Wall clock time and date at job start Mon Mar 30 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 C 1.52995 * 109.47401 * 239.99517 * 2 1 3 5 5 O 1.45200 * 109.46578 * 119.99468 * 2 1 3 6 6 C 1.34223 * 117.00358 * 60.00514 * 5 2 1 7 7 O 1.20828 * 120.00008 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00435 * 179.97438 * 6 5 2 9 9 H 1.09003 * 109.47477 * 300.00047 * 8 6 5 10 10 N 1.46500 * 109.47614 * 179.97438 * 8 6 5 11 11 C 1.36932 * 120.00368 * 154.99572 * 10 8 6 12 12 H 1.08000 * 119.99948 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00272 * 179.97438 * 11 10 8 14 14 N 1.31621 * 119.99915 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99602 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47044 * 89.99888 * 15 13 11 17 17 H 1.48503 * 109.46791 * 209.99461 * 15 13 11 18 18 H 1.48499 * 109.47175 * 329.99268 * 15 13 11 19 19 C 1.50703 * 109.47313 * 59.99594 * 8 6 5 20 20 C 1.38235 * 120.00292 * 260.00391 * 19 8 6 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 79.97683 * 19 8 6 25 25 H 1.08997 * 109.47904 * 300.00473 * 1 2 3 26 26 H 1.09002 * 109.47230 * 60.00808 * 1 2 3 27 27 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46826 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46822 * 299.99114 * 3 2 1 30 30 H 1.08993 * 109.47620 * 59.99463 * 3 2 1 31 31 H 1.08998 * 109.47135 * 300.00371 * 4 2 1 32 32 H 1.08998 * 109.47051 * 60.00390 * 4 2 1 33 33 H 1.09004 * 109.47014 * 179.97438 * 4 2 1 34 34 H 0.96997 * 119.99726 * 335.00137 * 10 8 6 35 35 H 0.97008 * 119.99399 * 180.02562 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9560 -2.5025 0.5084 8 6 2.1181 -2.7435 2.5438 9 1 3.2076 -2.7724 2.5594 10 7 1.5937 -4.1099 2.4779 11 6 2.2453 -5.1253 3.1255 12 1 3.1456 -4.9188 3.6852 13 6 1.7482 -6.4199 3.0634 14 7 2.3743 -7.3958 3.6863 15 14 0.1907 -6.7768 2.0959 16 1 0.5450 -7.1110 0.6930 17 1 -0.5233 -7.9236 2.7127 18 1 -0.6879 -5.5797 2.1130 19 6 1.6155 -2.0730 3.7965 20 6 2.4573 -1.2574 4.5292 21 6 1.9962 -0.6420 5.6779 22 6 0.6929 -0.8416 6.0934 23 6 -0.1493 -1.6561 5.3599 24 6 0.3125 -2.2733 4.2124 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7209 -1.2493 34 1 0.7850 -4.2952 1.9755 35 1 2.0270 -8.3006 3.6426 36 1 3.4753 -1.1009 4.2042 37 1 2.6539 -0.0051 6.2507 38 1 0.3339 -0.3644 6.9933 39 1 -1.1674 -1.8124 5.6846 40 1 -0.3452 -2.9106 3.6399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154071228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:44 Heat of formation + Delta-G solvation = -63.817537 kcal Electronic energy + Delta-G solvation = -22261.641703 eV Core-core repulsion = 19041.256025 eV Total energy + Delta-G solvation = -3220.385678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01758 -40.06147 -38.27297 -36.59158 -35.10191 -33.94462 -31.90105 -31.56646 -28.50330 -28.38936 -28.28221 -25.08849 -23.66738 -23.24880 -21.83426 -20.72450 -20.03681 -18.22354 -17.69214 -17.55779 -17.06509 -16.64453 -16.07189 -15.94536 -15.56507 -15.26095 -14.86060 -14.59816 -14.44880 -14.18196 -13.84464 -13.63534 -13.40476 -13.30983 -13.09776 -12.99182 -12.92961 -12.85721 -12.49385 -12.30487 -12.25203 -12.02425 -11.90540 -11.78450 -11.39671 -11.25241 -11.01300 -9.73488 -9.67480 -9.42172 -8.09822 -5.46444 0.47214 0.60015 1.16208 1.31765 1.34893 1.40814 1.62388 2.40550 2.93155 3.21725 3.49705 3.64400 3.77017 3.79392 3.95450 3.98954 4.05662 4.25035 4.35443 4.39412 4.57055 4.58614 4.73516 4.74785 4.81200 4.81480 4.88032 4.88623 5.10824 5.13857 5.23209 5.25512 5.30371 5.48791 5.62949 5.64328 5.67600 5.79582 6.11881 6.20316 6.75818 6.95364 7.64996 7.84572 9.10216 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.007570 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.753893 B = 3697.865381 C = 5052.394011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.345 6.345 6 C 0.474 3.526 7 O -0.521 6.521 8 C 0.221 3.779 9 H 0.103 0.897 10 N -0.730 5.730 11 C -0.229 4.229 12 H 0.071 0.929 13 C -0.043 4.043 14 N -0.970 5.970 15 Si 0.940 3.060 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.370 0.630 35 H 0.261 0.739 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 21.678 -3.155 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.066 3.934 3 C -0.188 4.188 4 C -0.238 4.238 5 O -0.261 6.261 6 C 0.317 3.683 7 O -0.410 6.410 8 C 0.110 3.890 9 H 0.120 0.880 10 N -0.375 5.375 11 C -0.360 4.360 12 H 0.089 0.911 13 C -0.236 4.236 14 N -0.619 5.619 15 Si 0.768 3.232 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.134 4.134 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.205 0.795 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.702 21.425 -3.333 21.850 hybrid contribution -0.998 -1.276 -0.726 1.776 sum -3.701 20.149 -4.059 20.884 Atomic orbital electron populations 1.22443 0.94238 1.03147 1.03781 1.22589 0.94635 0.93782 0.82424 1.21847 1.02496 0.90236 1.04260 1.22467 1.01901 1.01771 0.97669 1.86559 1.69559 1.24006 1.45986 1.23851 0.76731 0.80997 0.86748 1.90521 1.36294 1.70465 1.43756 1.18771 0.99205 0.83260 0.87735 0.87970 1.42515 1.30448 1.02657 1.61832 1.18894 1.06540 0.86820 1.23697 0.91111 1.25236 1.01583 0.95457 1.01337 1.69829 1.42662 1.00627 1.48830 0.85652 0.81141 0.77683 0.78756 1.20808 1.21359 1.18960 1.20368 0.94912 0.97887 0.97516 1.21230 0.99868 0.96352 0.95562 1.21442 0.96414 0.99886 0.96128 1.21472 0.93960 0.98286 1.00165 1.21337 1.00967 0.97892 0.94883 1.20938 0.95662 0.98843 0.97932 0.91927 0.88640 0.92899 0.91004 0.87965 0.91212 0.92885 0.88624 0.91621 0.79500 0.93018 0.84604 0.82925 0.83140 0.84777 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 8.37 71.98 0.60 -3.75 16 2 C 0.10 2.48 1.13 -10.79 -0.01 2.46 16 3 C -0.13 -2.15 8.85 71.98 0.64 -1.51 16 4 C -0.18 -4.39 8.37 71.98 0.60 -3.79 16 5 O -0.34 -10.72 9.81 -51.34 -0.50 -11.22 16 6 C 0.47 17.82 6.61 71.23 0.47 18.29 16 7 O -0.52 -21.69 11.34 21.96 0.25 -21.44 16 8 C 0.22 9.00 3.00 43.50 0.13 9.13 16 9 H 0.10 4.06 7.94 -2.39 -0.02 4.04 16 10 N -0.73 -36.11 4.04 -330.09 -1.33 -37.44 16 11 C -0.23 -13.16 10.40 84.04 0.87 -12.28 16 12 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 13 C -0.04 -2.58 5.50 84.86 0.47 -2.12 16 14 N -0.97 -61.96 13.97 21.65 0.30 -61.65 16 15 Si 0.94 47.75 27.74 68.60 1.90 49.65 16 16 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 17 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 18 H -0.26 -12.80 6.52 99.48 0.65 -12.15 16 19 C -0.10 -3.85 4.84 -19.87 -0.10 -3.94 16 20 C -0.11 -3.39 9.67 22.27 0.22 -3.18 16 21 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 22 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 23 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 24 C -0.12 -4.30 9.32 22.27 0.21 -4.10 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.64 5.89 -2.38 -0.01 1.63 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.66 5.89 -2.39 -0.01 1.65 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.37 18.72 4.85 -92.71 -0.45 18.27 16 35 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 36 H 0.14 3.57 8.04 -2.91 -0.02 3.55 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.09 3.85 7.72 -2.91 -0.02 3.83 16 Total: -1.00 -70.78 331.69 5.91 -64.87 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.52 Total: 31.42 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.77 Total: -14.18 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -1.03 Total: -99.09 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.25 Total: -32.66 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Total: -70.78 5.91 -64.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154071228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.052 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds