Wall clock time and date at job start Mon Mar 30 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00063 * 2 1 4 4 C 1.53008 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46901 * 59.99867 * 4 3 2 6 6 C 1.52996 * 109.47059 * 299.99999 * 4 3 2 7 7 C 1.50701 * 109.46923 * 179.97438 * 4 3 2 8 8 O 1.21280 * 120.00119 * 359.97438 * 7 4 3 9 9 N 1.34769 * 120.00134 * 180.02562 * 7 4 3 10 10 C 1.39235 * 120.00424 * 185.18280 * 9 7 4 11 11 C 1.39476 * 119.83149 * 324.06182 * 10 9 7 12 12 C 1.36381 * 120.16972 * 180.29667 * 11 10 9 13 13 C 1.40865 * 119.82343 * 359.47505 * 12 11 10 14 14 C 1.41154 * 120.16398 * 180.24784 * 13 12 11 15 15 H 1.07997 * 120.00267 * 205.02540 * 14 13 12 16 16 C 1.39905 * 119.99655 * 25.03195 * 14 13 12 17 17 N 1.30873 * 120.00457 * 17.77034 * 16 14 13 18 18 Si 1.86802 * 120.00246 * 197.77236 * 16 14 13 19 19 H 1.48501 * 109.47530 * 94.97806 * 18 16 14 20 20 H 1.48501 * 109.47336 * 214.98321 * 18 16 14 21 21 H 1.48505 * 109.46876 * 334.97995 * 18 16 14 22 22 C 1.40869 * 119.67447 * 0.52270 * 13 12 11 23 23 C 1.36368 * 119.82974 * 359.72568 * 22 13 12 24 24 H 1.08991 * 109.47306 * 59.99866 * 1 2 3 25 25 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46884 * 299.99671 * 1 2 3 27 27 H 1.09000 * 109.47217 * 60.00313 * 3 2 1 28 28 H 1.09001 * 109.46805 * 300.00377 * 3 2 1 29 29 H 1.09005 * 109.46916 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47502 * 300.00278 * 5 4 3 31 31 H 1.09002 * 109.47115 * 60.00285 * 5 4 3 32 32 H 1.09000 * 109.47097 * 299.99971 * 6 4 3 33 33 H 1.08997 * 109.47344 * 59.99888 * 6 4 3 34 34 H 1.08997 * 109.46961 * 180.02562 * 6 4 3 35 35 H 0.97001 * 120.00052 * 5.17693 * 9 7 4 36 36 H 1.08000 * 119.91698 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.08781 * 179.69329 * 12 11 10 38 38 H 0.96998 * 120.00445 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.08422 * 179.71226 * 22 13 12 40 40 H 1.07999 * 119.91913 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9875 0.4251 1.2482 7 6 4.1485 2.5613 -0.0013 8 8 3.4357 3.5425 -0.0017 9 7 5.4888 2.7022 -0.0024 10 6 6.0558 3.9693 0.1059 11 6 5.4363 5.0609 -0.5024 12 6 5.9889 6.3040 -0.4057 13 6 7.1825 6.4856 0.3200 14 6 7.7578 7.7700 0.4290 15 1 8.8177 7.8735 0.6089 16 6 6.9550 8.9089 0.3041 17 7 5.6564 8.8119 0.4349 18 14 7.7365 10.5684 -0.0494 19 1 7.7134 10.8251 -1.5119 20 1 6.9757 11.6334 0.6522 21 1 9.1418 10.5660 0.4306 22 6 7.8022 5.3782 0.9316 23 6 7.2405 4.1405 0.8219 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 5.0731 0.3398 -1.2509 30 1 3.5430 -0.5702 -1.2502 31 1 3.6645 0.9666 -2.1400 32 1 3.6662 0.9659 2.1384 33 1 3.5441 -0.5706 1.2483 34 1 5.0741 0.3394 1.2480 35 1 6.0586 1.9209 -0.0787 36 1 4.5191 4.9207 -1.0550 37 1 5.5108 7.1475 -0.8814 38 1 5.0998 9.6015 0.3479 39 1 8.7200 5.5092 1.4857 40 1 7.7147 3.2904 1.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159737524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:14 Heat of formation + Delta-G solvation = -71.650537 kcal Electronic energy + Delta-G solvation = -21329.438022 eV Core-core repulsion = 18108.712680 eV Total energy + Delta-G solvation = -3220.725342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16746 -38.14678 -37.15174 -34.74390 -34.45084 -32.82611 -29.48958 -28.97398 -27.46954 -27.35222 -25.61378 -25.12391 -22.62760 -21.27492 -20.45396 -18.81852 -17.33086 -17.16512 -16.48962 -15.92730 -15.56943 -15.23053 -15.07256 -14.62003 -14.01385 -13.82671 -13.40044 -13.37253 -12.87280 -12.69273 -12.25996 -12.17451 -11.95976 -11.88735 -11.82303 -11.54692 -11.47244 -11.14767 -11.07166 -10.92097 -10.73749 -10.49799 -9.92225 -9.83481 -9.71644 -9.40448 -9.01951 -8.63968 -7.51526 -7.01738 -6.73807 -4.28959 2.59323 2.99980 3.07918 3.11631 3.12119 3.28990 3.44578 3.93599 4.08034 4.63508 4.67939 4.83470 4.91281 5.18795 5.22269 5.29622 5.50488 5.57508 5.58806 5.64264 5.71256 5.79918 5.81740 5.90825 6.15744 6.18098 6.20588 6.41740 6.82295 7.00528 7.04896 7.06339 7.16657 7.30447 7.61001 7.68825 7.97831 8.06475 8.22099 8.32815 8.63805 8.78369 8.89059 9.01852 10.19260 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.003645 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.600963 B = 7679.060618 C = 8213.887532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.086 3.914 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.531 6.531 9 N -0.646 5.646 10 C -0.010 4.010 11 C -0.085 4.085 12 C -0.158 4.158 13 C 0.107 3.893 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.788 5.788 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.102 4.102 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 -14.178 -1.580 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.009 3.991 4 C -0.082 4.082 5 C -0.193 4.193 6 C -0.192 4.192 7 C 0.296 3.704 8 O -0.407 6.407 9 N -0.288 5.288 10 C -0.102 4.102 11 C -0.105 4.105 12 C -0.178 4.178 13 C 0.104 3.896 14 C -0.489 4.489 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.236 4.236 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.696 -13.499 -1.548 14.733 hybrid contribution 0.298 0.685 -0.046 0.748 sum -5.398 -12.815 -1.593 13.996 Atomic orbital electron populations 1.22701 0.81094 1.02378 1.00152 1.87774 1.19506 1.28116 1.95532 1.22232 0.91376 0.83808 1.01699 1.20694 0.94911 0.93909 0.98690 1.21792 1.01165 1.00792 0.95589 1.21772 1.01206 1.00635 0.95594 1.20219 0.82804 0.90129 0.77253 1.90703 1.60881 1.40075 1.49072 1.42881 1.05876 1.08393 1.71680 1.17192 0.98746 0.83958 1.10324 1.20542 0.98648 0.92465 0.98807 1.20991 0.98797 0.95436 1.02600 1.17672 0.91278 0.92438 0.88199 1.19565 0.95927 0.90197 1.43204 0.90355 1.25944 0.94572 1.01515 0.92364 1.69865 1.05326 1.31985 1.34070 0.86299 0.80296 0.80706 0.79408 1.19333 1.20294 1.18570 1.20543 1.02961 0.92840 1.07306 1.20058 0.96109 0.96778 0.99313 0.94110 0.89789 0.94096 0.92365 0.92422 0.92195 0.90766 0.92248 0.92238 0.90822 0.92167 0.77229 0.87647 0.86342 0.90790 0.88656 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.68 9.35 -35.23 -0.33 -5.01 16 3 C 0.09 1.16 4.09 37.16 0.15 1.31 16 4 C -0.08 -1.06 0.71 -155.66 -0.11 -1.17 16 5 C -0.14 -1.53 8.22 37.16 0.31 -1.22 16 6 C -0.13 -1.56 8.23 37.16 0.31 -1.26 16 7 C 0.51 9.17 6.32 -10.99 -0.07 9.10 16 8 O -0.53 -11.86 13.42 5.56 0.07 -11.78 16 9 N -0.65 -11.52 5.08 -9.74 -0.05 -11.57 16 10 C -0.01 -0.23 6.30 -83.57 -0.53 -0.75 16 11 C -0.08 -2.13 8.61 -39.79 -0.34 -2.48 16 12 C -0.16 -4.28 8.63 -39.26 -0.34 -4.61 16 13 C 0.11 2.88 5.57 -106.80 -0.59 2.28 16 14 C -0.46 -12.24 9.03 -37.85 -0.34 -12.59 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 17 N -0.79 -20.89 10.98 55.55 0.61 -20.28 16 18 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.22 -5.28 9.74 -39.26 -0.38 -5.66 16 23 C -0.10 -2.26 9.90 -39.79 -0.39 -2.66 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 30 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 34 H 0.06 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.39 5.56 7.68 -40.82 -0.31 5.25 16 36 H 0.11 2.67 6.24 -52.49 -0.33 2.35 16 37 H 0.12 3.32 6.19 -52.49 -0.32 2.99 16 38 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -30.44 331.09 -6.95 -37.39 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.90 Total: 8.98 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.31 Total: -16.48 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.56 Total: -31.85 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.26 Total: -16.79 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.44 -6.95 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159737524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.263 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds