Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 H 1.08996 * 109.47288 * 305.91057 * 3 2 1 5 5 C 1.50697 * 109.47385 * 185.91024 * 3 2 1 6 6 C 1.38238 * 119.99904 * 285.34161 * 5 3 2 7 7 C 1.38235 * 120.00013 * 179.78581 * 6 5 3 8 8 C 1.38233 * 120.00143 * 0.43454 * 7 6 5 9 9 C 1.38246 * 119.99666 * 359.81598 * 8 7 6 10 10 C 1.38230 * 119.99844 * 359.97438 * 9 8 7 11 11 N 1.46505 * 109.47196 * 65.90839 * 3 2 1 12 12 C 1.36938 * 119.99743 * 7.28021 * 11 3 2 13 13 H 1.07995 * 120.00189 * 13.58700 * 12 11 3 14 14 C 1.38816 * 119.99697 * 193.58282 * 12 11 3 15 15 N 1.31618 * 119.99963 * 17.95915 * 14 12 11 16 16 Si 1.86792 * 119.99835 * 197.95204 * 14 12 11 17 17 H 1.48496 * 109.47307 * 60.00526 * 16 14 12 18 18 H 1.48510 * 109.47029 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47433 * 300.00120 * 16 14 12 20 20 C 1.46504 * 120.00066 * 187.27682 * 11 3 2 21 21 C 1.50699 * 109.47036 * 91.94655 * 20 11 3 22 22 O 1.20824 * 119.99758 * 354.50655 * 21 20 11 23 23 O 1.34220 * 119.99723 * 174.51099 * 21 20 11 24 24 C 1.45211 * 116.99745 * 179.97438 * 23 21 20 25 25 H 1.08998 * 109.46950 * 305.78800 * 1 2 3 26 26 H 1.09003 * 109.46610 * 65.78507 * 1 2 3 27 27 H 1.08997 * 109.47073 * 185.78889 * 1 2 3 28 28 H 1.08997 * 109.46914 * 240.00043 * 2 1 3 29 29 H 1.09003 * 109.46958 * 119.99805 * 2 1 3 30 30 H 1.08006 * 120.00108 * 359.97438 * 6 5 3 31 31 H 1.08000 * 120.00086 * 180.27241 * 7 6 5 32 32 H 1.07993 * 120.00422 * 179.83189 * 8 7 6 33 33 H 1.07996 * 119.99590 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.99580 * 179.97438 * 10 9 8 35 35 H 0.96997 * 119.99824 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46919 * 331.94649 * 20 11 3 37 37 H 1.08997 * 109.46836 * 211.94918 * 20 11 3 38 38 H 1.08998 * 109.46697 * 180.02562 * 24 23 21 39 39 H 1.09000 * 109.46818 * 299.99823 * 24 23 21 40 40 H 1.09001 * 109.46902 * 60.00354 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9859 -0.8323 5 6 3.5399 1.4451 -0.1463 6 6 4.3394 1.0901 0.9241 7 6 5.7151 1.0882 0.7886 8 6 6.2916 1.4499 -0.4145 9 6 5.4922 1.8099 -1.4834 10 6 4.1164 1.8076 -1.3492 11 7 1.6712 2.0908 1.2609 12 6 1.1076 1.3558 2.2695 13 1 1.1335 0.2768 2.2308 14 6 0.5031 1.9976 3.3417 15 7 0.1528 3.2621 3.2393 16 14 0.1867 1.0664 4.9298 17 1 1.4757 0.5798 5.4836 18 1 -0.4649 1.9699 5.9120 19 1 -0.7030 -0.0907 4.6564 20 6 1.9055 3.5255 1.4428 21 6 0.6754 4.2917 1.0295 22 8 -0.2597 3.7103 0.5320 23 8 0.6187 5.6200 1.2138 24 6 -0.5969 6.2928 0.7915 25 1 -0.3633 0.6010 0.8336 26 1 -0.3633 0.4215 -0.9373 27 1 -0.3633 -1.0224 0.1037 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8891 0.8113 1.8654 31 1 6.3395 0.8066 1.6236 32 1 7.3664 1.4511 -0.5196 33 1 5.9426 2.0929 -2.4233 34 1 3.4920 2.0893 -2.1841 35 1 -0.2700 3.7105 3.9884 36 1 2.7506 3.8364 0.8287 37 1 2.1244 3.7278 2.4913 38 1 -0.5113 7.3600 0.9961 39 1 -0.7446 6.1389 -0.2774 40 1 -1.4468 5.8846 1.3384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159678320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = -30.756812 kcal Electronic energy + Delta-G solvation = -22731.455217 eV Core-core repulsion = 19512.503160 eV Total energy + Delta-G solvation = -3218.952057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.21292 -38.61153 -36.50120 -34.70274 -32.85581 -30.86421 -30.45478 -30.06296 -27.71261 -25.83896 -25.69407 -22.61937 -22.11465 -21.48164 -19.86014 -19.40345 -16.70968 -16.37886 -16.12016 -15.70340 -15.05256 -14.82898 -14.68543 -14.30589 -13.81668 -13.40885 -13.20493 -12.89930 -12.51173 -12.40205 -12.23498 -11.87582 -11.73433 -11.29909 -11.21724 -11.01608 -10.91654 -10.69916 -10.52696 -10.36411 -10.30077 -10.04073 -9.87941 -9.61071 -9.48017 -9.03040 -8.50692 -8.45485 -8.17502 -7.04434 -5.91399 -3.22753 1.82749 1.88721 3.35155 3.41429 3.41823 3.99146 4.16778 4.27530 4.50860 5.17282 5.27240 5.35415 5.40708 5.45246 5.65444 5.87864 5.88159 5.93882 5.99349 6.01066 6.08853 6.18849 6.22994 6.40515 6.41470 6.54020 6.60492 6.62870 6.72584 6.79627 6.91360 6.98754 7.01321 7.10686 7.32684 7.50809 7.51894 7.69653 7.91861 8.18333 9.04452 9.52244 9.73192 10.14618 11.20014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.007923 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.622757 B = 3533.090331 C = 4378.797727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C 0.207 3.793 4 H 0.044 0.956 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.129 4.129 8 C -0.135 4.135 9 C -0.130 4.130 10 C -0.122 4.122 11 N -0.559 5.559 12 C -0.245 4.245 13 H 0.090 0.910 14 C -0.002 4.002 15 N -0.908 5.908 16 Si 0.911 3.089 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.284 1.284 20 C 0.198 3.802 21 C 0.477 3.523 22 O -0.518 6.518 23 O -0.382 6.382 24 C 0.045 3.955 25 H 0.098 0.902 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.259 0.741 36 H 0.047 0.953 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -0.500 -5.863 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C 0.100 3.900 4 H 0.062 0.938 5 C -0.085 4.085 6 C -0.106 4.106 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.141 4.141 11 N -0.279 5.279 12 C -0.374 4.374 13 H 0.107 0.893 14 C -0.198 4.198 15 N -0.555 5.555 16 Si 0.741 3.259 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.211 1.211 20 C 0.069 3.931 21 C 0.318 3.682 22 O -0.404 6.404 23 O -0.299 6.299 24 C -0.050 4.050 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.882 -0.601 -5.876 9.069 hybrid contribution -0.651 -0.191 0.779 1.032 sum 6.232 -0.792 -5.098 8.090 Atomic orbital electron populations 1.21923 0.95182 1.00383 1.03536 1.21516 0.96793 0.95230 1.00609 1.19390 0.87346 0.93750 0.89490 0.93798 1.21001 0.98285 0.96322 0.92922 1.21186 0.92603 0.97457 0.99319 1.21147 0.95325 1.01034 0.97220 1.20991 0.98996 1.01518 0.93834 1.20984 0.93861 1.01513 0.98417 1.21048 0.94623 1.00915 0.97508 1.43978 1.69667 1.02601 1.11644 1.19343 1.30348 0.91237 0.96434 0.89293 1.24781 0.99088 0.96300 0.99676 1.69445 1.44421 1.10896 1.30744 0.86209 0.77826 0.78686 0.83145 1.21052 1.21781 1.21077 1.20195 0.88860 0.82192 1.01874 1.25205 0.91896 0.78577 0.72529 1.90432 1.38533 1.68627 1.42799 1.86528 1.39894 1.25298 1.78224 1.22792 0.87618 0.95742 0.98828 0.88310 0.94488 0.94787 0.93558 0.91273 0.85025 0.86847 0.87130 0.87023 0.86834 0.93024 0.93469 0.87565 0.90450 0.93932 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.40 37.16 0.35 -2.68 16 2 C -0.10 -1.94 4.82 -26.73 -0.13 -2.06 16 3 C 0.21 4.13 2.57 -69.08 -0.18 3.96 16 4 H 0.04 0.94 7.95 -51.93 -0.41 0.53 16 5 C -0.08 -1.47 4.25 -104.63 -0.45 -1.92 16 6 C -0.09 -1.51 9.28 -39.58 -0.37 -1.88 16 7 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 8 C -0.14 -1.86 10.05 -39.58 -0.40 -2.25 16 9 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 10 C -0.12 -1.93 9.67 -39.59 -0.38 -2.31 16 11 N -0.56 -12.75 1.52 -168.34 -0.26 -13.01 16 12 C -0.25 -6.00 6.70 -15.06 -0.10 -6.10 16 13 H 0.09 2.12 5.27 -52.49 -0.28 1.84 16 14 C 0.00 -0.04 5.02 -17.43 -0.09 -0.13 16 15 N -0.91 -24.74 8.51 55.49 0.47 -24.27 16 16 Si 0.91 20.95 29.59 -169.99 -5.03 15.92 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.20 4.60 5.45 -5.19 -0.03 4.57 16 21 C 0.48 11.77 5.59 36.01 0.20 11.97 16 22 O -0.52 -14.16 15.87 -18.75 -0.30 -14.46 16 23 O -0.38 -8.60 10.57 -39.23 -0.41 -9.02 16 24 C 0.05 0.84 10.56 101.05 1.07 1.91 16 25 H 0.10 2.36 5.64 -51.93 -0.29 2.06 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.31 6.51 -51.93 -0.34 0.97 16 30 H 0.13 2.45 7.73 -52.48 -0.41 2.04 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.11 1.65 8.00 -52.49 -0.42 1.23 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.05 1.00 7.58 -51.93 -0.39 0.61 16 37 H 0.11 2.64 6.59 -51.93 -0.34 2.30 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -28.89 327.40 -7.71 -36.60 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.82 Total: 4.76 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.29 Total: -1.46 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.22 Total: -37.28 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.71 Total: -23.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.89 -7.71 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159678320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.841 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds