Wall clock time and date at job start Mon Mar 30 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 H 1.09004 * 109.46688 * 54.46385 * 3 2 1 5 5 C 1.50700 * 109.46898 * 174.46257 * 3 2 1 6 6 C 1.38227 * 120.00270 * 59.83643 * 5 3 2 7 7 C 1.38236 * 120.00096 * 179.81128 * 6 5 3 8 8 C 1.38234 * 119.99702 * 0.39220 * 7 6 5 9 9 C 1.38237 * 120.00271 * 359.85993 * 8 7 6 10 10 C 1.38233 * 119.99978 * 359.95565 * 9 8 7 11 11 N 1.46500 * 109.47032 * 294.46337 * 3 2 1 12 12 C 1.36936 * 119.99981 * 116.15335 * 11 3 2 13 13 H 1.07997 * 119.99908 * 209.33843 * 12 11 3 14 14 C 1.38809 * 119.99870 * 29.34032 * 12 11 3 15 15 N 1.31617 * 120.00394 * 19.79767 * 14 12 11 16 16 Si 1.86802 * 120.00041 * 199.79420 * 14 12 11 17 17 H 1.48506 * 109.47074 * 90.00344 * 16 14 12 18 18 H 1.48501 * 109.47200 * 210.00097 * 16 14 12 19 19 H 1.48499 * 109.47217 * 330.00352 * 16 14 12 20 20 C 1.46504 * 120.00038 * 296.42692 * 11 3 2 21 21 C 1.50697 * 109.46797 * 266.05349 * 20 11 3 22 22 O 1.20822 * 120.00556 * 354.36081 * 21 20 11 23 23 O 1.34234 * 119.99550 * 174.36617 * 21 20 11 24 24 C 1.45204 * 116.99996 * 180.02562 * 23 21 20 25 25 H 1.09009 * 109.47489 * 65.16524 * 1 2 3 26 26 H 1.09001 * 109.47333 * 185.16825 * 1 2 3 27 27 H 1.09000 * 109.47543 * 305.16823 * 1 2 3 28 28 H 1.09001 * 109.47171 * 240.00436 * 2 1 3 29 29 H 1.08990 * 109.47154 * 120.00062 * 2 1 3 30 30 H 1.08000 * 120.00019 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.99838 * 180.23370 * 7 6 5 32 32 H 1.08000 * 119.99890 * 179.83781 * 8 7 6 33 33 H 1.07997 * 119.99895 * 179.97438 * 9 8 7 34 34 H 1.07995 * 120.00144 * 180.02562 * 10 9 8 35 35 H 0.97001 * 120.00864 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46811 * 26.04726 * 20 11 3 37 37 H 1.08993 * 109.46706 * 146.05170 * 20 11 3 38 38 H 1.09001 * 109.47000 * 59.99338 * 24 23 21 39 39 H 1.08993 * 109.47204 * 179.97438 * 24 23 21 40 40 H 1.09002 * 109.46793 * 299.99859 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9841 0.8363 5 6 3.5407 1.4447 0.1371 6 6 4.3223 0.8112 -0.8108 7 6 5.6991 0.8166 -0.6871 8 6 6.2939 1.4485 0.3889 9 6 5.5120 2.0775 1.3397 10 6 4.1354 2.0755 1.2139 11 7 1.6635 2.0936 -1.2572 12 6 0.8063 3.1614 -1.2454 13 1 0.1649 3.3484 -2.0939 14 6 0.7619 4.0036 -0.1428 15 7 1.7700 4.0344 0.7028 16 14 -0.7285 5.0933 0.1407 17 1 -1.7238 4.3654 0.9683 18 1 -0.3096 6.3315 0.8454 19 1 -1.3372 5.4494 -1.1662 20 6 2.1993 1.5985 -2.5277 21 6 3.4388 2.3765 -2.8873 22 8 3.7770 3.3199 -2.2125 23 8 4.1672 2.0213 -3.9574 24 6 5.3486 2.8154 -4.2437 25 1 -0.3634 0.4316 -0.9327 26 1 -0.3634 -1.0235 0.0926 27 1 -0.3634 0.5919 0.8401 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8574 0.3144 -1.6495 31 1 6.3099 0.3249 -1.4297 32 1 7.3694 1.4504 0.4870 33 1 5.9767 2.5708 2.1805 34 1 3.5246 2.5672 1.9565 35 1 1.7392 4.6231 1.4731 36 1 2.4492 0.5420 -2.4295 37 1 1.4516 1.7238 -3.3108 38 1 6.0319 2.7688 -3.3958 39 1 5.8443 2.4223 -5.1313 40 1 5.0567 3.8509 -4.4187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159678190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:30 Heat of formation + Delta-G solvation = -42.501201 kcal Electronic energy + Delta-G solvation = -23302.057388 eV Core-core repulsion = 20082.596056 eV Total energy + Delta-G solvation = -3219.461332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24778 -39.99138 -37.90307 -36.80306 -34.23829 -33.03494 -31.62720 -31.46695 -29.61055 -27.61688 -27.06315 -24.40237 -23.35408 -22.69526 -21.90260 -20.68797 -18.74494 -18.24004 -17.71420 -17.28296 -16.86876 -16.50808 -16.19364 -15.92561 -15.18112 -15.01609 -14.78452 -14.29085 -14.23097 -14.00467 -13.90497 -13.36244 -13.19489 -12.86772 -12.83570 -12.70372 -12.60579 -12.45299 -12.23771 -12.10040 -11.73664 -11.55921 -11.47972 -11.41754 -11.32348 -11.00586 -10.42291 -9.55706 -9.28363 -8.66930 -7.79385 -5.28727 0.70894 0.79619 1.46973 1.49947 1.56005 1.77125 2.14366 2.53826 3.13088 3.37077 3.69979 4.08681 4.15814 4.27835 4.35198 4.37150 4.39435 4.44877 4.51546 4.58003 4.65049 4.73201 4.77048 4.82871 4.91180 5.00553 5.17838 5.22755 5.35296 5.40311 5.46004 5.64687 5.67835 5.74706 5.77830 5.78489 5.82884 6.21996 6.40462 6.45604 7.15507 7.33469 7.84638 8.30902 9.21080 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.008665 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.088222 B = 3230.665549 C = 3645.978853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.212 3.788 4 H 0.081 0.919 5 C -0.056 4.056 6 C -0.141 4.141 7 C -0.132 4.132 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.103 4.103 11 N -0.546 5.546 12 C -0.266 4.266 13 H 0.067 0.933 14 C -0.027 4.027 15 N -0.892 5.892 16 Si 0.951 3.049 17 H -0.281 1.281 18 H -0.305 1.305 19 H -0.275 1.275 20 C 0.139 3.861 21 C 0.416 3.584 22 O -0.514 6.514 23 O -0.379 6.379 24 C 0.034 3.966 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.130 0.870 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -9.282 -4.473 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.107 3.893 4 H 0.099 0.901 5 C -0.057 4.057 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.158 4.158 10 C -0.122 4.122 11 N -0.264 5.264 12 C -0.397 4.397 13 H 0.085 0.915 14 C -0.226 4.226 15 N -0.534 5.534 16 Si 0.781 3.219 17 H -0.208 1.208 18 H -0.232 1.232 19 H -0.200 1.200 20 C 0.010 3.990 21 C 0.256 3.744 22 O -0.399 6.399 23 O -0.296 6.296 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.148 0.852 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.172 -8.863 -4.117 11.056 hybrid contribution -0.313 1.686 0.459 1.775 sum 4.858 -7.177 -3.658 9.407 Atomic orbital electron populations 1.21499 0.95136 1.00406 1.01428 1.21989 0.96903 0.96584 1.01184 1.19605 0.88161 0.91668 0.89911 0.90146 1.20511 0.97641 0.94136 0.93448 1.21309 0.94394 1.01103 0.99101 1.21245 0.94665 1.00552 0.98540 1.21211 1.00108 0.99479 0.95114 1.21302 0.93786 1.00531 1.00195 1.21073 0.94790 0.97550 0.98776 1.44147 1.48373 1.33776 1.00069 1.19277 1.12201 1.04706 1.03473 0.91494 1.25637 0.98627 0.98225 1.00072 1.70265 1.28850 1.39284 1.15049 0.85534 0.80584 0.78029 0.77749 1.20797 1.23230 1.19977 1.21314 0.89311 0.97355 0.91068 1.26859 0.86115 0.84506 0.76945 1.90699 1.69244 1.29111 1.50869 1.86580 1.38299 1.57513 1.47228 1.23226 0.85421 0.95243 1.02129 0.92872 0.91804 0.95058 0.91652 0.92299 0.86027 0.84801 0.84459 0.85802 0.88149 0.94644 0.87364 0.88548 0.93688 0.85164 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.74 71.98 0.70 -3.54 16 2 C -0.13 -4.46 5.13 30.59 0.16 -4.31 16 3 C 0.21 9.32 1.54 44.25 0.07 9.39 16 4 H 0.08 4.16 5.33 -2.39 -0.01 4.15 16 5 C -0.06 -2.40 4.19 -19.87 -0.08 -2.48 16 6 C -0.14 -5.33 6.15 22.27 0.14 -5.19 16 7 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 8 C -0.14 -4.75 10.05 22.27 0.22 -4.53 16 9 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 10 C -0.10 -4.57 9.12 22.27 0.20 -4.37 16 11 N -0.55 -24.99 1.51 -686.51 -1.04 -26.03 16 12 C -0.27 -13.79 9.41 84.03 0.79 -13.00 16 13 H 0.07 3.43 7.90 -2.91 -0.02 3.41 16 14 C -0.03 -1.45 4.85 84.86 0.41 -1.03 16 15 N -0.89 -50.37 10.12 21.65 0.22 -50.15 16 16 Si 0.95 44.22 29.60 68.60 2.03 46.25 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.14 5.40 5.31 85.63 0.45 5.86 16 21 C 0.42 17.51 5.40 71.24 0.38 17.89 16 22 O -0.51 -26.71 14.99 21.98 0.33 -26.38 16 23 O -0.38 -13.26 10.57 -51.45 -0.54 -13.80 16 24 C 0.03 0.99 10.56 113.37 1.20 2.19 16 25 H 0.05 1.87 7.91 -2.38 -0.02 1.85 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 2.05 6.19 -2.39 -0.01 2.03 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.12 4.23 4.55 -2.91 -0.01 4.22 16 31 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.10 4.82 7.45 -2.91 -0.02 4.79 16 35 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.11 3.54 4.56 -2.39 -0.01 3.53 16 37 H 0.10 3.44 8.07 -2.39 -0.02 3.42 16 38 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 39 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.04 1.29 8.13 -2.39 -0.02 1.27 16 Total: -1.00 -65.85 322.93 7.12 -58.74 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.03 Total: 23.86 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.09 Total: -12.49 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -0.82 Total: -76.18 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.21 Total: -40.18 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.85 7.12 -58.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159678190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.235 kcal (2) G-P(sol) polarization free energy of solvation -65.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds