Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47097 * 304.99909 * 3 2 1 5 5 C 1.53001 * 109.47217 * 64.99307 * 3 2 1 6 6 C 1.53002 * 109.47386 * 184.99706 * 3 2 1 7 7 C 1.50701 * 109.47192 * 174.99730 * 6 3 2 8 8 O 1.21298 * 119.99894 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00072 * 180.02562 * 7 6 3 10 10 C 1.39994 * 119.99961 * 175.49296 * 9 7 6 11 11 C 1.38914 * 119.99915 * 215.12569 * 10 9 7 12 12 C 1.38008 * 119.99790 * 180.02562 * 11 10 9 13 13 C 1.38901 * 119.99971 * 0.02562 * 12 11 10 14 14 O 1.35779 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99993 * 5.34431 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95669 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96724 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47062 * 89.99532 * 19 17 15 21 21 H 1.48503 * 109.47117 * 209.99706 * 19 17 15 22 22 H 1.48505 * 109.47084 * 329.99459 * 19 17 15 23 23 C 1.38911 * 120.00514 * 0.25336 * 13 12 11 24 24 C 1.37999 * 119.99944 * 359.44805 * 23 13 12 25 25 H 1.08994 * 109.47054 * 300.00310 * 1 2 3 26 26 H 1.08997 * 109.46701 * 60.00367 * 1 2 3 27 27 H 1.08995 * 109.46846 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47673 * 239.99740 * 2 1 3 29 29 H 1.09002 * 109.46975 * 120.00022 * 2 1 3 30 30 H 1.09001 * 109.47301 * 300.00703 * 5 3 2 31 31 H 1.09002 * 109.46596 * 60.00294 * 5 3 2 32 32 H 1.08999 * 109.46948 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.46675 * 55.00285 * 6 3 2 34 34 H 1.08997 * 109.46957 * 295.00082 * 6 3 2 35 35 H 0.97001 * 119.99802 * 355.49268 * 9 7 6 36 36 H 1.07996 * 120.00271 * 0.03914 * 11 10 9 37 37 H 1.08003 * 120.00069 * 179.97438 * 12 11 10 38 38 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.99949 * 179.70423 * 23 13 12 40 40 H 1.08003 * 120.00671 * 180.27723 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4443 -0.1256 7 6 4.0571 2.8633 -0.2492 8 8 3.2661 3.7828 -0.2375 9 7 5.3762 3.1107 -0.3728 10 6 5.8262 4.4197 -0.5823 11 6 6.9323 4.6530 -1.3897 12 6 7.3762 5.9434 -1.5957 13 6 6.7174 7.0087 -0.9953 14 8 7.1546 8.2782 -1.1976 15 6 8.1619 8.4457 -2.0777 16 1 8.6381 7.5850 -2.5236 17 6 8.5867 9.7227 -2.4103 18 7 8.0064 10.7713 -1.8672 19 14 9.9830 9.9548 -3.6293 20 1 9.4293 10.0496 -5.0039 21 1 10.7205 11.2024 -3.3055 22 1 10.9092 8.7969 -3.5474 23 6 5.6149 6.7750 -0.1832 24 6 5.1671 5.4852 0.0179 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3968 31 1 2.0698 1.5876 2.1491 32 1 1.9990 3.1541 1.3074 33 1 3.8571 0.8800 -1.0113 34 1 4.0030 0.9836 0.7597 35 1 6.0137 2.3818 -0.3167 36 1 7.4446 3.8248 -1.8563 37 1 8.2364 6.1249 -2.2231 38 1 8.3033 11.6649 -2.1002 39 1 5.1057 7.6030 0.2874 40 1 4.3072 5.3038 0.6456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167399727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = -75.896046 kcal Electronic energy + Delta-G solvation = -20666.473905 eV Core-core repulsion = 17445.564464 eV Total energy + Delta-G solvation = -3220.909441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52606 -40.42050 -38.41700 -37.09103 -35.35170 -34.15937 -31.88101 -31.73432 -29.80822 -28.24355 -27.24548 -25.02036 -23.91495 -22.97476 -21.48873 -20.69192 -19.86449 -18.95740 -18.33203 -17.67624 -16.66437 -16.36666 -16.19647 -15.75912 -15.51736 -15.35256 -15.13878 -14.96977 -14.54968 -14.23651 -14.01558 -13.59957 -13.41846 -13.29269 -13.22795 -12.77713 -12.75872 -12.60478 -12.43959 -12.15359 -12.10941 -11.72250 -11.52182 -11.36624 -11.33582 -11.02624 -10.63689 -10.48797 -9.84511 -8.60223 -8.45538 -6.13217 0.51362 0.55830 1.36468 1.45377 1.54466 1.73500 2.18013 2.23681 2.82928 3.15557 3.52142 3.74821 3.87881 4.02675 4.06636 4.13656 4.30482 4.48839 4.49549 4.61561 4.65432 4.73324 4.75345 4.79404 4.87111 4.95663 5.07344 5.17360 5.19649 5.21088 5.27167 5.31886 5.36051 5.48564 5.53665 5.59146 5.63281 5.69924 6.02630 6.18928 6.62335 6.98477 7.33852 7.79616 8.77836 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.002897 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.414409 B = 9663.294631 C = 9940.509598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.053 0.947 5 C -0.154 4.154 6 C -0.125 4.125 7 C 0.500 3.500 8 O -0.566 6.566 9 N -0.653 5.653 10 C 0.063 3.937 11 C -0.081 4.081 12 C -0.221 4.221 13 C 0.106 3.894 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.248 1.248 23 C -0.192 4.192 24 C -0.074 4.074 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.426 0.574 36 H 0.159 0.841 37 H 0.132 0.868 38 H 0.272 0.728 39 H 0.109 0.891 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 -25.128 2.500 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.211 4.211 6 C -0.164 4.164 7 C 0.290 3.710 8 O -0.444 6.444 9 N -0.300 5.300 10 C -0.031 4.031 11 C -0.101 4.101 12 C -0.241 4.241 13 C 0.055 3.945 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.562 5.562 19 Si 0.840 3.160 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.172 1.172 23 C -0.212 4.212 24 C -0.094 4.094 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.264 0.736 36 H 0.177 0.823 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.016 -24.115 2.609 25.250 hybrid contribution 0.645 0.766 -0.348 1.059 sum -6.371 -23.350 2.261 24.309 Atomic orbital electron populations 1.21834 0.96096 1.01929 1.01562 1.21546 0.95887 0.94468 1.03107 1.20914 0.93289 0.97052 0.98373 0.92800 1.21966 1.01319 1.00701 0.97090 1.21820 0.97137 0.90614 1.06819 1.21720 0.81304 0.93316 0.74690 1.90683 1.55608 1.48128 1.49988 1.43292 1.08254 1.06890 1.71597 1.17435 0.98548 0.85141 1.02005 1.20867 0.96431 0.96352 0.96405 1.21139 1.03948 0.92416 1.06596 1.19872 0.93641 0.85629 0.95315 1.83958 1.49423 1.23311 1.57228 1.21876 1.10859 0.94805 1.21341 0.87614 1.26656 1.01971 0.93519 1.00203 1.70210 1.43007 0.99033 1.43916 0.84550 0.75920 0.78899 0.76596 1.18962 1.19791 1.17182 1.20276 0.98217 0.97704 1.05032 1.20855 0.99348 0.90539 0.98701 0.92866 0.93561 0.91753 0.90774 0.90577 0.92665 0.91945 0.93809 0.86020 0.85943 0.73571 0.82318 0.85044 0.91898 0.87259 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.67 71.98 0.70 -1.20 16 2 C -0.11 -1.23 5.40 30.59 0.17 -1.06 16 3 C -0.08 -1.26 2.04 -10.79 -0.02 -1.28 16 4 H 0.05 1.15 7.96 -2.39 -0.02 1.14 16 5 C -0.15 -2.94 8.69 71.98 0.63 -2.31 16 6 C -0.12 -1.66 5.18 29.85 0.15 -1.51 16 7 C 0.50 11.97 7.39 87.66 0.65 12.61 16 8 O -0.57 -19.13 11.40 -3.08 -0.04 -19.16 16 9 N -0.65 -14.87 5.34 -303.37 -1.62 -16.49 16 10 C 0.06 2.07 6.30 38.16 0.24 2.31 16 11 C -0.08 -2.66 9.96 22.38 0.22 -2.44 16 12 C -0.22 -9.47 9.16 22.37 0.20 -9.27 16 13 C 0.11 5.44 6.65 22.59 0.15 5.59 16 14 O -0.23 -14.29 9.75 -22.83 -0.22 -14.51 16 15 C -0.41 -24.11 9.48 67.91 0.64 -23.46 16 16 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 18 N -0.92 -57.56 13.67 21.61 0.30 -57.27 16 19 Si 1.02 42.81 29.55 68.60 2.03 44.83 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.19 -9.00 9.98 22.37 0.22 -8.78 16 24 C -0.07 -2.96 8.69 22.38 0.19 -2.76 16 25 H 0.05 0.69 6.56 -2.39 -0.02 0.67 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 1.01 6.56 -2.39 -0.02 0.99 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.13 5.95 -2.39 -0.01 1.12 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.43 5.77 8.82 -92.71 -0.82 4.96 16 36 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.13 5.54 5.63 -2.91 -0.02 5.52 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 40 H 0.13 5.17 6.23 -2.91 -0.02 5.16 16 Total: -1.00 -77.46 329.45 5.29 -72.16 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.24 Total: 25.03 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 4.61 Total: -34.60 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.32 Total: -73.76 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.26 Total: -33.67 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -77.46 5.29 -72.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.731 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds