Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47398 * 2 1 4 4 H 1.09005 * 109.46679 * 54.99860 * 3 2 1 5 5 C 1.52997 * 109.46973 * 295.00280 * 3 2 1 6 6 C 1.52997 * 109.47313 * 174.99730 * 3 2 1 7 7 C 1.50701 * 109.47264 * 185.00295 * 6 3 2 8 8 O 1.21293 * 119.99832 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00050 * 180.02562 * 7 6 3 10 10 C 1.39930 * 119.99710 * 175.49060 * 9 7 6 11 11 C 1.38965 * 120.03584 * 214.84461 * 10 9 7 12 12 C 1.38155 * 120.07029 * 179.79139 * 11 10 9 13 13 C 1.38170 * 120.13685 * 0.46512 * 12 11 10 14 14 C 1.38914 * 120.06952 * 359.78685 * 13 12 11 15 15 O 1.35752 * 120.03311 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00038 * 5.36819 * 15 14 13 17 17 H 1.08001 * 120.00033 * 354.96387 * 16 15 14 18 18 C 1.38649 * 120.00142 * 174.96283 * 16 15 14 19 19 N 1.31557 * 119.99986 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47457 * 89.99589 * 20 18 16 22 22 H 1.48496 * 109.47071 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47065 * 329.99610 * 20 18 16 24 24 C 1.38711 * 120.03817 * 35.12512 * 10 9 7 25 25 H 1.09004 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47059 * 300.00029 * 1 2 3 27 27 H 1.09005 * 109.46956 * 59.99826 * 1 2 3 28 28 H 1.09002 * 109.47647 * 240.00152 * 2 1 3 29 29 H 1.09002 * 109.47366 * 119.99860 * 2 1 3 30 30 H 1.08997 * 109.47342 * 299.99425 * 5 3 2 31 31 H 1.08996 * 109.47602 * 59.99688 * 5 3 2 32 32 H 1.09004 * 109.46983 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47253 * 65.00425 * 6 3 2 34 34 H 1.09001 * 109.47334 * 305.00242 * 6 3 2 35 35 H 0.96991 * 120.00365 * 355.21342 * 9 7 6 36 36 H 1.08002 * 119.96553 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.93367 * 180.23678 * 12 11 10 38 38 H 1.07992 * 119.96646 * 179.77029 * 13 12 11 39 39 H 0.96999 * 119.99448 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.06698 * 359.94857 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0570 2.8633 0.2494 8 8 3.2660 3.7827 0.2384 9 7 5.3761 3.1107 0.3721 10 6 5.8416 4.4302 0.3918 11 6 7.0653 4.7449 -0.1867 12 6 7.5235 6.0482 -0.1713 13 6 6.7716 7.0409 0.4273 14 6 5.5500 6.7318 1.0119 15 8 4.8121 7.7076 1.6004 16 6 5.2667 8.9718 1.4862 17 1 6.2203 9.1624 1.0163 18 6 4.5101 10.0272 1.9720 19 7 4.9539 11.2606 1.8610 20 14 2.8610 9.6976 2.7853 21 1 3.0597 9.4942 4.2428 22 1 1.9601 10.8574 2.5655 23 1 2.2523 8.4789 2.1940 24 6 5.0847 5.4245 0.9940 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5876 -2.1491 31 1 0.5490 2.1253 -1.3969 32 1 1.9982 3.1543 -1.3071 33 1 4.0030 0.9836 -0.7596 34 1 3.8571 0.8800 1.0114 35 1 6.0025 2.3743 0.4507 36 1 7.6570 3.9705 -0.6521 37 1 8.4730 6.2909 -0.6249 38 1 7.1341 8.0580 0.4410 39 1 4.4243 11.9990 2.2006 40 1 4.1350 5.1818 1.4476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167400055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = -73.830419 kcal Electronic energy + Delta-G solvation = -21036.455496 eV Core-core repulsion = 17815.635627 eV Total energy + Delta-G solvation = -3220.819869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64138 -40.52014 -38.53727 -37.18146 -35.50534 -34.46085 -31.98484 -31.18248 -30.21921 -28.37895 -27.24088 -25.18641 -23.84147 -22.88024 -21.56757 -20.70343 -19.86994 -19.40552 -18.02443 -17.22694 -16.92593 -16.70346 -16.18944 -16.03022 -15.71944 -15.57389 -15.21627 -14.95994 -14.38764 -14.32207 -14.20910 -14.04077 -13.50002 -13.27890 -12.99414 -12.83193 -12.79756 -12.66869 -12.52109 -12.18347 -12.06388 -11.74997 -11.56543 -11.44427 -11.38611 -11.25526 -10.88174 -10.58365 -9.40089 -8.92771 -8.53482 -6.25426 0.39620 0.63484 1.25376 1.29453 1.47233 1.67148 2.08308 2.24732 2.73367 3.06351 3.12877 3.73041 3.85149 4.00457 4.10437 4.26684 4.34710 4.38539 4.47078 4.61467 4.64517 4.68068 4.71011 4.74476 4.84459 4.89451 4.97419 5.14528 5.19025 5.25382 5.32752 5.34542 5.39175 5.44435 5.54194 5.60444 5.66813 5.77259 5.90152 6.22049 6.53603 6.81569 7.26937 7.58085 8.58146 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.004344 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.745970 B = 6444.359101 C = 7769.381548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.079 4.079 4 H 0.051 0.949 5 C -0.154 4.154 6 C -0.122 4.122 7 C 0.498 3.502 8 O -0.561 6.561 9 N -0.657 5.657 10 C 0.182 3.818 11 C -0.195 4.195 12 C -0.053 4.053 13 C -0.251 4.251 14 C 0.133 3.867 15 O -0.250 6.250 16 C -0.398 4.398 17 H 0.088 0.912 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.262 1.262 22 H -0.262 1.262 23 H -0.276 1.276 24 C -0.205 4.205 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.432 0.568 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.285 0.715 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -26.671 -4.996 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.098 4.098 4 H 0.069 0.931 5 C -0.211 4.211 6 C -0.161 4.161 7 C 0.288 3.712 8 O -0.438 6.438 9 N -0.305 5.305 10 C 0.087 3.913 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.271 4.271 14 C 0.083 3.917 15 O -0.158 6.158 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.186 1.186 23 H -0.201 1.201 24 C -0.227 4.227 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.272 0.728 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.389 -25.885 -4.855 26.373 hybrid contribution -0.342 0.812 0.456 0.992 sum -1.731 -25.073 -4.399 25.514 Atomic orbital electron populations 1.21843 0.96231 1.01980 1.01456 1.21535 0.95779 0.94174 1.03313 1.20935 0.93494 0.97248 0.98159 0.93083 1.21964 1.01314 1.00474 0.97362 1.21838 0.96974 0.90136 1.07196 1.21904 0.81396 0.93553 0.74386 1.90762 1.55551 1.48359 1.49172 1.43438 1.08918 1.05769 1.72338 1.17359 0.93902 0.84444 0.95559 1.20948 0.96985 0.97573 1.06042 1.21029 0.99100 0.91608 0.95450 1.21352 0.96678 1.01255 1.07782 1.19411 0.91141 0.88856 0.92292 1.83529 1.48902 1.15602 1.67727 1.20772 1.06159 0.79709 1.40832 0.89494 1.25170 1.02358 0.93439 0.97441 1.69711 1.40581 0.98888 1.46856 0.85332 0.78671 0.78100 0.79293 1.18700 1.18632 1.20145 1.20237 1.02941 0.90675 1.08822 0.91547 0.93739 0.92997 0.90302 0.90534 0.91593 0.92756 0.94398 0.85443 0.85563 0.72819 0.81626 0.82726 0.86961 0.90494 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.67 71.98 0.70 -1.43 16 2 C -0.11 -1.31 5.40 30.59 0.17 -1.15 16 3 C -0.08 -1.43 2.04 -10.80 -0.02 -1.45 16 4 H 0.05 1.22 7.95 -2.38 -0.02 1.20 16 5 C -0.15 -3.34 8.69 71.98 0.63 -2.71 16 6 C -0.12 -1.74 5.18 29.85 0.15 -1.58 16 7 C 0.50 12.85 7.39 87.66 0.65 13.50 16 8 O -0.56 -21.35 11.41 -3.07 -0.03 -21.38 16 9 N -0.66 -15.14 5.34 -303.55 -1.62 -16.76 16 10 C 0.18 6.05 6.30 38.14 0.24 6.29 16 11 C -0.20 -5.52 9.96 22.42 0.22 -5.30 16 12 C -0.05 -1.77 10.03 22.23 0.22 -1.55 16 13 C -0.25 -11.33 9.17 22.42 0.21 -11.13 16 14 C 0.13 6.78 6.64 22.56 0.15 6.93 16 15 O -0.25 -14.83 8.58 -22.77 -0.20 -15.02 16 16 C -0.40 -24.69 9.95 67.92 0.68 -24.01 16 17 H 0.09 5.52 5.43 -2.91 -0.02 5.51 16 18 C 0.01 0.88 5.49 84.83 0.47 1.35 16 19 N -0.92 -56.54 13.96 21.61 0.30 -56.24 16 20 Si 0.96 48.68 28.62 68.60 1.96 50.65 16 21 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 24 C -0.21 -9.21 8.64 22.51 0.19 -9.01 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.75 6.57 -2.38 -0.02 0.74 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.14 6.56 -2.39 -0.02 1.12 16 32 H 0.04 1.13 5.95 -2.39 -0.01 1.11 16 33 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.43 5.39 8.82 -92.71 -0.82 4.57 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.11 5.49 5.63 -2.91 -0.02 5.48 16 39 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 40 H 0.11 5.47 6.23 -2.91 -0.02 5.45 16 Total: -1.00 -79.41 328.33 5.29 -74.11 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.23 Total: 15.91 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.64 Total: -31.27 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.32 Total: -73.00 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.23 Total: -36.40 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 1.96 Total: 50.65 kcal Total: -79.41 5.29 -74.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167400055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.283 kcal (2) G-P(sol) polarization free energy of solvation -79.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds