Wall clock time and date at job start Mon Mar 30 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00063 * 2 1 4 4 C 1.53008 * 109.47007 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46901 * 59.99867 * 4 3 2 6 6 C 1.52996 * 109.47059 * 299.99999 * 4 3 2 7 7 C 1.50701 * 109.46923 * 179.97438 * 4 3 2 8 8 O 1.21280 * 120.00119 * 359.97438 * 7 4 3 9 9 N 1.34769 * 120.00134 * 180.02562 * 7 4 3 10 10 C 1.39235 * 120.00424 * 185.18280 * 9 7 4 11 11 C 1.39476 * 119.83149 * 324.06182 * 10 9 7 12 12 C 1.36381 * 120.16972 * 180.29667 * 11 10 9 13 13 C 1.40865 * 119.82343 * 359.47505 * 12 11 10 14 14 C 1.41154 * 120.16398 * 180.24784 * 13 12 11 15 15 H 1.07997 * 120.00267 * 205.02540 * 14 13 12 16 16 C 1.39905 * 119.99655 * 25.03195 * 14 13 12 17 17 N 1.30873 * 120.00457 * 17.77034 * 16 14 13 18 18 Si 1.86802 * 120.00246 * 197.77236 * 16 14 13 19 19 H 1.48501 * 109.47530 * 94.97806 * 18 16 14 20 20 H 1.48501 * 109.47336 * 214.98321 * 18 16 14 21 21 H 1.48505 * 109.46876 * 334.97995 * 18 16 14 22 22 C 1.40869 * 119.67447 * 0.52270 * 13 12 11 23 23 C 1.36368 * 119.82974 * 359.72568 * 22 13 12 24 24 H 1.08991 * 109.47306 * 59.99866 * 1 2 3 25 25 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46884 * 299.99671 * 1 2 3 27 27 H 1.09000 * 109.47217 * 60.00313 * 3 2 1 28 28 H 1.09001 * 109.46805 * 300.00377 * 3 2 1 29 29 H 1.09005 * 109.46916 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47502 * 300.00278 * 5 4 3 31 31 H 1.09002 * 109.47115 * 60.00285 * 5 4 3 32 32 H 1.09000 * 109.47097 * 299.99971 * 6 4 3 33 33 H 1.08997 * 109.47344 * 59.99888 * 6 4 3 34 34 H 1.08997 * 109.46961 * 180.02562 * 6 4 3 35 35 H 0.97001 * 120.00052 * 5.17693 * 9 7 4 36 36 H 1.08000 * 119.91698 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.08781 * 179.69329 * 12 11 10 38 38 H 0.96998 * 120.00445 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.08422 * 179.71226 * 22 13 12 40 40 H 1.07999 * 119.91913 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9875 0.4251 1.2482 7 6 4.1485 2.5613 -0.0013 8 8 3.4357 3.5425 -0.0017 9 7 5.4888 2.7022 -0.0024 10 6 6.0558 3.9693 0.1059 11 6 5.4363 5.0609 -0.5024 12 6 5.9889 6.3040 -0.4057 13 6 7.1825 6.4856 0.3200 14 6 7.7578 7.7700 0.4290 15 1 8.8177 7.8735 0.6089 16 6 6.9550 8.9089 0.3041 17 7 5.6564 8.8119 0.4349 18 14 7.7365 10.5684 -0.0494 19 1 7.7134 10.8251 -1.5119 20 1 6.9757 11.6334 0.6522 21 1 9.1418 10.5660 0.4306 22 6 7.8022 5.3782 0.9316 23 6 7.2405 4.1405 0.8219 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 5.0731 0.3398 -1.2509 30 1 3.5430 -0.5702 -1.2502 31 1 3.6645 0.9666 -2.1400 32 1 3.6662 0.9659 2.1384 33 1 3.5441 -0.5706 1.2483 34 1 5.0741 0.3394 1.2480 35 1 6.0586 1.9209 -0.0787 36 1 4.5191 4.9207 -1.0550 37 1 5.5108 7.1475 -0.8814 38 1 5.0998 9.6015 0.3479 39 1 8.7200 5.5092 1.4857 40 1 7.7147 3.2904 1.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159737524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:13 Heat of formation + Delta-G solvation = -90.433164 kcal Electronic energy + Delta-G solvation = -21330.252498 eV Core-core repulsion = 18108.712680 eV Total energy + Delta-G solvation = -3221.539818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.62340 -39.53350 -38.64150 -36.23734 -35.90573 -34.57871 -31.42573 -30.81967 -28.38173 -28.25618 -26.98193 -26.49648 -24.14582 -23.15634 -22.15577 -20.26721 -19.25136 -18.52677 -17.86395 -17.14779 -16.91083 -16.68578 -16.23071 -16.05126 -15.73269 -15.17983 -14.93797 -14.51622 -14.22864 -14.16341 -13.95919 -13.67485 -13.35178 -13.23816 -13.06111 -12.81700 -12.78102 -12.67937 -12.40332 -12.30291 -12.06241 -11.74041 -11.73551 -11.66645 -11.21880 -10.71515 -10.65740 -10.39635 -9.45933 -8.89807 -8.62699 -6.27909 0.80586 1.13953 1.37498 1.43785 1.52489 1.75916 2.12330 2.20590 2.74400 2.95955 3.54149 3.72632 3.79328 3.88237 4.16589 4.43117 4.44378 4.46918 4.48548 4.60099 4.61316 4.76904 4.81549 4.86382 4.91175 4.97546 4.99306 5.10123 5.18176 5.29311 5.29977 5.30856 5.43325 5.68135 5.86465 6.08135 6.09912 6.11942 6.33392 6.66873 6.70830 6.91982 7.00181 7.38149 8.32576 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.003645 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.600963 B = 7679.060618 C = 8213.887532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.090 3.910 4 C -0.069 4.069 5 C -0.132 4.132 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.635 5.635 10 C 0.003 3.997 11 C -0.100 4.100 12 C -0.183 4.183 13 C 0.075 3.925 14 C -0.494 4.494 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.828 5.828 18 Si 0.986 3.014 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.224 4.224 23 C -0.096 4.096 24 H 0.043 0.957 25 H 0.109 0.891 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.287 0.713 39 H 0.111 0.889 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -16.447 -1.252 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.013 3.987 4 C -0.073 4.073 5 C -0.189 4.189 6 C -0.188 4.188 7 C 0.296 3.704 8 O -0.459 6.459 9 N -0.280 5.280 10 C -0.091 4.091 11 C -0.120 4.120 12 C -0.203 4.203 13 C 0.072 3.928 14 C -0.523 4.523 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.454 5.454 18 Si 0.806 3.194 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.176 1.176 22 C -0.244 4.244 23 C -0.116 4.116 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.700 -15.832 -1.219 16.559 hybrid contribution -0.122 1.209 -0.138 1.223 sum -4.821 -14.623 -1.357 15.457 Atomic orbital electron populations 1.22942 0.79560 1.04147 1.00449 1.87750 1.21135 1.26678 1.95511 1.22062 0.91828 0.84508 1.00332 1.20658 0.94428 0.91103 1.01078 1.21811 1.02506 1.00951 0.93666 1.21793 1.02524 1.00829 0.93679 1.21116 0.82388 0.91553 0.75337 1.90693 1.61952 1.42322 1.50910 1.42771 1.06345 1.07503 1.71381 1.17269 0.98375 0.85065 1.08346 1.20578 0.98599 0.93144 0.99657 1.20882 0.99819 0.95540 1.04076 1.18012 0.91767 0.93856 0.89154 1.19846 0.96347 0.91041 1.45081 0.89941 1.26872 0.94836 1.05375 0.91364 1.69946 1.06902 1.33386 1.35180 0.85143 0.79519 0.75484 0.79253 1.18852 1.19494 1.17611 1.20833 1.03471 0.93127 1.06965 1.20423 0.95463 0.97433 0.98247 0.93800 0.87262 0.93899 0.93992 0.93779 0.90290 0.89047 0.93241 0.93517 0.89057 0.90295 0.74505 0.88759 0.88737 0.90284 0.87091 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -8.61 9.35 -148.98 -1.39 -10.01 16 3 C 0.09 2.38 4.09 71.98 0.29 2.68 16 4 C -0.07 -1.73 0.71 -52.93 -0.04 -1.77 16 5 C -0.13 -2.58 8.22 71.98 0.59 -1.99 16 6 C -0.13 -2.64 8.23 71.98 0.59 -2.05 16 7 C 0.51 17.84 6.32 87.66 0.55 18.40 16 8 O -0.58 -26.51 13.42 -3.03 -0.04 -26.55 16 9 N -0.64 -21.40 5.08 -303.12 -1.54 -22.94 16 10 C 0.00 0.12 6.30 38.57 0.24 0.36 16 11 C -0.10 -5.19 8.61 22.13 0.19 -5.00 16 12 C -0.18 -10.38 8.63 22.48 0.19 -10.18 16 13 C 0.07 4.14 5.57 -21.28 -0.12 4.02 16 14 C -0.49 -27.04 9.03 23.39 0.21 -26.83 16 15 H 0.08 4.27 7.91 -2.91 -0.02 4.24 16 16 C 0.03 1.57 5.13 85.24 0.44 2.00 16 17 N -0.83 -45.84 10.98 21.82 0.24 -45.60 16 18 Si 0.99 39.16 29.59 68.60 2.03 41.19 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 22 C -0.22 -10.79 9.74 22.48 0.22 -10.57 16 23 C -0.10 -4.02 9.90 22.13 0.22 -3.80 16 24 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 28 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 29 H 0.08 1.24 7.45 -2.38 -0.02 1.23 16 30 H 0.09 1.53 7.68 -2.39 -0.02 1.51 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.57 7.68 -2.39 -0.02 1.55 16 34 H 0.08 1.30 7.69 -2.39 -0.02 1.28 16 35 H 0.42 10.22 7.68 -92.71 -0.71 9.51 16 36 H 0.09 5.03 6.24 -2.91 -0.02 5.02 16 37 H 0.09 5.69 6.19 -2.91 -0.02 5.67 16 38 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -69.32 331.09 4.46 -64.86 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.32 Total: 32.14 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.84 Total: -33.08 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -1.30 Total: -68.54 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.43 Total: -36.56 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -69.32 4.46 -64.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159737524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds