Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47097 * 304.99909 * 3 2 1 5 5 C 1.53001 * 109.47217 * 64.99307 * 3 2 1 6 6 C 1.53002 * 109.47386 * 184.99706 * 3 2 1 7 7 C 1.50701 * 109.47192 * 174.99730 * 6 3 2 8 8 O 1.21298 * 119.99894 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00072 * 180.02562 * 7 6 3 10 10 C 1.39994 * 119.99961 * 175.49296 * 9 7 6 11 11 C 1.38914 * 119.99915 * 215.12569 * 10 9 7 12 12 C 1.38008 * 119.99790 * 180.02562 * 11 10 9 13 13 C 1.38901 * 119.99971 * 0.02562 * 12 11 10 14 14 O 1.35779 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99993 * 5.34431 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95669 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96724 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47062 * 89.99532 * 19 17 15 21 21 H 1.48503 * 109.47117 * 209.99706 * 19 17 15 22 22 H 1.48505 * 109.47084 * 329.99459 * 19 17 15 23 23 C 1.38911 * 120.00514 * 0.25336 * 13 12 11 24 24 C 1.37999 * 119.99944 * 359.44805 * 23 13 12 25 25 H 1.08994 * 109.47054 * 300.00310 * 1 2 3 26 26 H 1.08997 * 109.46701 * 60.00367 * 1 2 3 27 27 H 1.08995 * 109.46846 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47673 * 239.99740 * 2 1 3 29 29 H 1.09002 * 109.46975 * 120.00022 * 2 1 3 30 30 H 1.09001 * 109.47301 * 300.00703 * 5 3 2 31 31 H 1.09002 * 109.46596 * 60.00294 * 5 3 2 32 32 H 1.08999 * 109.46948 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.46675 * 55.00285 * 6 3 2 34 34 H 1.08997 * 109.46957 * 295.00082 * 6 3 2 35 35 H 0.97001 * 119.99802 * 355.49268 * 9 7 6 36 36 H 1.07996 * 120.00271 * 0.03914 * 11 10 9 37 37 H 1.08003 * 120.00069 * 179.97438 * 12 11 10 38 38 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.99949 * 179.70423 * 23 13 12 40 40 H 1.08003 * 120.00671 * 180.27723 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4443 -0.1256 7 6 4.0571 2.8633 -0.2492 8 8 3.2661 3.7828 -0.2375 9 7 5.3762 3.1107 -0.3728 10 6 5.8262 4.4197 -0.5823 11 6 6.9323 4.6530 -1.3897 12 6 7.3762 5.9434 -1.5957 13 6 6.7174 7.0087 -0.9953 14 8 7.1546 8.2782 -1.1976 15 6 8.1619 8.4457 -2.0777 16 1 8.6381 7.5850 -2.5236 17 6 8.5867 9.7227 -2.4103 18 7 8.0064 10.7713 -1.8672 19 14 9.9830 9.9548 -3.6293 20 1 9.4293 10.0496 -5.0039 21 1 10.7205 11.2024 -3.3055 22 1 10.9092 8.7969 -3.5474 23 6 5.6149 6.7750 -0.1832 24 6 5.1671 5.4852 0.0179 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3968 31 1 2.0698 1.5876 2.1491 32 1 1.9990 3.1541 1.3074 33 1 3.8571 0.8800 -1.0113 34 1 4.0030 0.9836 0.7597 35 1 6.0137 2.3818 -0.3167 36 1 7.4446 3.8248 -1.8563 37 1 8.2364 6.1249 -2.2231 38 1 8.3033 11.6649 -2.1002 39 1 5.1057 7.6030 0.2874 40 1 4.3072 5.3038 0.6456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167399727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = -55.102618 kcal Electronic energy + Delta-G solvation = -20665.572235 eV Core-core repulsion = 17445.564464 eV Total energy + Delta-G solvation = -3220.007770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24201 -38.76325 -37.03307 -36.01240 -33.93543 -32.19110 -30.98240 -30.20014 -28.54381 -27.07942 -25.34169 -24.20650 -22.27705 -21.53978 -20.26414 -19.85786 -18.03542 -17.33808 -16.95945 -16.26687 -15.73303 -15.03378 -14.56005 -14.47824 -14.29010 -14.12106 -13.64308 -13.56004 -13.17882 -12.84076 -12.68108 -12.53845 -12.10366 -12.04261 -11.82162 -11.58087 -11.55885 -11.39046 -11.01862 -10.98951 -10.79164 -10.74372 -10.69613 -10.44556 -9.62142 -9.50189 -9.20676 -8.69207 -8.19353 -6.91929 -6.43632 -4.01786 2.11393 2.22255 2.88406 3.13343 3.14555 3.18691 3.35393 3.97551 4.54817 4.57489 4.64023 4.69127 5.02784 5.06749 5.11113 5.26598 5.34631 5.38011 5.48636 5.50750 5.56697 5.59842 5.76294 5.80103 5.86907 5.88063 6.02708 6.15926 6.23108 6.26541 6.30058 6.42117 6.82223 6.87170 7.00976 7.18281 7.23418 7.42263 7.74544 7.80962 8.00870 8.42656 9.01677 9.72424 10.74401 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.002897 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.414409 B = 9663.294631 C = 9940.509598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.079 0.921 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.504 3.496 8 O -0.524 6.524 9 N -0.664 5.664 10 C 0.034 3.966 11 C -0.091 4.091 12 C -0.220 4.220 13 C 0.147 3.853 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.180 4.180 24 C -0.067 4.067 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -20.529 3.223 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.212 4.212 6 C -0.176 4.176 7 C 0.291 3.709 8 O -0.400 6.400 9 N -0.308 5.308 10 C -0.058 4.058 11 C -0.111 4.111 12 C -0.240 4.240 13 C 0.093 3.907 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.199 4.199 24 C -0.087 4.087 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.901 -19.411 3.311 21.217 hybrid contribution 1.170 -0.351 -0.708 1.412 sum -6.731 -19.762 2.603 21.038 Atomic orbital electron populations 1.21807 0.95773 1.01323 1.02193 1.21593 0.96175 0.96191 1.01766 1.20920 0.92701 0.95867 1.00058 0.90289 1.22001 1.01122 1.02342 0.95716 1.21759 0.97888 0.93945 1.03994 1.20753 0.81992 0.91660 0.76473 1.90671 1.54534 1.46253 1.48513 1.43300 1.07357 1.08230 1.71924 1.17288 1.00147 0.83492 1.04903 1.20488 0.96760 0.96534 0.97331 1.20971 1.04234 0.91655 1.07174 1.19420 0.92127 0.85741 0.93436 1.83990 1.47810 1.20972 1.55259 1.21310 1.10594 0.93801 1.21089 0.89099 1.25291 0.98935 0.94227 0.98130 1.70049 1.40198 0.98379 1.41089 0.85712 0.79660 0.78388 0.79648 1.19891 1.20273 1.19232 1.20160 0.98284 0.96619 1.04878 1.20740 0.98976 0.90806 0.98196 0.92364 0.92682 0.92997 0.92103 0.92048 0.92771 0.93526 0.90533 0.89041 0.89079 0.76497 0.87233 0.85147 0.92022 0.86171 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.02 16 3 C -0.08 -0.73 2.04 -90.62 -0.18 -0.91 16 4 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 5 C -0.15 -1.59 8.69 37.16 0.32 -1.27 16 6 C -0.14 -1.21 5.18 -27.88 -0.14 -1.36 16 7 C 0.50 6.80 7.39 -10.99 -0.08 6.72 16 8 O -0.52 -9.10 11.40 5.54 0.06 -9.04 16 9 N -0.66 -8.91 5.34 -9.82 -0.05 -8.96 16 10 C 0.03 0.61 6.30 -83.63 -0.53 0.08 16 11 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 12 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 13 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 14 O -0.18 -5.11 9.75 0.02 0.00 -5.11 16 15 C -0.39 -10.98 9.48 30.88 0.29 -10.69 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.47 13.67 55.48 0.76 -24.72 16 19 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 24 C -0.07 -1.34 8.69 -39.42 -0.34 -1.68 16 25 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 3.86 8.82 -40.82 -0.36 3.50 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.79 5.63 -52.48 -0.30 2.49 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 40 H 0.13 2.50 6.23 -52.48 -0.33 2.17 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -32.49 329.45 -6.84 -39.33 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.60 Total: 6.14 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.95 Total: -18.13 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.71 Total: -33.68 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.06 Total: -14.14 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.49 -6.84 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.773 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds