Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47398 * 2 1 4 4 H 1.09005 * 109.46679 * 54.99860 * 3 2 1 5 5 C 1.52997 * 109.46973 * 295.00280 * 3 2 1 6 6 C 1.52997 * 109.47313 * 174.99730 * 3 2 1 7 7 C 1.50701 * 109.47264 * 185.00295 * 6 3 2 8 8 O 1.21293 * 119.99832 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00050 * 180.02562 * 7 6 3 10 10 C 1.39930 * 119.99710 * 175.49060 * 9 7 6 11 11 C 1.38965 * 120.03584 * 214.84461 * 10 9 7 12 12 C 1.38155 * 120.07029 * 179.79139 * 11 10 9 13 13 C 1.38170 * 120.13685 * 0.46512 * 12 11 10 14 14 C 1.38914 * 120.06952 * 359.78685 * 13 12 11 15 15 O 1.35752 * 120.03311 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00038 * 5.36819 * 15 14 13 17 17 H 1.08001 * 120.00033 * 354.96387 * 16 15 14 18 18 C 1.38649 * 120.00142 * 174.96283 * 16 15 14 19 19 N 1.31557 * 119.99986 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47457 * 89.99589 * 20 18 16 22 22 H 1.48496 * 109.47071 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47065 * 329.99610 * 20 18 16 24 24 C 1.38711 * 120.03817 * 35.12512 * 10 9 7 25 25 H 1.09004 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47059 * 300.00029 * 1 2 3 27 27 H 1.09005 * 109.46956 * 59.99826 * 1 2 3 28 28 H 1.09002 * 109.47647 * 240.00152 * 2 1 3 29 29 H 1.09002 * 109.47366 * 119.99860 * 2 1 3 30 30 H 1.08997 * 109.47342 * 299.99425 * 5 3 2 31 31 H 1.08996 * 109.47602 * 59.99688 * 5 3 2 32 32 H 1.09004 * 109.46983 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47253 * 65.00425 * 6 3 2 34 34 H 1.09001 * 109.47334 * 305.00242 * 6 3 2 35 35 H 0.96991 * 120.00365 * 355.21342 * 9 7 6 36 36 H 1.08002 * 119.96553 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.93367 * 180.23678 * 12 11 10 38 38 H 1.07992 * 119.96646 * 179.77029 * 13 12 11 39 39 H 0.96999 * 119.99448 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.06698 * 359.94857 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0570 2.8633 0.2494 8 8 3.2660 3.7827 0.2384 9 7 5.3761 3.1107 0.3721 10 6 5.8416 4.4302 0.3918 11 6 7.0653 4.7449 -0.1867 12 6 7.5235 6.0482 -0.1713 13 6 6.7716 7.0409 0.4273 14 6 5.5500 6.7318 1.0119 15 8 4.8121 7.7076 1.6004 16 6 5.2667 8.9718 1.4862 17 1 6.2203 9.1624 1.0163 18 6 4.5101 10.0272 1.9720 19 7 4.9539 11.2606 1.8610 20 14 2.8610 9.6976 2.7853 21 1 3.0597 9.4942 4.2428 22 1 1.9601 10.8574 2.5655 23 1 2.2523 8.4789 2.1940 24 6 5.0847 5.4245 0.9940 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5876 -2.1491 31 1 0.5490 2.1253 -1.3969 32 1 1.9982 3.1543 -1.3071 33 1 4.0030 0.9836 -0.7596 34 1 3.8571 0.8800 1.0114 35 1 6.0025 2.3743 0.4507 36 1 7.6570 3.9705 -0.6521 37 1 8.4730 6.2909 -0.6249 38 1 7.1341 8.0580 0.4410 39 1 4.4243 11.9990 2.2006 40 1 4.1350 5.1818 1.4476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167400055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = -52.470412 kcal Electronic energy + Delta-G solvation = -21035.529257 eV Core-core repulsion = 17815.635627 eV Total energy + Delta-G solvation = -3219.893629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35251 -38.86798 -37.10845 -36.13469 -34.12808 -32.34239 -31.09980 -29.63653 -28.85939 -27.36427 -25.20368 -24.31321 -22.43660 -21.29942 -20.38001 -19.83513 -18.05602 -17.65397 -16.81319 -15.87352 -15.49436 -15.22491 -15.05661 -14.56643 -14.42275 -14.00197 -13.84298 -13.60481 -13.19655 -12.93965 -12.64070 -12.40059 -12.26249 -12.10026 -11.97543 -11.62358 -11.49051 -11.19205 -11.01776 -10.90913 -10.82363 -10.75049 -10.71902 -10.17410 -9.81766 -9.57787 -9.19214 -8.83236 -7.79124 -7.29520 -6.38052 -4.04598 1.94289 2.24575 2.82053 3.19863 3.28397 3.30205 3.48518 4.29331 4.47613 4.56812 4.58389 4.70486 4.89520 5.04840 5.07548 5.16640 5.26112 5.40176 5.49980 5.52421 5.58180 5.60626 5.73511 5.77993 5.89488 5.90382 6.05580 6.08839 6.13873 6.27353 6.29328 6.43192 6.57007 6.82881 6.95591 7.13424 7.34603 7.61091 7.64518 7.83880 8.06581 8.33450 8.97614 9.60892 10.69431 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.004344 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.745970 B = 6444.359101 C = 7769.381548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.080 0.920 5 C -0.156 4.156 6 C -0.135 4.135 7 C 0.504 3.496 8 O -0.508 6.508 9 N -0.672 5.672 10 C 0.173 3.827 11 C -0.228 4.228 12 C -0.061 4.061 13 C -0.233 4.233 14 C 0.173 3.827 15 O -0.214 6.214 16 C -0.388 4.388 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.257 1.257 24 C -0.188 4.188 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -22.168 -4.009 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.097 4.097 4 H 0.098 0.902 5 C -0.213 4.213 6 C -0.175 4.175 7 C 0.292 3.708 8 O -0.382 6.382 9 N -0.318 5.318 10 C 0.080 3.920 11 C -0.249 4.249 12 C -0.079 4.079 13 C -0.253 4.253 14 C 0.120 3.880 15 O -0.119 6.119 16 C -0.464 4.464 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.728 3.272 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.209 4.209 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.642 -21.304 -3.862 21.812 hybrid contribution -0.099 -0.275 0.310 0.426 sum -2.741 -21.579 -3.552 22.040 Atomic orbital electron populations 1.21811 0.95738 1.01324 1.02260 1.21584 0.96219 0.96088 1.01748 1.20937 0.92572 0.95979 1.00180 0.90198 1.22007 1.01237 1.02402 0.95645 1.21768 0.98020 0.93564 1.04125 1.20861 0.81916 0.91937 0.76122 1.90748 1.54180 1.46184 1.47090 1.43471 1.08249 1.06958 1.73073 1.17192 0.94095 0.83193 0.97559 1.20350 0.98097 0.97065 1.09382 1.20561 0.98326 0.91948 0.97101 1.21302 0.96644 1.00838 1.06468 1.18884 0.89998 0.88558 0.90596 1.83583 1.47425 1.15819 1.65044 1.20785 1.06532 0.78430 1.40650 0.87539 1.24449 0.99193 0.93621 0.96625 1.69648 1.39010 0.98221 1.44930 0.86211 0.82384 0.78667 0.79939 1.19877 1.20780 1.18116 1.20172 1.02849 0.90425 1.07443 0.92984 0.92650 0.92338 0.92037 0.92087 0.93497 0.92689 0.90485 0.88863 0.88907 0.75954 0.87232 0.86777 0.84854 0.91076 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.05 16 3 C -0.08 -0.78 2.04 -90.62 -0.18 -0.96 16 4 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 5 C -0.16 -1.75 8.69 37.16 0.32 -1.43 16 6 C -0.13 -1.23 5.18 -27.88 -0.14 -1.37 16 7 C 0.50 7.04 7.39 -10.99 -0.08 6.96 16 8 O -0.51 -9.47 11.41 5.55 0.06 -9.41 16 9 N -0.67 -8.99 5.34 -9.88 -0.05 -9.04 16 10 C 0.17 3.08 6.30 -83.72 -0.53 2.55 16 11 C -0.23 -3.77 9.96 -39.34 -0.39 -4.16 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.23 -5.13 9.17 -39.36 -0.36 -5.49 16 14 C 0.17 4.20 6.64 -39.13 -0.26 3.94 16 15 O -0.21 -5.93 8.58 0.04 0.00 -5.93 16 16 C -0.39 -11.26 9.95 30.88 0.31 -10.95 16 17 H 0.11 3.12 5.43 -52.49 -0.29 2.83 16 18 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 19 N -0.88 -25.91 13.96 55.48 0.77 -25.14 16 20 Si 0.90 22.53 28.62 -169.99 -4.86 17.67 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.19 -4.11 8.64 -39.21 -0.34 -4.45 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.41 3.69 8.82 -40.82 -0.36 3.33 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 39 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.13 3.07 6.23 -52.48 -0.33 2.75 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -32.63 328.33 -6.68 -39.31 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.61 Total: 4.57 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.94 Total: -16.98 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.72 Total: -34.18 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.06 Total: -15.34 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.86 Total: 17.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.63 -6.68 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167400055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.161 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds