Wall clock time and date at job start Mon Mar 30 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47069 * 240.00008 * 2 1 3 5 5 C 1.50699 * 109.46971 * 60.00063 * 4 2 1 6 6 H 1.07991 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99758 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00386 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46913 * 60.00049 * 9 7 5 11 11 H 1.48496 * 109.46841 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46854 * 299.99928 * 9 7 5 13 13 C 1.53000 * 109.47339 * 119.99843 * 2 1 3 14 14 N 1.46502 * 109.47062 * 300.00273 * 13 2 1 15 15 C 1.39926 * 119.99551 * 179.97438 * 14 13 2 16 16 C 1.38862 * 120.01112 * 0.02562 * 15 14 13 17 17 C 1.38193 * 120.06210 * 179.77685 * 16 15 14 18 18 C 1.38527 * 120.12617 * 0.40222 * 17 16 15 19 19 C 1.39271 * 119.95295 * 359.59609 * 18 17 16 20 20 C 1.38515 * 119.89658 * 0.20142 * 19 18 17 21 21 O 1.36503 * 108.65001 * 180.25061 * 19 18 17 22 22 C 1.43982 * 105.50463 * 342.69413 * 21 19 18 23 23 O 1.36635 * 131.44235 * 179.89900 * 18 17 16 24 24 H 1.08998 * 109.46684 * 299.99929 * 1 2 3 25 25 H 1.08993 * 109.46982 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47583 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46638 * 300.00379 * 3 2 1 29 29 H 1.09006 * 109.46908 * 59.99792 * 3 2 1 30 30 H 1.09008 * 109.47142 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47581 * 299.99815 * 4 2 1 32 32 H 0.96993 * 120.00713 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47232 * 179.97438 * 13 2 1 34 34 H 1.09007 * 109.46648 * 60.00224 * 13 2 1 35 35 H 0.96998 * 120.00293 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.96378 * 0.02562 * 16 15 14 37 37 H 1.08001 * 119.93289 * 180.30774 * 17 16 15 38 38 H 1.08001 * 120.01452 * 180.02562 * 20 19 18 39 39 H 1.08999 * 110.56858 * 268.59105 * 22 21 19 40 40 H 1.08996 * 110.56906 * 145.72135 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6281 -1.5502 -3.8527 9 14 1.2479 0.3986 -5.2572 10 1 1.7419 1.7991 -5.2571 11 1 1.7440 -0.3006 -6.4696 12 1 -0.2371 0.3975 -5.2572 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8894 -0.5090 3.7163 16 6 2.6878 -1.6380 3.8438 17 6 3.0257 -2.1087 5.0984 18 6 2.5625 -1.4611 6.2320 19 6 1.7616 -0.3285 6.1075 20 6 1.4266 0.1453 4.8498 21 8 1.4447 0.1215 7.3566 22 6 1.7185 -0.9794 8.2433 23 8 2.7470 -1.7205 7.5607 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7209 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8624 -1.8817 -4.7336 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3565 36 1 3.0482 -2.1462 2.9617 37 1 3.6509 -2.9840 5.1952 38 1 0.8060 1.0237 4.7510 39 1 0.8282 -1.5939 8.3771 40 1 2.0821 -0.6158 9.2043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155552910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:57 Heat of formation + Delta-G solvation = -65.067295 kcal Electronic energy + Delta-G solvation = -21089.879772 eV Core-core repulsion = 17869.439900 eV Total energy + Delta-G solvation = -3220.439871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.95406 -40.01893 -38.36320 -37.13461 -35.27300 -34.00045 -31.50730 -29.90111 -28.74374 -27.93798 -27.17548 -26.45196 -24.83742 -23.84257 -22.82644 -19.81578 -18.99686 -18.71222 -18.35374 -18.11788 -17.52402 -16.56135 -16.37238 -15.74971 -15.68718 -15.35248 -14.81670 -14.75202 -14.49133 -14.38816 -14.24635 -13.92028 -13.85872 -13.59976 -13.44339 -12.89839 -12.73273 -12.65159 -12.30192 -12.25994 -12.05874 -12.03767 -11.89200 -11.44862 -10.95859 -10.82435 -10.48544 -10.43703 -9.53479 -8.13635 -8.12843 -6.19408 0.27618 0.45101 1.43148 1.44115 1.51378 1.83220 2.42674 2.50308 2.74142 2.80368 3.21894 3.64503 3.90338 4.01680 4.10925 4.14704 4.14912 4.21127 4.31214 4.38953 4.63581 4.71358 4.77987 4.79802 4.92722 5.00743 5.13174 5.14813 5.18144 5.22928 5.32328 5.44899 5.48179 5.53024 5.55223 5.58671 5.84368 5.92505 6.14152 6.31647 6.40778 6.84838 6.95710 7.47976 8.99121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049719 B = 0.003076 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.034160 B = 9100.987284 C = 9455.020255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.145 3.855 14 N -0.726 5.726 15 C 0.232 3.768 16 C -0.199 4.199 17 C -0.048 4.048 18 C -0.057 4.057 19 C 0.068 3.932 20 C -0.188 4.188 21 O -0.326 6.326 22 C 0.206 3.794 23 O -0.329 6.329 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.063 0.937 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.406 0.594 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 2.154 20.819 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.004 3.996 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.194 1.194 13 C 0.020 3.980 14 N -0.356 5.356 15 C 0.127 3.873 16 C -0.222 4.222 17 C -0.067 4.067 18 C -0.103 4.103 19 C 0.023 3.977 20 C -0.212 4.212 21 O -0.242 6.242 22 C 0.095 3.905 23 O -0.246 6.246 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.116 0.884 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.735 2.024 20.723 21.001 hybrid contribution -0.275 0.316 -1.031 1.113 sum -3.010 2.340 19.692 20.058 Atomic orbital electron populations 1.21675 0.94181 1.00922 1.01053 1.20678 0.96266 0.96089 0.93485 1.21680 0.99973 0.95159 1.01047 1.18955 0.94458 0.94255 0.91907 1.21580 1.30374 1.12053 0.91396 0.91489 1.25858 0.95708 0.95856 1.02423 1.70078 1.38660 1.24843 1.24113 0.85690 0.78918 0.78803 0.78783 1.19418 1.21580 1.19375 1.21312 0.97960 0.95478 0.83211 1.44790 1.56769 1.32790 1.01264 1.17470 0.92498 0.92333 0.85038 1.20601 1.05074 0.99133 0.97411 1.19978 0.99488 0.99366 0.87910 1.19686 1.06046 0.99407 0.85134 1.19538 0.97910 0.93652 0.86581 1.19382 1.09309 1.05488 0.86987 1.87288 1.83935 1.38401 1.14617 1.26012 0.90512 0.80866 0.93099 1.87293 1.52945 1.69473 1.14875 0.91804 0.93210 0.94134 0.94190 0.93206 0.91814 0.99108 0.99061 0.93156 0.92735 0.92658 0.75633 0.84157 0.83336 0.83880 0.88388 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.30 0.54 -52.18 -0.03 -2.33 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.44 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.52 -27.08 7.65 25.60 0.20 -26.89 16 6 H 0.07 3.34 5.68 -2.91 -0.02 3.33 16 7 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 8 N -0.94 -55.46 13.29 21.45 0.28 -55.17 16 9 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.14 4.39 3.80 86.38 0.33 4.72 16 14 N -0.73 -18.34 5.14 -339.30 -1.75 -20.09 16 15 C 0.23 5.90 6.65 38.14 0.25 6.16 16 16 C -0.20 -4.98 9.31 22.41 0.21 -4.77 16 17 C -0.05 -1.15 10.05 22.33 0.22 -0.93 16 18 C -0.06 -1.48 7.15 22.59 0.16 -1.32 16 19 C 0.07 1.77 7.15 22.58 0.16 1.93 16 20 C -0.19 -4.61 9.91 22.48 0.22 -4.39 16 21 O -0.33 -7.65 11.40 -76.09 -0.87 -8.51 16 22 C 0.21 3.43 8.89 113.37 1.01 4.44 16 23 O -0.33 -7.78 11.41 -77.64 -0.89 -8.66 16 24 H 0.06 1.66 6.86 -2.39 -0.02 1.65 16 25 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.80 6.62 -2.38 -0.02 1.79 16 29 H 0.06 1.68 6.86 -2.38 -0.02 1.66 16 30 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 34 H 0.06 1.72 7.95 -2.38 -0.02 1.70 16 35 H 0.41 9.17 6.18 -92.71 -0.57 8.60 16 36 H 0.14 3.38 6.72 -2.91 -0.02 3.36 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.55 323.50 3.77 -59.78 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.48 Total: 15.26 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 4.48 Total: -27.71 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.46 Total: -75.26 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.75 Total: -17.17 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -63.55 3.77 -59.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155552910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.284 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds