Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 H 1.08998 * 109.47322 * 305.00004 * 3 2 1 5 5 C 1.52996 * 109.47131 * 65.00034 * 3 2 1 6 6 C 1.53005 * 109.46948 * 184.99954 * 3 2 1 7 7 C 1.50695 * 109.47168 * 174.99844 * 6 3 2 8 8 O 1.21282 * 119.99947 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00110 * 180.02562 * 7 6 3 10 10 C 1.39913 * 119.99871 * 184.51663 * 9 7 6 11 11 C 1.38972 * 120.03294 * 144.90885 * 10 9 7 12 12 C 1.38159 * 120.06260 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.14365 * 0.02562 * 12 11 10 14 14 C 1.38905 * 120.07020 * 0.02562 * 13 12 11 15 15 O 1.35754 * 120.03686 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99437 * 5.28983 * 15 14 13 17 17 H 1.07999 * 120.00473 * 354.96290 * 16 15 14 18 18 C 1.38655 * 119.99509 * 174.96441 * 16 15 14 19 19 N 1.31558 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00112 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47360 * 90.00455 * 20 18 16 22 22 H 1.48503 * 109.47035 * 209.99935 * 20 18 16 23 23 H 1.48496 * 109.47079 * 329.99993 * 20 18 16 24 24 C 1.38714 * 120.04042 * 324.88420 * 10 9 7 25 25 H 1.09008 * 109.46749 * 300.00093 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99685 * 1 2 3 27 27 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46929 * 240.00115 * 2 1 3 29 29 H 1.08995 * 109.47016 * 119.99836 * 2 1 3 30 30 H 1.09008 * 109.46750 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.47387 * 299.99513 * 5 3 2 32 32 H 1.09002 * 109.46861 * 60.00274 * 5 3 2 33 33 H 1.09007 * 109.46810 * 54.99956 * 6 3 2 34 34 H 1.08997 * 109.47215 * 295.00642 * 6 3 2 35 35 H 0.96994 * 119.99477 * 4.51030 * 9 7 6 36 36 H 1.07996 * 119.96400 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.92869 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.96543 * 179.97438 * 13 12 11 39 39 H 0.96999 * 120.00336 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.06299 * 359.75071 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.0570 2.8634 -0.2493 8 8 3.2660 3.7827 -0.2384 9 7 5.3761 3.1108 -0.3729 10 6 5.8415 4.4301 -0.3926 11 6 7.0634 4.7454 0.1896 12 6 7.5239 6.0478 0.1701 13 6 6.7715 7.0408 -0.4273 14 6 5.5489 6.7323 -1.0100 15 8 4.8105 7.7084 -1.5972 16 6 5.3685 8.9332 -1.6780 17 1 6.3249 9.1226 -1.2134 18 6 4.7144 9.9496 -2.3574 19 7 5.2590 11.1445 -2.4366 20 14 3.0604 9.6219 -3.1614 21 1 1.9731 9.9082 -2.1915 22 1 2.9060 10.4976 -4.3507 23 1 2.9874 8.1994 -3.5813 24 6 5.0842 5.4248 -0.9935 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.9990 3.1542 1.3074 31 1 0.5490 2.1253 1.3969 32 1 2.0700 1.5875 2.1491 33 1 3.8571 0.8800 -1.0114 34 1 4.0030 0.9836 0.7596 35 1 6.0027 2.3742 -0.4482 36 1 7.6535 3.9714 0.6577 37 1 8.4740 6.2903 0.6229 38 1 7.1340 8.0581 -0.4405 39 1 4.8013 11.8557 -2.9116 40 1 4.1363 5.1815 -1.4506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167399950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = -73.787956 kcal Electronic energy + Delta-G solvation = -21023.936721 eV Core-core repulsion = 17803.118694 eV Total energy + Delta-G solvation = -3220.818028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64122 -40.52034 -38.53671 -37.17970 -35.50449 -34.46004 -31.98370 -31.18157 -30.21751 -28.37652 -27.23997 -25.18505 -23.84054 -22.88024 -21.56630 -20.70297 -19.87074 -19.40488 -18.02362 -17.22542 -16.92828 -16.70140 -16.18647 -16.00637 -15.70471 -15.61439 -15.21596 -14.95843 -14.38404 -14.31541 -14.21921 -14.03831 -13.49741 -13.28850 -12.98977 -12.81222 -12.79650 -12.67648 -12.50280 -12.18163 -12.06888 -11.75081 -11.56974 -11.44354 -11.38831 -11.24506 -10.89115 -10.58161 -9.39911 -8.92549 -8.53401 -6.25344 0.39654 0.63662 1.25609 1.29962 1.46634 1.67386 2.08737 2.24642 2.74639 2.99760 3.18037 3.72927 3.85229 4.00613 4.10419 4.26808 4.34763 4.38602 4.47136 4.61609 4.64559 4.68126 4.71063 4.74637 4.84568 4.89597 4.97473 5.14715 5.19177 5.25497 5.32830 5.34663 5.39214 5.44531 5.54358 5.60573 5.66960 5.77327 5.90212 6.22130 6.53536 6.81561 7.26813 7.58118 8.58218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.004281 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.511929 B = 6538.334813 C = 7831.754326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.079 4.079 4 H 0.051 0.949 5 C -0.154 4.154 6 C -0.122 4.122 7 C 0.498 3.502 8 O -0.561 6.561 9 N -0.657 5.657 10 C 0.182 3.818 11 C -0.196 4.196 12 C -0.053 4.053 13 C -0.251 4.251 14 C 0.133 3.867 15 O -0.250 6.250 16 C -0.398 4.398 17 H 0.088 0.912 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.260 1.260 23 H -0.272 1.272 24 C -0.205 4.205 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.432 0.568 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.285 0.715 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -26.446 6.067 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.098 4.098 4 H 0.069 0.931 5 C -0.211 4.211 6 C -0.162 4.162 7 C 0.288 3.712 8 O -0.438 6.438 9 N -0.305 5.305 10 C 0.087 3.913 11 C -0.216 4.216 12 C -0.072 4.072 13 C -0.271 4.271 14 C 0.083 3.917 15 O -0.158 6.158 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.786 3.214 21 H -0.194 1.194 22 H -0.184 1.184 23 H -0.197 1.197 24 C -0.226 4.226 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.272 0.728 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.962 -25.663 5.914 26.408 hybrid contribution -0.328 0.805 -0.475 0.991 sum -2.290 -24.857 5.439 25.548 Atomic orbital electron populations 1.21844 0.96218 1.01976 1.01467 1.21536 0.95791 0.94197 1.03295 1.20935 0.93465 0.97239 0.98195 0.93079 1.21964 1.01318 1.00498 0.97318 1.21839 0.97002 0.90153 1.07178 1.21895 0.81387 0.93549 0.74386 1.90753 1.55525 1.48346 1.49159 1.43440 1.08928 1.05770 1.72347 1.17359 0.93944 0.84445 0.95521 1.20950 0.97044 0.97597 1.05996 1.21028 0.99076 0.91631 0.95444 1.21347 0.96916 1.01237 1.07591 1.19409 0.91021 0.88557 0.92694 1.83535 1.42367 1.18288 1.71569 1.20774 1.06553 0.84186 1.35959 0.89489 1.25170 1.02562 0.93775 0.96889 1.69708 1.40699 1.02342 1.43282 0.85329 0.78709 0.78555 0.78768 1.19355 1.18417 1.19735 1.20237 1.03249 0.90360 1.08796 0.92965 0.93740 0.91565 0.90577 0.90302 0.94336 0.92735 0.91609 0.85623 0.85438 0.72840 0.81640 0.82737 0.86962 0.90483 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.67 71.98 0.70 -1.41 16 2 C -0.11 -1.31 5.40 30.60 0.17 -1.14 16 3 C -0.08 -1.42 2.04 -10.79 -0.02 -1.44 16 4 H 0.05 1.21 7.95 -2.39 -0.02 1.19 16 5 C -0.15 -3.29 8.69 71.98 0.63 -2.66 16 6 C -0.12 -1.73 5.18 29.85 0.15 -1.58 16 7 C 0.50 12.79 7.39 87.65 0.65 13.44 16 8 O -0.56 -21.13 11.41 -3.04 -0.03 -21.16 16 9 N -0.66 -15.15 5.34 -303.56 -1.62 -16.77 16 10 C 0.18 6.05 6.30 38.14 0.24 6.29 16 11 C -0.20 -5.53 9.96 22.43 0.22 -5.31 16 12 C -0.05 -1.77 10.03 22.23 0.22 -1.55 16 13 C -0.25 -11.34 9.17 22.41 0.21 -11.14 16 14 C 0.13 6.78 6.64 22.56 0.15 6.93 16 15 O -0.25 -14.82 8.58 -22.82 -0.20 -15.01 16 16 C -0.40 -24.64 9.95 67.92 0.68 -23.97 16 17 H 0.09 5.52 5.43 -2.91 -0.02 5.50 16 18 C 0.01 0.89 5.49 84.83 0.47 1.36 16 19 N -0.92 -56.42 13.96 21.61 0.30 -56.12 16 20 Si 0.96 48.56 28.62 68.60 1.96 50.52 16 21 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.27 -14.15 7.11 99.48 0.71 -13.44 16 24 C -0.20 -9.19 8.63 22.51 0.19 -8.99 16 25 H 0.05 0.75 6.57 -2.38 -0.02 0.73 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.04 1.13 5.95 -2.38 -0.01 1.11 16 31 H 0.05 1.12 6.56 -2.39 -0.02 1.11 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.43 5.42 8.82 -92.71 -0.82 4.61 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.11 5.49 5.63 -2.91 -0.02 5.47 16 39 H 0.29 16.04 8.31 -92.71 -0.77 15.26 16 40 H 0.11 5.46 6.24 -2.91 -0.02 5.44 16 Total: -1.00 -79.01 328.34 5.29 -73.72 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.23 Total: 16.00 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 4.64 Total: -31.17 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.32 Total: -72.89 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.23 Total: -36.17 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.96 Total: 50.52 kcal Total: -79.01 5.29 -73.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.071 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds