Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 H 1.08998 * 109.47322 * 305.00004 * 3 2 1 5 5 C 1.52996 * 109.47131 * 65.00034 * 3 2 1 6 6 C 1.53005 * 109.46948 * 184.99954 * 3 2 1 7 7 C 1.50695 * 109.47168 * 174.99844 * 6 3 2 8 8 O 1.21282 * 119.99947 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00110 * 180.02562 * 7 6 3 10 10 C 1.39913 * 119.99871 * 184.51663 * 9 7 6 11 11 C 1.38972 * 120.03294 * 144.90885 * 10 9 7 12 12 C 1.38159 * 120.06260 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.14365 * 0.02562 * 12 11 10 14 14 C 1.38905 * 120.07020 * 0.02562 * 13 12 11 15 15 O 1.35754 * 120.03686 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99437 * 5.28983 * 15 14 13 17 17 H 1.07999 * 120.00473 * 354.96290 * 16 15 14 18 18 C 1.38655 * 119.99509 * 174.96441 * 16 15 14 19 19 N 1.31558 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00112 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47360 * 90.00455 * 20 18 16 22 22 H 1.48503 * 109.47035 * 209.99935 * 20 18 16 23 23 H 1.48496 * 109.47079 * 329.99993 * 20 18 16 24 24 C 1.38714 * 120.04042 * 324.88420 * 10 9 7 25 25 H 1.09008 * 109.46749 * 300.00093 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99685 * 1 2 3 27 27 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46929 * 240.00115 * 2 1 3 29 29 H 1.08995 * 109.47016 * 119.99836 * 2 1 3 30 30 H 1.09008 * 109.46750 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.47387 * 299.99513 * 5 3 2 32 32 H 1.09002 * 109.46861 * 60.00274 * 5 3 2 33 33 H 1.09007 * 109.46810 * 54.99956 * 6 3 2 34 34 H 1.08997 * 109.47215 * 295.00642 * 6 3 2 35 35 H 0.96994 * 119.99477 * 4.51030 * 9 7 6 36 36 H 1.07996 * 119.96400 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.92869 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.96543 * 179.97438 * 13 12 11 39 39 H 0.96999 * 120.00336 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.06299 * 359.75071 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.0570 2.8634 -0.2493 8 8 3.2660 3.7827 -0.2384 9 7 5.3761 3.1108 -0.3729 10 6 5.8415 4.4301 -0.3926 11 6 7.0634 4.7454 0.1896 12 6 7.5239 6.0478 0.1701 13 6 6.7715 7.0408 -0.4273 14 6 5.5489 6.7323 -1.0100 15 8 4.8105 7.7084 -1.5972 16 6 5.3685 8.9332 -1.6780 17 1 6.3249 9.1226 -1.2134 18 6 4.7144 9.9496 -2.3574 19 7 5.2590 11.1445 -2.4366 20 14 3.0604 9.6219 -3.1614 21 1 1.9731 9.9082 -2.1915 22 1 2.9060 10.4976 -4.3507 23 1 2.9874 8.1994 -3.5813 24 6 5.0842 5.4248 -0.9935 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9990 3.1542 1.3074 31 1 0.5490 2.1253 1.3969 32 1 2.0700 1.5875 2.1491 33 1 3.8571 0.8800 -1.0114 34 1 4.0030 0.9836 0.7596 35 1 6.0027 2.3742 -0.4482 36 1 7.6535 3.9714 0.6577 37 1 8.4740 6.2903 0.6229 38 1 7.1340 8.0581 -0.4405 39 1 4.8013 11.8557 -2.9116 40 1 4.1363 5.1815 -1.4506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167399950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = -52.557527 kcal Electronic energy + Delta-G solvation = -21023.016101 eV Core-core repulsion = 17803.118694 eV Total energy + Delta-G solvation = -3219.897407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35626 -38.86980 -37.11087 -36.13729 -34.13057 -32.34567 -31.10246 -29.63683 -28.86079 -27.36754 -25.20581 -24.31667 -22.43725 -21.30104 -20.38245 -19.83914 -18.05948 -17.65454 -16.81830 -15.87331 -15.50120 -15.22690 -15.05642 -14.56856 -14.41771 -14.00812 -13.76214 -13.71518 -13.18708 -12.94014 -12.64175 -12.41156 -12.26364 -12.10434 -11.97664 -11.61758 -11.49207 -11.19291 -11.02727 -10.91959 -10.79652 -10.75788 -10.72291 -10.19613 -9.81523 -9.59779 -9.18554 -8.83708 -7.79101 -7.29424 -6.38433 -4.04912 1.94109 2.24659 2.81955 3.20336 3.27187 3.31173 3.46883 4.28726 4.46458 4.56460 4.58674 4.70172 4.88930 5.06023 5.07526 5.15366 5.25884 5.39600 5.49491 5.52059 5.58111 5.60248 5.73600 5.77681 5.89078 5.89955 6.05110 6.08745 6.13839 6.26978 6.29253 6.42446 6.56729 6.82834 6.95595 7.13431 7.34623 7.60992 7.64325 7.83747 8.06259 8.33082 8.97189 9.60694 10.69048 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.004281 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.511929 B = 6538.334813 C = 7831.754326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.080 0.920 5 C -0.156 4.156 6 C -0.135 4.135 7 C 0.505 3.495 8 O -0.508 6.508 9 N -0.672 5.672 10 C 0.173 3.827 11 C -0.228 4.228 12 C -0.060 4.060 13 C -0.233 4.233 14 C 0.173 3.827 15 O -0.214 6.214 16 C -0.388 4.388 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.187 4.187 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -21.965 4.967 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.097 4.097 4 H 0.098 0.902 5 C -0.213 4.213 6 C -0.175 4.175 7 C 0.292 3.708 8 O -0.383 6.383 9 N -0.317 5.317 10 C 0.079 3.921 11 C -0.249 4.249 12 C -0.079 4.079 13 C -0.253 4.253 14 C 0.120 3.880 15 O -0.119 6.119 16 C -0.464 4.464 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.208 4.208 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.137 -21.104 4.800 21.869 hybrid contribution -0.099 -0.280 -0.309 0.429 sum -3.236 -21.385 4.491 22.089 Atomic orbital electron populations 1.21813 0.95738 1.01327 1.02255 1.21585 0.96219 0.96088 1.01754 1.20938 0.92572 0.95982 1.00175 0.90194 1.22008 1.01229 1.02394 0.95650 1.21769 0.98020 0.93569 1.04135 1.20856 0.81912 0.91931 0.76099 1.90739 1.54184 1.46201 1.47130 1.43469 1.08243 1.06964 1.73055 1.17192 0.94184 0.83201 0.97480 1.20353 0.98158 0.97097 1.09308 1.20560 0.98309 0.91979 0.97082 1.21297 0.96891 1.00820 1.06256 1.18885 0.89643 0.88167 0.91335 1.83589 1.41071 1.18278 1.68920 1.20790 1.06899 0.82969 1.35742 0.87531 1.24452 0.99342 0.93945 0.96162 1.69646 1.39060 1.01577 1.41523 0.86195 0.82563 0.79374 0.78925 1.19806 1.20819 1.18288 1.20174 1.03191 0.90109 1.07373 0.92343 0.92647 0.92982 0.92081 0.92037 0.90493 0.92686 0.93505 0.88897 0.88864 0.75954 0.87234 0.86781 0.84853 0.91069 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -0.90 5.40 -26.73 -0.14 -1.05 16 3 C -0.08 -0.77 2.04 -90.62 -0.18 -0.96 16 4 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 5 C -0.16 -1.73 8.69 37.16 0.32 -1.41 16 6 C -0.13 -1.22 5.18 -27.88 -0.14 -1.37 16 7 C 0.50 7.02 7.39 -10.99 -0.08 6.94 16 8 O -0.51 -9.42 11.41 5.56 0.06 -9.35 16 9 N -0.67 -8.99 5.34 -9.88 -0.05 -9.04 16 10 C 0.17 3.08 6.30 -83.72 -0.53 2.55 16 11 C -0.23 -3.77 9.96 -39.34 -0.39 -4.16 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.23 -5.13 9.17 -39.36 -0.36 -5.50 16 14 C 0.17 4.20 6.64 -39.14 -0.26 3.94 16 15 O -0.21 -5.93 8.58 0.03 0.00 -5.93 16 16 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 17 H 0.11 3.11 5.43 -52.49 -0.29 2.83 16 18 C 0.06 1.85 5.49 -17.51 -0.10 1.75 16 19 N -0.88 -25.86 13.96 55.48 0.77 -25.09 16 20 Si 0.90 22.52 28.62 -169.99 -4.86 17.65 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.19 -4.10 8.63 -39.21 -0.34 -4.44 16 25 H 0.06 0.46 6.57 -51.92 -0.34 0.12 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.11 5.95 -51.92 -0.31 0.80 16 31 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 3.70 8.82 -40.82 -0.36 3.34 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 39 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.13 3.07 6.24 -52.48 -0.33 2.74 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -32.53 328.34 -6.68 -39.21 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.61 Total: 4.55 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.94 Total: -16.95 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.72 Total: -34.13 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.06 Total: -15.28 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.86 Total: 17.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.53 -6.68 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.348 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds