Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 C 1.52995 * 109.47401 * 239.99517 * 2 1 3 5 5 O 1.45200 * 109.46578 * 119.99468 * 2 1 3 6 6 C 1.34223 * 117.00358 * 60.00514 * 5 2 1 7 7 O 1.20828 * 120.00008 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00435 * 179.97438 * 6 5 2 9 9 H 1.09003 * 109.47477 * 300.00047 * 8 6 5 10 10 N 1.46500 * 109.47614 * 179.97438 * 8 6 5 11 11 C 1.36932 * 120.00368 * 154.99572 * 10 8 6 12 12 H 1.08000 * 119.99948 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00272 * 179.97438 * 11 10 8 14 14 N 1.31621 * 119.99915 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99602 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47044 * 89.99888 * 15 13 11 17 17 H 1.48503 * 109.46791 * 209.99461 * 15 13 11 18 18 H 1.48499 * 109.47175 * 329.99268 * 15 13 11 19 19 C 1.50703 * 109.47313 * 59.99594 * 8 6 5 20 20 C 1.38235 * 120.00292 * 260.00391 * 19 8 6 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 79.97683 * 19 8 6 25 25 H 1.08997 * 109.47904 * 300.00473 * 1 2 3 26 26 H 1.09002 * 109.47230 * 60.00808 * 1 2 3 27 27 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46826 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46822 * 299.99114 * 3 2 1 30 30 H 1.08993 * 109.47620 * 59.99463 * 3 2 1 31 31 H 1.08998 * 109.47135 * 300.00371 * 4 2 1 32 32 H 1.08998 * 109.47051 * 60.00390 * 4 2 1 33 33 H 1.09004 * 109.47014 * 179.97438 * 4 2 1 34 34 H 0.96997 * 119.99726 * 335.00137 * 10 8 6 35 35 H 0.97008 * 119.99399 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9560 -2.5025 0.5084 8 6 2.1181 -2.7435 2.5438 9 1 3.2076 -2.7724 2.5594 10 7 1.5937 -4.1099 2.4779 11 6 2.2453 -5.1253 3.1255 12 1 3.1456 -4.9188 3.6852 13 6 1.7482 -6.4199 3.0634 14 7 2.3743 -7.3958 3.6863 15 14 0.1907 -6.7768 2.0959 16 1 0.5450 -7.1110 0.6930 17 1 -0.5233 -7.9236 2.7127 18 1 -0.6879 -5.5797 2.1130 19 6 1.6155 -2.0730 3.7965 20 6 2.4573 -1.2574 4.5292 21 6 1.9962 -0.6420 5.6779 22 6 0.6929 -0.8416 6.0934 23 6 -0.1493 -1.6561 5.3599 24 6 0.3125 -2.2733 4.2124 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7209 -1.2493 34 1 0.7850 -4.2952 1.9755 35 1 2.0270 -8.3006 3.6426 36 1 3.4753 -1.1009 4.2042 37 1 2.6539 -0.0051 6.2507 38 1 0.3339 -0.3644 6.9933 39 1 -1.1674 -1.8124 5.6846 40 1 -0.3452 -2.9106 3.6399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154071228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -46.091712 kcal Electronic energy + Delta-G solvation = -22260.873053 eV Core-core repulsion = 19041.256025 eV Total energy + Delta-G solvation = -3219.617028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65146 -38.78503 -36.92740 -34.84769 -33.91939 -32.03408 -30.52085 -30.02249 -27.42393 -27.37136 -26.90308 -23.20302 -22.35371 -21.94229 -20.48326 -19.29708 -18.17366 -16.88287 -16.44047 -16.01819 -15.72429 -14.95678 -14.74055 -14.36083 -14.15646 -14.11311 -13.58717 -13.10089 -13.01638 -12.72110 -12.53205 -12.37626 -12.19200 -12.05306 -11.87431 -11.83363 -11.47635 -11.34875 -11.07170 -11.02330 -10.77486 -10.60696 -10.23971 -10.21347 -9.80997 -9.61788 -9.11402 -8.47718 -8.27779 -7.46391 -5.85768 -3.25133 1.74121 1.85170 2.61237 2.92197 3.37715 3.43144 3.45369 4.21309 4.53975 4.73001 4.76891 4.90500 4.99162 5.18659 5.21666 5.35168 5.41142 5.43830 5.49222 5.51160 5.60328 5.66308 5.71986 5.84992 5.87367 5.89253 5.95901 5.99160 6.07545 6.28308 6.34002 6.37234 6.47670 6.76864 6.85113 6.90464 7.11134 7.42115 7.83639 8.18440 8.31572 9.06965 9.78087 9.95006 11.30918 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.007570 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.753893 B = 3697.865381 C = 5052.394011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.348 6.348 6 C 0.465 3.535 7 O -0.500 6.500 8 C 0.227 3.773 9 H 0.102 0.898 10 N -0.723 5.723 11 C -0.252 4.252 12 H 0.095 0.905 13 C 0.017 3.983 14 N -0.924 5.924 15 Si 0.881 3.119 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.083 4.083 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.086 4.086 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.374 0.626 35 H 0.262 0.738 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 18.411 -3.342 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.078 3.922 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.264 6.264 6 C 0.308 3.692 7 O -0.387 6.387 8 C 0.115 3.885 9 H 0.119 0.881 10 N -0.367 5.367 11 C -0.381 4.381 12 H 0.113 0.887 13 C -0.180 4.180 14 N -0.570 5.570 15 Si 0.710 3.290 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.105 4.105 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.284 18.081 -3.514 18.561 hybrid contribution -1.185 -0.470 -0.696 1.453 sum -3.470 17.611 -4.209 18.436 Atomic orbital electron populations 1.22473 0.94352 1.04794 1.02294 1.22107 0.94273 0.92222 0.83609 1.21821 1.02122 0.92888 1.02699 1.22489 1.01671 1.03375 0.96489 1.86594 1.69880 1.25587 1.44389 1.24339 0.77046 0.80121 0.87731 1.90517 1.35266 1.69703 1.43231 1.18629 0.99250 0.84628 0.85989 0.88070 1.42620 1.30630 1.01498 1.61922 1.18955 1.07891 0.85956 1.25299 0.88712 1.24597 0.98434 0.95388 0.99541 1.69695 1.40672 1.00276 1.46375 0.86609 0.84284 0.77695 0.80373 1.20727 1.21530 1.20056 1.20564 0.94215 0.96086 0.97801 1.20964 0.99438 0.96670 0.95089 1.20995 0.95831 1.00655 0.97039 1.21017 0.94303 0.99605 0.99645 1.21058 0.99580 0.98108 0.95761 1.20947 0.95615 0.97517 0.96377 0.92080 0.91476 0.89752 0.91544 0.90760 0.91556 0.89618 0.91462 0.92022 0.79019 0.92779 0.86191 0.86591 0.86815 0.86680 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.11 1.50 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 5 O -0.35 -5.52 9.81 -39.24 -0.38 -5.91 16 6 C 0.47 8.62 6.61 36.00 0.24 8.86 16 7 O -0.50 -10.12 11.34 -18.75 -0.21 -10.33 16 8 C 0.23 4.53 3.00 -70.24 -0.21 4.32 16 9 H 0.10 1.95 7.94 -51.93 -0.41 1.54 16 10 N -0.72 -17.35 4.04 -55.69 -0.22 -17.57 16 11 C -0.25 -6.99 10.40 -15.06 -0.16 -7.15 16 12 H 0.10 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.02 0.51 5.50 -17.43 -0.10 0.41 16 14 N -0.92 -28.59 13.97 55.49 0.78 -27.81 16 15 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 16 16 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.27 -6.72 6.52 56.52 0.37 -6.35 16 19 C -0.08 -1.54 4.84 -104.62 -0.51 -2.05 16 20 C -0.10 -1.65 9.67 -39.59 -0.38 -2.03 16 21 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 22 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 23 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.09 -1.60 9.32 -39.58 -0.37 -1.97 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.31 5.89 -51.93 -0.31 1.00 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.34 5.89 -51.93 -0.31 1.03 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.37 9.21 4.85 -40.82 -0.20 9.01 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.12 2.32 7.72 -52.49 -0.41 1.92 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -31.48 331.69 -7.46 -38.93 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.87 Total: 10.11 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.83 Total: -10.15 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.55 Total: -45.39 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.60 Total: -16.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.48 -7.46 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154071228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.157 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds