Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 H 1.09000 * 109.47167 * 54.99912 * 3 2 1 5 5 C 1.52999 * 109.47363 * 295.00024 * 3 2 1 6 6 C 1.53004 * 109.47149 * 175.00192 * 3 2 1 7 7 C 1.50696 * 109.47022 * 185.00275 * 6 3 2 8 8 O 1.21293 * 120.00426 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99908 * 179.97438 * 7 6 3 10 10 C 1.39996 * 120.00315 * 185.20552 * 9 7 6 11 11 C 1.38914 * 120.00432 * 213.40281 * 10 9 7 12 12 C 1.38000 * 119.99696 * 179.76858 * 11 10 9 13 13 C 1.38912 * 120.00081 * 0.48400 * 12 11 10 14 14 O 1.35777 * 119.99798 * 179.74598 * 13 12 11 15 15 C 1.34809 * 117.00089 * 185.93441 * 14 13 12 16 16 H 1.08005 * 119.99874 * 5.40868 * 15 14 13 17 17 C 1.38630 * 120.00351 * 185.40738 * 15 14 13 18 18 N 1.31581 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00543 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46650 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47275 * 119.99741 * 19 17 15 22 22 H 1.48497 * 109.47508 * 240.00339 * 19 17 15 23 23 C 1.38906 * 120.00543 * 359.76976 * 13 12 11 24 24 C 1.38004 * 119.99807 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47027 * 59.99764 * 1 2 3 26 26 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46885 * 299.99905 * 1 2 3 28 28 H 1.08999 * 109.46885 * 240.00095 * 2 1 3 29 29 H 1.09001 * 109.47027 * 120.00236 * 2 1 3 30 30 H 1.09007 * 109.47103 * 60.00171 * 5 3 2 31 31 H 1.09002 * 109.47397 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.47184 * 300.00435 * 5 3 2 33 33 H 1.08998 * 109.47241 * 64.99577 * 6 3 2 34 34 H 1.08999 * 109.46972 * 305.00159 * 6 3 2 35 35 H 0.97003 * 119.99720 * 5.20876 * 9 7 6 36 36 H 1.07998 * 120.00278 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.99906 * 180.21122 * 12 11 10 38 38 H 0.96995 * 120.00084 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.00302 * 179.97438 * 23 13 12 40 40 H 1.07995 * 120.00157 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0570 2.8633 0.2493 8 8 3.2660 3.7828 0.2375 9 7 5.3761 3.1107 0.3729 10 6 5.8252 4.4176 0.5969 11 6 7.0400 4.8349 0.0680 12 6 7.4804 6.1246 0.2849 13 6 6.7136 7.0025 1.0406 14 8 7.1494 8.2699 1.2583 15 6 6.4213 9.0315 2.0993 16 1 5.5866 8.6006 2.6324 17 6 6.7439 10.3676 2.2799 18 7 7.7604 10.8925 1.6300 19 14 5.7354 11.4227 3.4457 20 1 4.6559 10.6005 4.0490 21 1 6.6137 11.9512 4.5202 22 1 5.1353 12.5548 2.6952 23 6 5.5013 6.5837 1.5740 24 6 5.0584 5.2956 1.3527 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5489 2.1253 -1.3969 31 1 1.9982 3.1544 -1.3071 32 1 2.0698 1.5875 -2.1491 33 1 4.0030 0.9835 -0.7596 34 1 3.8571 0.8800 1.0112 35 1 6.0143 2.3832 0.3066 36 1 7.6383 4.1510 -0.5157 37 1 8.4232 6.4501 -0.1291 38 1 7.9860 11.8275 1.7561 39 1 4.9054 7.2661 2.1618 40 1 4.1161 4.9698 1.7677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167399828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -56.142861 kcal Electronic energy + Delta-G solvation = -20724.445081 eV Core-core repulsion = 17504.392202 eV Total energy + Delta-G solvation = -3220.052879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23401 -38.75762 -37.03240 -36.02441 -33.92134 -32.18343 -30.98432 -30.18771 -28.54560 -27.11202 -25.28156 -24.20777 -22.37708 -21.51738 -20.21078 -19.78362 -18.08300 -17.51124 -16.71615 -16.37636 -15.68687 -15.02163 -14.58762 -14.49300 -14.26658 -14.00574 -13.58099 -13.57119 -13.28406 -12.87888 -12.73566 -12.52576 -12.14028 -11.97614 -11.72625 -11.56326 -11.50403 -11.47021 -11.05792 -10.92557 -10.79863 -10.73105 -10.71124 -10.40973 -9.67906 -9.52657 -9.19859 -8.67534 -8.19703 -6.90541 -6.43449 -4.00855 2.09513 2.21492 2.91244 3.15252 3.16346 3.21863 3.35103 3.99020 4.55420 4.58267 4.62995 4.70287 5.02299 5.07057 5.12319 5.25872 5.26949 5.38999 5.49023 5.51084 5.60024 5.68325 5.74458 5.76580 5.87178 5.88711 6.03531 6.15936 6.18919 6.26182 6.35253 6.43362 6.74674 6.86894 7.01994 7.12450 7.30726 7.44943 7.72168 7.81223 8.01787 8.43287 9.02568 9.72336 10.74692 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003228 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.108428 B = 8671.814424 C = 9384.435281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.503 3.497 8 O -0.522 6.522 9 N -0.664 5.664 10 C 0.037 3.963 11 C -0.095 4.095 12 C -0.178 4.178 13 C 0.145 3.855 14 O -0.177 6.177 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.218 4.218 24 C -0.065 4.065 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -20.356 -2.585 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.212 4.212 6 C -0.176 4.176 7 C 0.290 3.710 8 O -0.398 6.398 9 N -0.309 5.309 10 C -0.055 4.055 11 C -0.115 4.115 12 C -0.198 4.198 13 C 0.091 3.909 14 O -0.081 6.081 15 C -0.465 4.465 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.238 4.238 24 C -0.085 4.085 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.320 -19.360 -2.680 21.241 hybrid contribution -0.143 0.120 0.506 0.539 sum -8.463 -19.239 -2.175 21.131 Atomic orbital electron populations 1.21810 0.95776 1.01322 1.02195 1.21592 0.96174 0.96183 1.01765 1.20918 0.92702 0.95860 1.00046 0.90319 1.22003 1.01103 1.02406 0.95708 1.21758 0.97883 0.93937 1.04005 1.20750 0.82147 0.91653 0.76414 1.90693 1.54441 1.46312 1.48376 1.43330 1.07496 1.08354 1.71709 1.17262 0.97315 0.85501 1.05470 1.20350 0.95790 0.95451 0.99917 1.19992 1.01552 0.92547 1.05667 1.19412 0.91728 0.86571 0.93174 1.83987 1.48379 1.17936 1.57773 1.21371 1.13543 0.91645 1.19985 0.89036 1.25288 0.97020 0.96081 0.98183 1.70056 1.25885 1.13924 1.39948 0.85649 0.79100 0.79574 0.79142 1.19051 1.20156 1.20138 1.21093 0.98230 0.96823 1.07657 1.20702 0.98760 0.93075 0.95922 0.92365 0.92991 0.92686 0.92045 0.92095 0.92791 0.90489 0.93531 0.89095 0.89011 0.76517 0.86784 0.86083 0.92092 0.85224 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.08 -0.74 2.04 -90.62 -0.18 -0.92 16 4 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 5 C -0.16 -1.66 8.69 37.16 0.32 -1.34 16 6 C -0.14 -1.22 5.18 -27.88 -0.14 -1.37 16 7 C 0.50 6.87 7.28 -10.99 -0.08 6.79 16 8 O -0.52 -9.29 11.67 5.55 0.06 -9.22 16 9 N -0.66 -8.93 5.34 -9.82 -0.05 -8.98 16 10 C 0.04 0.66 6.28 -83.62 -0.52 0.13 16 11 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 12 C -0.18 -3.74 9.98 -39.42 -0.39 -4.13 16 13 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 14 O -0.18 -5.11 9.75 0.02 0.00 -5.11 16 15 C -0.39 -11.03 9.44 30.88 0.29 -10.74 16 16 H 0.09 2.43 5.29 -52.48 -0.28 2.15 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 19 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.22 -4.99 9.13 -39.42 -0.36 -5.35 16 24 C -0.06 -1.31 8.65 -39.41 -0.34 -1.66 16 25 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 31 H 0.08 1.06 5.95 -51.93 -0.31 0.76 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.81 8.82 -40.82 -0.36 3.45 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 2.99 5.71 -52.49 -0.30 2.69 16 40 H 0.12 2.39 6.43 -52.49 -0.34 2.05 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -32.72 329.84 -6.85 -39.57 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.62 Total: 5.85 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.95 Total: -18.15 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.71 Total: -33.73 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.06 Total: -14.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.72 -6.85 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.574 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds