Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 H 1.09004 * 109.46688 * 54.46385 * 3 2 1 5 5 C 1.50700 * 109.46898 * 174.46257 * 3 2 1 6 6 C 1.38227 * 120.00270 * 59.83643 * 5 3 2 7 7 C 1.38236 * 120.00096 * 179.81128 * 6 5 3 8 8 C 1.38234 * 119.99702 * 0.39220 * 7 6 5 9 9 C 1.38237 * 120.00271 * 359.85993 * 8 7 6 10 10 C 1.38233 * 119.99978 * 359.95565 * 9 8 7 11 11 N 1.46500 * 109.47032 * 294.46337 * 3 2 1 12 12 C 1.36936 * 119.99981 * 116.15335 * 11 3 2 13 13 H 1.07997 * 119.99908 * 209.33843 * 12 11 3 14 14 C 1.38809 * 119.99870 * 29.34032 * 12 11 3 15 15 N 1.31617 * 120.00394 * 19.79767 * 14 12 11 16 16 Si 1.86802 * 120.00041 * 199.79420 * 14 12 11 17 17 H 1.48506 * 109.47074 * 90.00344 * 16 14 12 18 18 H 1.48501 * 109.47200 * 210.00097 * 16 14 12 19 19 H 1.48499 * 109.47217 * 330.00352 * 16 14 12 20 20 C 1.46504 * 120.00038 * 296.42692 * 11 3 2 21 21 C 1.50697 * 109.46797 * 266.05349 * 20 11 3 22 22 O 1.20822 * 120.00556 * 354.36081 * 21 20 11 23 23 O 1.34234 * 119.99550 * 174.36617 * 21 20 11 24 24 C 1.45204 * 116.99996 * 180.02562 * 23 21 20 25 25 H 1.09009 * 109.47489 * 65.16524 * 1 2 3 26 26 H 1.09001 * 109.47333 * 185.16825 * 1 2 3 27 27 H 1.09000 * 109.47543 * 305.16823 * 1 2 3 28 28 H 1.09001 * 109.47171 * 240.00436 * 2 1 3 29 29 H 1.08990 * 109.47154 * 120.00062 * 2 1 3 30 30 H 1.08000 * 120.00019 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.99838 * 180.23370 * 7 6 5 32 32 H 1.08000 * 119.99890 * 179.83781 * 8 7 6 33 33 H 1.07997 * 119.99895 * 179.97438 * 9 8 7 34 34 H 1.07995 * 120.00144 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00864 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46811 * 26.04726 * 20 11 3 37 37 H 1.08993 * 109.46706 * 146.05170 * 20 11 3 38 38 H 1.09001 * 109.47000 * 59.99338 * 24 23 21 39 39 H 1.08993 * 109.47204 * 179.97438 * 24 23 21 40 40 H 1.09002 * 109.46793 * 299.99859 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9841 0.8363 5 6 3.5407 1.4447 0.1371 6 6 4.3223 0.8112 -0.8108 7 6 5.6991 0.8166 -0.6871 8 6 6.2939 1.4485 0.3889 9 6 5.5120 2.0775 1.3397 10 6 4.1354 2.0755 1.2139 11 7 1.6635 2.0936 -1.2572 12 6 0.8063 3.1614 -1.2454 13 1 0.1649 3.3484 -2.0939 14 6 0.7619 4.0036 -0.1428 15 7 1.7700 4.0344 0.7028 16 14 -0.7285 5.0933 0.1407 17 1 -1.7238 4.3654 0.9683 18 1 -0.3096 6.3315 0.8454 19 1 -1.3372 5.4494 -1.1662 20 6 2.1993 1.5985 -2.5277 21 6 3.4388 2.3765 -2.8873 22 8 3.7770 3.3199 -2.2125 23 8 4.1672 2.0213 -3.9574 24 6 5.3486 2.8154 -4.2437 25 1 -0.3634 0.4316 -0.9327 26 1 -0.3634 -1.0235 0.0926 27 1 -0.3634 0.5919 0.8401 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8574 0.3144 -1.6495 31 1 6.3099 0.3249 -1.4297 32 1 7.3694 1.4504 0.4870 33 1 5.9767 2.5708 2.1805 34 1 3.5246 2.5672 1.9565 35 1 1.7392 4.6231 1.4731 36 1 2.4492 0.5420 -2.4295 37 1 1.4516 1.7238 -3.3108 38 1 6.0319 2.7688 -3.3958 39 1 5.8443 2.4223 -5.1313 40 1 5.0567 3.8509 -4.4187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159678190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = -27.797507 kcal Electronic energy + Delta-G solvation = -23301.419788 eV Core-core repulsion = 20082.596056 eV Total energy + Delta-G solvation = -3218.823732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60775 -38.43983 -36.30251 -35.11864 -32.49712 -31.31180 -30.14864 -29.93926 -28.02915 -26.12667 -25.40562 -22.67781 -21.84400 -21.21721 -20.30740 -19.03133 -16.96209 -16.58787 -16.19283 -15.67131 -15.30430 -14.79350 -14.57760 -14.26352 -13.65802 -13.34131 -13.28293 -12.78537 -12.70141 -12.53343 -12.32541 -11.82140 -11.48387 -11.38695 -11.24717 -11.14072 -10.91945 -10.80394 -10.54441 -10.29511 -10.23579 -9.95340 -9.91925 -9.76094 -9.74505 -9.26647 -8.53354 -8.04682 -7.76072 -6.84351 -5.85528 -3.33547 2.21715 2.30355 3.32980 3.41955 3.42865 3.45911 3.66002 4.41719 4.67744 5.29268 5.39445 5.56029 5.59708 5.63706 5.66300 5.68761 5.81108 5.83527 5.94056 6.04066 6.07400 6.18681 6.25137 6.32208 6.41436 6.48863 6.58541 6.71941 6.80512 6.90401 6.94833 7.09397 7.26197 7.31699 7.35790 7.38970 7.71827 7.80181 7.94626 8.32497 8.95149 9.09467 9.68428 10.18974 11.18252 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.008665 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.088222 B = 3230.665549 C = 3645.978853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.212 3.788 4 H 0.118 0.882 5 C -0.040 4.040 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.142 4.142 9 C -0.132 4.132 10 C -0.074 4.074 11 N -0.537 5.537 12 C -0.265 4.265 13 H 0.071 0.929 14 C 0.019 3.981 15 N -0.871 5.871 16 Si 0.901 3.099 17 H -0.285 1.285 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.143 3.857 21 C 0.408 3.592 22 O -0.464 6.464 23 O -0.387 6.387 24 C 0.038 3.962 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -7.484 -2.774 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.106 3.894 4 H 0.136 0.864 5 C -0.042 4.042 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.151 4.151 10 C -0.093 4.093 11 N -0.253 5.253 12 C -0.394 4.394 13 H 0.089 0.911 14 C -0.183 4.183 15 N -0.512 5.512 16 Si 0.730 3.270 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.013 3.987 21 C 0.245 3.755 22 O -0.346 6.346 23 O -0.305 6.305 24 C -0.057 4.057 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.100 -7.029 -2.386 8.480 hybrid contribution -0.082 1.163 0.028 1.166 sum 4.018 -5.866 -2.358 7.491 Atomic orbital electron populations 1.21566 0.95731 0.98971 1.02868 1.22091 0.96481 0.98900 1.00041 1.19705 0.87787 0.90359 0.91532 0.86430 1.20475 0.97621 0.93263 0.92793 1.21205 0.93654 1.01072 0.99356 1.20848 0.94916 1.01194 0.98012 1.20822 0.98454 1.00762 0.95975 1.21037 0.94544 1.00408 0.99062 1.21074 0.93650 0.96186 0.98365 1.44144 1.47991 1.34346 0.98849 1.19113 1.11838 1.04568 1.03909 0.91133 1.25080 0.96831 0.96692 0.99649 1.70096 1.27608 1.38580 1.14871 0.86336 0.82706 0.79857 0.78073 1.21219 1.21834 1.20416 1.21160 0.89381 0.96291 0.91876 1.26836 0.85963 0.85517 0.77186 1.90700 1.67859 1.26957 1.49092 1.86626 1.37555 1.57520 1.48761 1.22939 0.86722 0.95580 1.00501 0.91763 0.94875 0.93201 0.93344 0.93130 0.87006 0.87842 0.87820 0.87558 0.85757 0.93613 0.90222 0.90036 0.92936 0.89826 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.74 37.16 0.36 -1.94 16 2 C -0.14 -2.45 5.13 -26.73 -0.14 -2.59 16 3 C 0.21 4.61 1.54 -69.08 -0.11 4.50 16 4 H 0.12 2.90 5.33 -51.93 -0.28 2.63 16 5 C -0.04 -0.86 4.19 -104.62 -0.44 -1.29 16 6 C -0.13 -2.66 6.15 -39.59 -0.24 -2.91 16 7 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 8 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 9 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 10 C -0.07 -1.60 9.12 -39.58 -0.36 -1.96 16 11 N -0.54 -12.29 1.51 -168.34 -0.26 -12.54 16 12 C -0.27 -6.77 9.41 -15.06 -0.14 -6.91 16 13 H 0.07 1.80 7.90 -52.49 -0.41 1.38 16 14 C 0.02 0.49 4.85 -17.43 -0.08 0.41 16 15 N -0.87 -23.53 10.12 55.49 0.56 -22.96 16 16 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.14 2.90 5.31 -5.19 -0.03 2.87 16 21 C 0.41 8.88 5.40 36.00 0.19 9.07 16 22 O -0.46 -12.10 14.99 -18.75 -0.28 -12.38 16 23 O -0.39 -7.29 10.57 -39.27 -0.41 -7.71 16 24 C 0.04 0.60 10.56 101.05 1.07 1.67 16 25 H 0.06 1.16 7.91 -51.92 -0.41 0.75 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.82 6.19 -51.93 -0.32 0.50 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 2.10 4.55 -52.49 -0.24 1.86 16 31 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 2.78 7.45 -52.49 -0.39 2.39 16 35 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.08 1.42 4.56 -51.93 -0.24 1.18 16 37 H 0.08 1.54 8.07 -51.93 -0.42 1.12 16 38 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -29.76 322.93 -7.31 -37.07 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.65 Total: 5.59 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.11 Total: -7.81 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.31 Total: -35.51 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.70 Total: -20.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.76 -7.31 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159678190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.274 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds