0.39 15.54 6.85 -92.71 -0.63 14.90 16 31 H 0.27 15.30 8.29 -92.71 -0.77 14.54 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.80 6.64 -2.39 -0.02 1.78 16 36 H 0.04 1.45 7.60 -2.39 -0.02 1.44 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 1.94 5.59 -2.39 -0.01 1.93 16 39 H 0.13 3.35 6.08 -2.91 -0.02 3.33 16 40 H 0.15 2.54 6.30 -2.91 -0.02 2.52 16 Total: -1.00 -76.87 326.22 4.34 -72.52 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.41 Total: 32.68 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.60 Total: -11.73 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.66 Total: -86.35 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.03 Total: -50.55 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -76.87 4.34 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153522559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.573 kcal (2) G-P(sol) polarization free energy of solvation -76.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds