Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46819 * 2 1 4 4 C 1.52995 * 109.47231 * 240.00055 * 2 1 3 5 5 O 1.42896 * 109.47179 * 119.99848 * 2 1 3 6 6 C 1.42900 * 113.99983 * 59.99889 * 5 2 1 7 7 C 1.50695 * 109.47294 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99863 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00425 * 179.97438 * 7 6 5 10 10 C 1.39230 * 120.00519 * 184.29412 * 9 7 6 11 11 C 1.39479 * 119.83424 * 324.71232 * 10 9 7 12 12 C 1.36375 * 120.17040 * 180.29496 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48485 * 12 11 10 14 14 C 1.41157 * 120.16787 * 180.25291 * 13 12 11 15 15 H 1.07997 * 120.00057 * 215.01831 * 14 13 12 16 16 C 1.39907 * 119.99736 * 35.00954 * 14 13 12 17 17 N 1.30868 * 120.00224 * 355.54662 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 175.55178 * 16 14 13 19 19 H 1.48497 * 109.47411 * 89.99814 * 18 16 14 20 20 H 1.48499 * 109.46679 * 210.00225 * 18 16 14 21 21 H 1.48503 * 109.46788 * 329.99782 * 18 16 14 22 22 C 1.40869 * 119.66984 * 0.51204 * 13 12 11 23 23 C 1.36371 * 119.83090 * 359.73785 * 22 13 12 24 24 H 1.08998 * 109.47157 * 300.00301 * 1 2 3 25 25 H 1.09005 * 109.46726 * 60.00237 * 1 2 3 26 26 H 1.08995 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46792 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47019 * 300.00018 * 3 2 1 29 29 H 1.08999 * 109.47053 * 60.00195 * 3 2 1 30 30 H 1.08995 * 109.46941 * 299.99989 * 4 2 1 31 31 H 1.09006 * 109.47043 * 59.99920 * 4 2 1 32 32 H 1.09002 * 109.47330 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.46630 * 60.00137 * 6 5 2 34 34 H 1.08996 * 109.47147 * 300.00406 * 6 5 2 35 35 H 0.97004 * 119.99835 * 4.29901 * 9 7 6 36 36 H 1.08000 * 119.91449 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08737 * 179.70212 * 12 11 10 38 38 H 0.96996 * 120.00226 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.08685 * 179.71143 * 22 13 12 40 40 H 1.07996 * 119.92011 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1421 -2.6447 2.5251 8 8 2.8321 -1.9781 3.2671 9 7 1.8730 -3.9299 2.8286 10 6 2.3124 -4.4669 4.0357 11 6 3.5363 -4.0641 4.5698 12 6 3.9762 -4.5902 5.7486 13 6 3.1859 -5.5347 6.4326 14 6 3.6318 -6.0798 7.6559 15 1 3.4091 -7.1074 7.9022 16 6 4.3625 -5.2888 8.5492 17 7 4.7076 -4.0717 8.2141 18 14 4.8455 -5.9701 10.2201 19 1 6.1674 -6.6390 10.1187 20 1 4.9266 -4.8597 11.2027 21 1 3.8263 -6.9533 10.6672 22 6 1.9510 -5.9366 5.8869 23 6 1.5268 -5.4055 4.7046 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2492 31 1 1.6767 -0.2073 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.9493 -2.5915 0.4007 34 1 0.4959 -2.0777 1.2907 35 1 1.3732 -4.4808 2.2061 36 1 4.1392 -3.3369 4.0462 37 1 4.9263 -4.2808 6.1585 38 1 5.2138 -3.5232 8.8336 39 1 1.3419 -6.6638 6.4033 40 1 0.5804 -5.7129 4.2848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158097682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = -65.253195 kcal Electronic energy + Delta-G solvation = -20958.579646 eV Core-core repulsion = 17738.131713 eV Total energy + Delta-G solvation = -3220.447933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87518 -38.75671 -37.09336 -34.41123 -33.49403 -32.87549 -29.64682 -29.31160 -28.14746 -27.64989 -26.99414 -24.60027 -21.53754 -21.02223 -20.08142 -19.57966 -17.27379 -17.19827 -16.83096 -15.90533 -15.74476 -15.18854 -14.77158 -14.57233 -13.94288 -13.64975 -13.57442 -13.14593 -12.86621 -12.65118 -12.41547 -12.20546 -12.09080 -11.94636 -11.94274 -11.72022 -11.44489 -11.41618 -11.13645 -10.90925 -10.74835 -10.47595 -9.89653 -9.84554 -9.67445 -9.38426 -8.95576 -8.69472 -7.49837 -6.86571 -6.56335 -4.30558 2.59625 3.02375 3.08327 3.11841 3.12793 3.16952 3.40068 4.01118 4.15511 4.59965 4.62206 4.74700 4.79818 5.00339 5.15539 5.19577 5.26747 5.34072 5.48770 5.51620 5.62864 5.64897 5.69149 5.79762 6.04092 6.07054 6.14954 6.41054 6.81234 6.98060 7.06504 7.12332 7.24513 7.32216 7.66448 7.71176 8.00188 8.12111 8.22457 8.36339 8.69994 8.79906 8.96214 9.04255 10.34663 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.003261 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.734838 B = 8584.381419 C = 9050.342411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.348 6.348 6 C 0.042 3.958 7 C 0.497 3.503 8 O -0.506 6.506 9 N -0.653 5.653 10 C 0.006 3.994 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.204 4.204 23 C -0.113 4.113 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.394 0.606 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 4.930 -15.975 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.063 3.937 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.267 6.267 6 C -0.038 4.038 7 C 0.282 3.718 8 O -0.379 6.379 9 N -0.298 5.298 10 C -0.086 4.086 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.494 4.494 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.434 5.434 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.224 4.224 23 C -0.133 4.133 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.227 0.773 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.056 5.762 -15.210 17.356 hybrid contribution -0.393 -0.621 0.250 0.776 sum -6.449 5.141 -14.960 17.083 Atomic orbital electron populations 1.22457 0.95750 1.02551 1.02976 1.21581 0.93166 0.93520 0.85397 1.21734 1.02226 0.93031 1.02400 1.22454 1.02513 1.00915 0.97831 1.88137 1.73915 1.22025 1.42592 1.22219 0.99522 0.85186 0.96849 1.20198 0.82298 0.82060 0.87230 1.90740 1.36232 1.60779 1.50195 1.42845 1.56499 1.10631 1.19864 1.17263 0.97088 1.04576 0.89693 1.20663 0.93982 0.99324 0.97394 1.21308 1.01172 1.00555 0.93335 1.17729 0.89706 0.91095 0.91703 1.19474 1.29967 0.98811 1.01171 0.90651 1.25897 0.93634 0.94518 1.00617 1.69787 1.29559 1.07796 1.36231 0.86207 0.79508 0.79239 0.81048 1.19539 1.20309 1.18785 1.20687 0.97759 1.06195 0.97781 1.20065 0.97328 0.99754 0.96178 0.91465 0.91473 0.92182 0.91612 0.91196 0.91605 0.92181 0.91470 0.91482 0.90620 0.90513 0.77256 0.87450 0.85189 0.91056 0.88516 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 8.25 37.16 0.31 -1.25 16 2 C 0.10 1.07 1.14 -90.62 -0.10 0.97 16 3 C -0.14 -1.29 8.84 37.16 0.33 -0.97 16 4 C -0.18 -1.52 8.25 37.16 0.31 -1.22 16 5 O -0.35 -5.20 9.52 -55.14 -0.52 -5.72 16 6 C 0.04 0.56 5.62 36.00 0.20 0.76 16 7 C 0.50 9.21 7.74 -10.99 -0.09 9.12 16 8 O -0.51 -12.09 13.92 -14.36 -0.20 -12.29 16 9 N -0.65 -11.57 5.30 -9.74 -0.05 -11.62 16 10 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 11 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 12 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 13 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 14 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 15 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 17 N -0.81 -21.91 10.61 55.55 0.59 -21.32 16 18 Si 0.92 19.36 29.56 -169.99 -5.03 14.34 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 C -0.20 -4.98 9.74 -39.26 -0.38 -5.36 16 23 C -0.11 -2.49 9.90 -39.79 -0.39 -2.88 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.79 6.42 -51.93 -0.33 0.46 16 34 H 0.08 0.83 6.42 -51.93 -0.33 0.49 16 35 H 0.39 5.17 8.82 -40.82 -0.36 4.81 16 36 H 0.11 2.79 6.22 -52.49 -0.33 2.46 16 37 H 0.13 3.72 6.15 -52.49 -0.32 3.40 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -32.56 329.60 -8.01 -40.57 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.71 Total: 8.34 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.06 Total: -17.25 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.54 Total: -32.94 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.72 Total: -18.01 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.56 -8.01 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158097682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.686 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds