Wall clock time and date at job start Mon Mar 30 2020 02:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46819 * 2 1 4 4 C 1.52995 * 109.47231 * 240.00055 * 2 1 3 5 5 O 1.42896 * 109.47179 * 119.99848 * 2 1 3 6 6 C 1.42900 * 113.99983 * 59.99889 * 5 2 1 7 7 C 1.50695 * 109.47294 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99863 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00425 * 179.97438 * 7 6 5 10 10 C 1.39230 * 120.00519 * 184.29412 * 9 7 6 11 11 C 1.39479 * 119.83424 * 324.71232 * 10 9 7 12 12 C 1.36375 * 120.17040 * 180.29496 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48485 * 12 11 10 14 14 C 1.41157 * 120.16787 * 180.25291 * 13 12 11 15 15 H 1.07997 * 120.00057 * 215.01831 * 14 13 12 16 16 C 1.39907 * 119.99736 * 35.00954 * 14 13 12 17 17 N 1.30868 * 120.00224 * 355.54662 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 175.55178 * 16 14 13 19 19 H 1.48497 * 109.47411 * 89.99814 * 18 16 14 20 20 H 1.48499 * 109.46679 * 210.00225 * 18 16 14 21 21 H 1.48503 * 109.46788 * 329.99782 * 18 16 14 22 22 C 1.40869 * 119.66984 * 0.51204 * 13 12 11 23 23 C 1.36371 * 119.83090 * 359.73785 * 22 13 12 24 24 H 1.08998 * 109.47157 * 300.00301 * 1 2 3 25 25 H 1.09005 * 109.46726 * 60.00237 * 1 2 3 26 26 H 1.08995 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46792 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47019 * 300.00018 * 3 2 1 29 29 H 1.08999 * 109.47053 * 60.00195 * 3 2 1 30 30 H 1.08995 * 109.46941 * 299.99989 * 4 2 1 31 31 H 1.09006 * 109.47043 * 59.99920 * 4 2 1 32 32 H 1.09002 * 109.47330 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.46630 * 60.00137 * 6 5 2 34 34 H 1.08996 * 109.47147 * 300.00406 * 6 5 2 35 35 H 0.97004 * 119.99835 * 4.29901 * 9 7 6 36 36 H 1.08000 * 119.91449 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08737 * 179.70212 * 12 11 10 38 38 H 0.96996 * 120.00226 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.08685 * 179.71143 * 22 13 12 40 40 H 1.07996 * 119.92011 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1421 -2.6447 2.5251 8 8 2.8321 -1.9781 3.2671 9 7 1.8730 -3.9299 2.8286 10 6 2.3124 -4.4669 4.0357 11 6 3.5363 -4.0641 4.5698 12 6 3.9762 -4.5902 5.7486 13 6 3.1859 -5.5347 6.4326 14 6 3.6318 -6.0798 7.6559 15 1 3.4091 -7.1074 7.9022 16 6 4.3625 -5.2888 8.5492 17 7 4.7076 -4.0717 8.2141 18 14 4.8455 -5.9701 10.2201 19 1 6.1674 -6.6390 10.1187 20 1 4.9266 -4.8597 11.2027 21 1 3.8263 -6.9533 10.6672 22 6 1.9510 -5.9366 5.8869 23 6 1.5268 -5.4055 4.7046 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2492 31 1 1.6767 -0.2073 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 1.9493 -2.5915 0.4007 34 1 0.4959 -2.0777 1.2907 35 1 1.3732 -4.4808 2.2061 36 1 4.1392 -3.3369 4.0462 37 1 4.9263 -4.2808 6.1585 38 1 5.2138 -3.5232 8.8336 39 1 1.3419 -6.6638 6.4033 40 1 0.5804 -5.7129 4.2848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158097682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:10 Heat of formation + Delta-G solvation = -85.678452 kcal Electronic energy + Delta-G solvation = -20959.465351 eV Core-core repulsion = 17738.131713 eV Total energy + Delta-G solvation = -3221.333638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31568 -39.91495 -38.84760 -36.18087 -34.72507 -34.37409 -31.51329 -31.10657 -29.33089 -28.27280 -28.00695 -26.37760 -23.33249 -22.83479 -21.25599 -20.89885 -19.23378 -18.66169 -18.04691 -17.13755 -17.03384 -16.88971 -16.00654 -15.78871 -15.62001 -15.00546 -14.68387 -14.42594 -14.35458 -14.11452 -13.93386 -13.62265 -13.33557 -13.11462 -12.88885 -12.82928 -12.73569 -12.66695 -12.64658 -12.31264 -12.20178 -11.79193 -11.70481 -11.53426 -11.16819 -10.74040 -10.56081 -10.44878 -9.45945 -8.75837 -8.49621 -6.33314 0.79513 1.12720 1.38584 1.43816 1.53780 1.73407 1.95353 2.23751 2.81114 3.07189 3.66992 3.76139 3.91488 3.98739 4.09880 4.15095 4.27762 4.44143 4.48185 4.68153 4.68917 4.81302 4.82466 4.95173 4.95583 4.99127 5.12167 5.16361 5.17477 5.33909 5.34355 5.39148 5.41697 5.70849 5.85670 6.07465 6.14178 6.23848 6.36040 6.70677 6.72607 6.95764 7.02083 7.40146 8.43376 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.003261 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.734838 B = 8584.381419 C = 9050.342411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.390 6.390 6 C 0.054 3.946 7 C 0.491 3.509 8 O -0.568 6.568 9 N -0.639 5.639 10 C 0.019 3.981 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.066 3.934 14 C -0.496 4.496 15 H 0.081 0.919 16 C 0.021 3.979 17 N -0.848 5.848 18 Si 0.992 3.008 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.209 4.209 23 C -0.104 4.104 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.422 0.578 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.115 0.885 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 4.034 -17.924 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.054 3.946 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.310 6.310 6 C -0.025 4.025 7 C 0.279 3.721 8 O -0.446 6.446 9 N -0.287 5.287 10 C -0.074 4.074 11 C -0.131 4.131 12 C -0.189 4.189 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.476 5.476 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.229 4.229 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.260 0.740 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.581 4.840 -17.226 19.844 hybrid contribution 0.317 -0.256 0.666 0.781 sum -8.264 4.584 -16.560 19.067 Atomic orbital electron populations 1.22441 0.94084 1.03445 1.03463 1.21905 0.94531 0.93428 0.84753 1.21806 1.01448 0.93210 1.03150 1.22437 1.01721 1.01640 0.97605 1.88098 1.75034 1.22835 1.45060 1.22223 1.00932 0.84933 0.94438 1.21301 0.80827 0.81670 0.88273 1.90727 1.38998 1.62278 1.52624 1.42718 1.56152 1.11048 1.18752 1.17346 0.95607 1.03485 0.91008 1.20667 0.95666 0.99512 0.97268 1.21162 1.00913 1.02269 0.94604 1.18072 0.91200 0.91918 0.92454 1.19780 1.31601 0.99402 1.01900 0.90058 1.26885 0.93050 0.94518 1.04601 1.69921 1.30620 1.09308 1.37768 0.85056 0.79439 0.78596 0.75655 1.18665 1.19853 1.17761 1.20983 0.96883 1.06317 0.98710 1.20455 0.98671 0.98258 0.95024 0.92874 0.89146 0.91042 0.92945 0.88256 0.93016 0.91030 0.89159 0.92795 0.87146 0.87200 0.73970 0.88960 0.87943 0.90791 0.86689 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.25 71.98 0.59 -1.88 16 2 C 0.09 1.72 1.14 -10.79 -0.01 1.71 16 3 C -0.14 -2.49 8.84 71.98 0.64 -1.85 16 4 C -0.18 -2.44 8.25 71.98 0.59 -1.84 16 5 O -0.39 -11.21 9.52 -129.94 -1.24 -12.45 16 6 C 0.05 1.27 5.62 71.23 0.40 1.67 16 7 C 0.49 17.65 7.74 87.66 0.68 18.33 16 8 O -0.57 -27.94 13.92 16.00 0.22 -27.72 16 9 N -0.64 -21.15 5.30 -303.12 -1.61 -22.76 16 10 C 0.02 0.84 6.31 38.57 0.24 1.08 16 11 C -0.11 -5.90 8.61 22.13 0.19 -5.71 16 12 C -0.17 -9.80 8.61 22.48 0.19 -9.61 16 13 C 0.07 3.69 5.55 -21.28 -0.12 3.57 16 14 C -0.50 -27.59 9.02 23.39 0.21 -27.38 16 15 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 16 C 0.02 1.10 5.42 85.24 0.46 1.57 16 17 N -0.85 -48.44 10.61 21.82 0.23 -48.21 16 18 Si 0.99 40.44 29.56 68.60 2.03 42.47 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 22 C -0.21 -10.04 9.74 22.48 0.22 -9.82 16 23 C -0.10 -4.33 9.90 22.14 0.22 -4.11 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.07 0.82 6.54 -2.39 -0.02 0.81 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.81 6.54 -2.39 -0.02 0.79 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.85 6.42 -2.38 -0.02 1.84 16 34 H 0.11 1.88 6.42 -2.39 -0.02 1.87 16 35 H 0.42 9.28 8.82 -92.71 -0.82 8.47 16 36 H 0.09 5.11 6.22 -2.91 -0.02 5.09 16 37 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 38 H 0.28 14.78 8.30 -92.71 -0.77 14.01 16 39 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -76.73 329.60 4.38 -72.35 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.23 Total: 30.59 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.51 Total: -34.26 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.38 Total: -70.97 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.01 Total: -40.16 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -76.73 4.38 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158097682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.329 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds