Wall clock time and date at job start Mon Mar 30 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47069 * 240.00008 * 2 1 3 5 5 C 1.50699 * 109.46971 * 60.00063 * 4 2 1 6 6 H 1.07991 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99758 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00386 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46913 * 60.00049 * 9 7 5 11 11 H 1.48496 * 109.46841 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46854 * 299.99928 * 9 7 5 13 13 C 1.53000 * 109.47339 * 119.99843 * 2 1 3 14 14 N 1.46502 * 109.47062 * 300.00273 * 13 2 1 15 15 C 1.39926 * 119.99551 * 179.97438 * 14 13 2 16 16 C 1.38862 * 120.01112 * 0.02562 * 15 14 13 17 17 C 1.38193 * 120.06210 * 179.77685 * 16 15 14 18 18 C 1.38527 * 120.12617 * 0.40222 * 17 16 15 19 19 C 1.39271 * 119.95295 * 359.59609 * 18 17 16 20 20 C 1.38515 * 119.89658 * 0.20142 * 19 18 17 21 21 O 1.36503 * 108.65001 * 180.25061 * 19 18 17 22 22 C 1.43982 * 105.50463 * 342.69413 * 21 19 18 23 23 O 1.36635 * 131.44235 * 179.89900 * 18 17 16 24 24 H 1.08998 * 109.46684 * 299.99929 * 1 2 3 25 25 H 1.08993 * 109.46982 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47583 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46638 * 300.00379 * 3 2 1 29 29 H 1.09006 * 109.46908 * 59.99792 * 3 2 1 30 30 H 1.09008 * 109.47142 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47581 * 299.99815 * 4 2 1 32 32 H 0.96993 * 120.00713 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47232 * 179.97438 * 13 2 1 34 34 H 1.09007 * 109.46648 * 60.00224 * 13 2 1 35 35 H 0.96998 * 120.00293 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.96378 * 0.02562 * 16 15 14 37 37 H 1.08001 * 119.93289 * 180.30774 * 17 16 15 38 38 H 1.08001 * 120.01452 * 180.02562 * 20 19 18 39 39 H 1.08999 * 110.56858 * 268.59105 * 22 21 19 40 40 H 1.08996 * 110.56906 * 145.72135 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6281 -1.5502 -3.8527 9 14 1.2479 0.3986 -5.2572 10 1 1.7419 1.7991 -5.2571 11 1 1.7440 -0.3006 -6.4696 12 1 -0.2371 0.3975 -5.2572 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8894 -0.5090 3.7163 16 6 2.6878 -1.6380 3.8438 17 6 3.0257 -2.1087 5.0984 18 6 2.5625 -1.4611 6.2320 19 6 1.7616 -0.3285 6.1075 20 6 1.4266 0.1453 4.8498 21 8 1.4447 0.1215 7.3566 22 6 1.7185 -0.9794 8.2433 23 8 2.7470 -1.7205 7.5607 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7209 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8624 -1.8817 -4.7336 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3565 36 1 3.0482 -2.1462 2.9617 37 1 3.6509 -2.9840 5.1952 38 1 0.8060 1.0237 4.7510 39 1 0.8282 -1.5939 8.3771 40 1 2.0821 -0.6158 9.2043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155552910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:57 Heat of formation + Delta-G solvation = -48.087843 kcal Electronic energy + Delta-G solvation = -21089.143487 eV Core-core repulsion = 17869.439900 eV Total energy + Delta-G solvation = -3219.703587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.04387 -38.86880 -37.05173 -36.21320 -33.85060 -32.22228 -30.50710 -28.71648 -27.02204 -26.52888 -25.94215 -25.53837 -23.18442 -22.76890 -21.68773 -18.39778 -17.97833 -17.77441 -17.20867 -16.56782 -16.28596 -15.41948 -14.76740 -14.43274 -14.41972 -14.35863 -13.81639 -13.53950 -13.12514 -13.03157 -12.98513 -12.90427 -12.40214 -12.35821 -12.07993 -11.45526 -11.12218 -11.04642 -10.93513 -10.89340 -10.64819 -10.40661 -10.29070 -9.91231 -9.41068 -9.24638 -8.98030 -8.55050 -8.39295 -7.09574 -6.03816 -4.04998 1.26995 1.45860 2.74186 3.29854 3.35299 3.36524 3.40598 3.71807 3.80043 4.42511 4.58498 4.60427 4.79881 5.08581 5.16112 5.25681 5.31908 5.41469 5.55513 5.58433 5.72701 5.84831 6.09404 6.12264 6.14140 6.19490 6.20606 6.33707 6.34787 6.44157 6.60825 6.62094 6.99931 7.04227 7.06112 7.14189 7.46243 7.58030 7.70852 7.88306 7.94641 8.37044 8.99448 9.58431 11.07645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049719 B = 0.003076 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.034160 B = 9100.987284 C = 9455.020255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.130 3.870 14 N -0.731 5.731 15 C 0.241 3.759 16 C -0.193 4.193 17 C -0.045 4.045 18 C -0.048 4.048 19 C 0.081 3.919 20 C -0.187 4.187 21 O -0.314 6.314 22 C 0.215 3.785 23 O -0.315 6.315 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 1.048 19.352 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.007 3.993 14 N -0.360 5.360 15 C 0.134 3.866 16 C -0.216 4.216 17 C -0.064 4.064 18 C -0.093 4.093 19 C 0.035 3.965 20 C -0.211 4.211 21 O -0.230 6.230 22 C 0.103 3.897 23 O -0.232 6.232 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.775 0.901 19.224 19.327 hybrid contribution -0.580 0.693 -0.708 1.148 sum -2.355 1.594 18.516 18.733 Atomic orbital electron populations 1.21749 0.95255 1.01124 1.00259 1.20872 0.95507 0.95894 0.94874 1.21752 1.00488 0.95902 1.00259 1.19087 0.96278 0.95166 0.89534 1.21146 1.31244 1.12133 0.90546 0.92332 1.25000 0.95270 0.95066 0.99073 1.69938 1.36879 1.23051 1.23602 0.86713 0.79172 0.79798 0.82647 1.20314 1.21369 1.20314 1.21667 0.98331 0.95865 0.83440 1.45069 1.56356 1.32617 1.01910 1.17419 0.92049 0.91994 0.85151 1.20469 1.05068 0.99076 0.97011 1.19765 0.99527 0.98873 0.88265 1.19446 1.06082 0.99250 0.84497 1.19351 0.97666 0.93432 0.86001 1.19255 1.09402 1.05186 0.87249 1.87314 1.83841 1.37111 1.14733 1.25481 0.90035 0.81315 0.92872 1.87321 1.51731 1.68891 1.15215 0.95163 0.91534 0.93404 0.93388 0.91542 0.95150 0.96380 0.96388 0.92956 0.92280 0.92305 0.76360 0.84386 0.85082 0.85253 0.90452 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 2 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.58 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.03 3.80 -4.04 -0.02 2.01 16 14 N -0.73 -9.94 5.14 -58.60 -0.30 -10.24 16 15 C 0.24 3.25 6.65 -83.72 -0.56 2.69 16 16 C -0.19 -2.52 9.31 -39.37 -0.37 -2.89 16 17 C -0.04 -0.57 10.05 -39.49 -0.40 -0.96 16 18 C -0.05 -0.65 7.15 -39.09 -0.28 -0.93 16 19 C 0.08 1.10 7.15 -39.10 -0.28 0.83 16 20 C -0.19 -2.47 9.91 -39.26 -0.39 -2.86 16 21 O -0.31 -3.98 11.40 -45.70 -0.52 -4.50 16 22 C 0.22 2.04 8.89 101.05 0.90 2.94 16 23 O -0.31 -3.99 11.41 -46.13 -0.53 -4.52 16 24 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 34 H 0.06 0.92 7.95 -51.92 -0.41 0.51 16 35 H 0.40 5.09 6.18 -40.82 -0.25 4.84 16 36 H 0.14 1.71 6.72 -52.49 -0.35 1.36 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -29.34 323.50 -7.75 -37.08 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.65 Total: 2.19 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.34 Total: -15.64 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.43 Total: -35.38 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.05 Total: -9.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.34 -7.75 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155552910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.004 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds