Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 H 1.09000 * 109.47167 * 54.99912 * 3 2 1 5 5 C 1.52999 * 109.47363 * 295.00024 * 3 2 1 6 6 C 1.53004 * 109.47149 * 175.00192 * 3 2 1 7 7 C 1.50696 * 109.47022 * 185.00275 * 6 3 2 8 8 O 1.21293 * 120.00426 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99908 * 179.97438 * 7 6 3 10 10 C 1.39996 * 120.00315 * 185.20552 * 9 7 6 11 11 C 1.38914 * 120.00432 * 213.40281 * 10 9 7 12 12 C 1.38000 * 119.99696 * 179.76858 * 11 10 9 13 13 C 1.38912 * 120.00081 * 0.48400 * 12 11 10 14 14 O 1.35777 * 119.99798 * 179.74598 * 13 12 11 15 15 C 1.34809 * 117.00089 * 185.93441 * 14 13 12 16 16 H 1.08005 * 119.99874 * 5.40868 * 15 14 13 17 17 C 1.38630 * 120.00351 * 185.40738 * 15 14 13 18 18 N 1.31581 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00543 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46650 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47275 * 119.99741 * 19 17 15 22 22 H 1.48497 * 109.47508 * 240.00339 * 19 17 15 23 23 C 1.38906 * 120.00543 * 359.76976 * 13 12 11 24 24 C 1.38004 * 119.99807 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47027 * 59.99764 * 1 2 3 26 26 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46885 * 299.99905 * 1 2 3 28 28 H 1.08999 * 109.46885 * 240.00095 * 2 1 3 29 29 H 1.09001 * 109.47027 * 120.00236 * 2 1 3 30 30 H 1.09007 * 109.47103 * 60.00171 * 5 3 2 31 31 H 1.09002 * 109.47397 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.47184 * 300.00435 * 5 3 2 33 33 H 1.08998 * 109.47241 * 64.99577 * 6 3 2 34 34 H 1.08999 * 109.46972 * 305.00159 * 6 3 2 35 35 H 0.97003 * 119.99720 * 5.20876 * 9 7 6 36 36 H 1.07998 * 120.00278 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.99906 * 180.21122 * 12 11 10 38 38 H 0.96995 * 120.00084 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.00302 * 179.97438 * 23 13 12 40 40 H 1.07995 * 120.00157 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0570 2.8633 0.2493 8 8 3.2660 3.7828 0.2375 9 7 5.3761 3.1107 0.3729 10 6 5.8252 4.4176 0.5969 11 6 7.0400 4.8349 0.0680 12 6 7.4804 6.1246 0.2849 13 6 6.7136 7.0025 1.0406 14 8 7.1494 8.2699 1.2583 15 6 6.4213 9.0315 2.0993 16 1 5.5866 8.6006 2.6324 17 6 6.7439 10.3676 2.2799 18 7 7.7604 10.8925 1.6300 19 14 5.7354 11.4227 3.4457 20 1 4.6559 10.6005 4.0490 21 1 6.6137 11.9512 4.5202 22 1 5.1353 12.5548 2.6952 23 6 5.5013 6.5837 1.5740 24 6 5.0584 5.2956 1.3527 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5489 2.1253 -1.3969 31 1 1.9982 3.1544 -1.3071 32 1 2.0698 1.5875 -2.1491 33 1 4.0030 0.9835 -0.7596 34 1 3.8571 0.8800 1.0112 35 1 6.0143 2.3832 0.3066 36 1 7.6383 4.1510 -0.5157 37 1 8.4232 6.4501 -0.1291 38 1 7.9860 11.8275 1.7561 39 1 4.9054 7.2661 2.1618 40 1 4.1161 4.9698 1.7677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167399828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -77.228941 kcal Electronic energy + Delta-G solvation = -20725.359442 eV Core-core repulsion = 17504.392202 eV Total energy + Delta-G solvation = -3220.967240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52758 -40.41557 -38.42919 -37.10466 -35.34628 -34.17665 -31.92432 -31.69070 -29.82943 -28.27624 -27.21818 -25.04386 -23.95654 -23.01337 -21.33659 -20.70860 -19.92188 -19.13522 -18.03320 -17.86275 -16.74423 -16.28041 -16.06959 -15.87127 -15.49608 -15.44054 -15.09583 -14.98223 -14.61367 -14.17633 -14.11127 -13.60456 -13.43610 -13.24387 -13.20672 -12.79046 -12.77394 -12.63644 -12.46890 -12.15875 -12.12265 -11.73610 -11.52829 -11.37206 -11.32663 -11.14350 -10.71655 -10.44164 -9.84676 -8.58502 -8.48446 -6.14850 0.50788 0.54864 1.33910 1.40836 1.51955 1.74516 2.16366 2.22648 2.81632 3.14990 3.50275 3.74161 3.86968 4.02693 4.07643 4.11075 4.30549 4.47688 4.48671 4.63143 4.64714 4.70001 4.76207 4.78526 4.86522 4.94426 5.06597 5.11970 5.16524 5.20988 5.26878 5.33984 5.35475 5.44774 5.53595 5.59767 5.64720 5.69723 6.01078 6.17665 6.62233 6.96564 7.33945 7.76371 8.74870 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003228 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.108428 B = 8671.814424 C = 9384.435281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.077 4.077 4 H 0.054 0.946 5 C -0.153 4.153 6 C -0.125 4.125 7 C 0.499 3.501 8 O -0.567 6.567 9 N -0.653 5.653 10 C 0.066 3.934 11 C -0.080 4.080 12 C -0.180 4.180 13 C 0.104 3.896 14 O -0.228 6.228 15 C -0.412 4.412 16 H 0.096 0.904 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.017 2.983 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.228 4.228 24 C -0.077 4.077 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.426 0.574 36 H 0.167 0.833 37 H 0.128 0.872 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 -24.221 -2.920 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.211 4.211 6 C -0.164 4.164 7 C 0.289 3.711 8 O -0.445 6.445 9 N -0.301 5.301 10 C -0.028 4.028 11 C -0.100 4.100 12 C -0.199 4.199 13 C 0.053 3.947 14 O -0.135 6.135 15 C -0.488 4.488 16 H 0.113 0.887 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.836 3.164 20 H -0.179 1.179 21 H -0.189 1.189 22 H -0.193 1.193 23 C -0.248 4.248 24 C -0.098 4.098 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.265 0.735 36 H 0.184 0.816 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.829 -23.328 -3.029 25.126 hybrid contribution -0.080 0.942 0.474 1.058 sum -8.909 -22.386 -2.555 24.229 Atomic orbital electron populations 1.21838 0.96107 1.01943 1.01549 1.21544 0.95878 0.94412 1.03144 1.20913 0.93330 0.97077 0.98292 0.92777 1.21962 1.01305 1.00595 0.97196 1.21822 0.97111 0.90583 1.06874 1.21729 0.81451 0.93296 0.74619 1.90706 1.55564 1.48247 1.49976 1.43319 1.08382 1.07084 1.71292 1.17425 0.96307 0.86960 1.02118 1.20794 0.95767 0.94581 0.98888 1.20342 1.01503 0.93467 1.04637 1.19937 0.93267 0.86131 0.95342 1.83943 1.50015 1.19847 1.59667 1.21781 1.13864 0.92419 1.20764 0.88674 1.26535 0.98235 0.97090 1.00024 1.70183 1.28299 1.14560 1.42615 0.84559 0.77583 0.77426 0.76824 1.17946 1.18948 1.19279 1.21079 0.97935 0.97887 1.07859 1.20781 0.99364 0.92659 0.96955 0.92912 0.91715 0.93551 0.90551 0.90714 0.92671 0.94055 0.91912 0.85895 0.85957 0.73499 0.81560 0.85371 0.91769 0.86761 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.24 5.40 30.59 0.17 -1.07 16 3 C -0.08 -1.28 2.04 -10.79 -0.02 -1.30 16 4 H 0.05 1.17 7.96 -2.39 -0.02 1.15 16 5 C -0.15 -3.04 8.69 71.98 0.63 -2.41 16 6 C -0.12 -1.69 5.18 29.85 0.15 -1.53 16 7 C 0.50 12.14 7.28 87.66 0.64 12.77 16 8 O -0.57 -19.65 11.67 -3.07 -0.04 -19.68 16 9 N -0.65 -14.89 5.34 -303.37 -1.62 -16.51 16 10 C 0.07 2.18 6.28 38.16 0.24 2.42 16 11 C -0.08 -2.58 9.96 22.38 0.22 -2.36 16 12 C -0.18 -7.50 9.98 22.37 0.22 -7.27 16 13 C 0.10 5.31 6.65 22.59 0.15 5.46 16 14 O -0.23 -13.98 9.75 -22.83 -0.22 -14.20 16 15 C -0.41 -24.75 9.44 67.91 0.64 -24.11 16 16 H 0.10 5.38 5.29 -2.91 -0.02 5.36 16 17 C -0.02 -1.24 5.49 84.82 0.47 -0.77 16 18 N -0.92 -57.04 13.67 21.61 0.30 -56.75 16 19 Si 1.02 44.22 29.55 68.60 2.03 46.25 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C -0.23 -10.85 9.13 22.37 0.20 -10.65 16 24 C -0.08 -3.14 8.65 22.38 0.19 -2.95 16 25 H 0.05 0.69 6.56 -2.39 -0.02 0.68 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 1.04 6.57 -2.38 -0.02 1.02 16 31 H 0.04 1.12 5.95 -2.39 -0.01 1.11 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.43 5.66 8.82 -92.71 -0.82 4.84 16 36 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.13 5.09 8.06 -2.91 -0.02 5.06 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.11 5.65 5.71 -2.91 -0.02 5.64 16 40 H 0.12 4.85 6.43 -2.91 -0.02 4.83 16 Total: -1.00 -78.12 329.84 5.28 -72.85 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.23 Total: 23.05 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 4.60 Total: -34.99 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.33 Total: -73.26 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.26 Total: -33.89 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.12 5.28 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.380 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds