Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00472 * 2 1 4 4 C 1.53000 * 109.47293 * 59.99426 * 3 2 1 5 5 C 1.53009 * 109.47095 * 299.99855 * 3 2 1 6 6 C 1.52995 * 109.47352 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46874 * 65.00271 * 6 3 2 8 8 C 1.34777 * 119.99799 * 180.02562 * 7 6 3 9 9 O 1.21550 * 120.00379 * 359.97438 * 8 7 6 10 10 C 1.47885 * 120.00185 * 179.97438 * 8 7 6 11 11 C 1.39929 * 120.02226 * 359.71679 * 10 8 7 12 12 C 1.38331 * 120.35603 * 179.74525 * 11 10 8 13 13 C 1.37746 * 120.41008 * 0.56083 * 12 11 10 14 14 C 1.40750 * 120.04589 * 359.69665 * 13 12 11 15 15 C 1.41432 * 120.18217 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00117 * 150.17347 * 15 14 13 17 17 C 1.39936 * 119.99879 * 330.17990 * 15 14 13 18 18 N 1.30827 * 120.00030 * 161.73125 * 17 15 14 19 19 Si 1.86798 * 119.99970 * 341.72880 * 17 15 14 20 20 H 1.48505 * 109.46981 * 95.41600 * 19 17 15 21 21 H 1.48508 * 109.46888 * 215.41234 * 19 17 15 22 22 H 1.48497 * 109.47264 * 335.41186 * 19 17 15 23 23 C 1.38987 * 120.02975 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46669 * 60.00059 * 1 2 3 25 25 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47020 * 300.00569 * 1 2 3 27 27 H 1.08997 * 109.47386 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.47608 * 300.00808 * 4 3 2 29 29 H 1.09006 * 109.46643 * 60.00042 * 4 3 2 30 30 H 1.08993 * 109.46873 * 299.99984 * 5 3 2 31 31 H 1.08997 * 109.46583 * 59.99941 * 5 3 2 32 32 H 1.08997 * 109.47203 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47399 * 184.99743 * 6 3 2 34 34 H 1.08995 * 109.47372 * 304.99957 * 6 3 2 35 35 H 0.96997 * 120.00091 * 359.97438 * 7 6 3 36 36 H 1.08000 * 119.81708 * 0.02562 * 11 10 8 37 37 H 1.07999 * 119.78890 * 180.27930 * 12 11 10 38 38 H 1.08009 * 119.97828 * 179.72233 * 13 12 11 39 39 H 0.96999 * 120.00420 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.20348 * 359.94869 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 1.5589 2.0647 1.2492 5 6 1.5590 2.0647 -1.2493 6 6 3.5355 1.1845 0.0006 7 7 3.9767 0.5638 -1.2510 8 6 5.2894 0.3549 -1.4734 9 8 6.1074 0.6818 -0.6358 10 6 5.7348 -0.2722 -2.7365 11 6 4.7933 -0.6542 -3.6986 12 6 5.2025 -1.2364 -4.8847 13 6 6.5402 -1.4575 -5.1278 14 6 7.5016 -1.0849 -4.1696 15 6 8.8759 -1.3100 -4.4164 16 1 9.6166 -0.6523 -3.9863 17 6 9.2758 -2.3850 -5.2181 18 7 10.4748 -2.4003 -5.7412 19 14 8.0977 -3.7982 -5.5412 20 1 7.3936 -3.5711 -6.8288 21 1 8.8592 -5.0713 -5.6112 22 1 7.1040 -3.8758 -4.4404 23 6 7.0885 -0.4874 -2.9667 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.0019 3.0606 1.2489 28 1 0.4723 2.1508 1.2492 29 1 1.8804 1.5238 2.1392 30 1 1.8806 1.5237 -2.1392 31 1 0.4724 2.1508 -1.2493 32 1 2.0020 3.0605 -1.2491 33 1 3.9786 2.1763 0.0902 34 1 3.8508 0.5684 0.8427 35 1 3.3240 0.3026 -1.9192 36 1 3.7417 -0.4893 -3.5159 37 1 4.4683 -1.5236 -5.6228 38 1 6.8517 -1.9167 -6.0544 39 1 10.7520 -3.1453 -6.2972 40 1 7.8185 -0.1973 -2.2255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174164336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -70.368072 kcal Electronic energy + Delta-G solvation = -21242.814034 eV Core-core repulsion = 18022.144303 eV Total energy + Delta-G solvation = -3220.669730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87916 -38.80654 -37.23049 -34.74414 -33.67703 -32.39161 -30.57933 -29.98337 -27.84657 -27.55852 -25.98661 -24.99361 -22.67398 -20.69571 -20.26320 -19.91483 -18.02280 -16.84768 -16.37898 -15.90462 -15.73971 -15.26321 -14.93240 -14.67745 -14.57565 -13.81678 -13.70619 -13.40372 -13.19189 -12.75962 -12.71999 -12.68531 -12.42685 -12.26665 -11.97455 -11.77909 -11.61665 -11.54865 -11.02305 -10.79091 -10.75708 -10.51975 -9.99082 -9.85661 -9.69676 -9.40152 -9.11436 -8.77422 -7.84073 -7.73215 -6.98650 -4.53263 1.95249 2.53964 3.07154 3.19272 3.28313 3.44103 3.57738 3.67452 3.95379 4.42407 4.51474 4.61379 4.67668 5.04170 5.08641 5.23313 5.27854 5.33395 5.40498 5.44359 5.46026 5.62772 5.64115 5.77226 5.81559 5.88893 5.99506 6.05814 6.41188 6.68233 6.69308 6.74699 6.97098 7.00611 7.23698 7.43647 7.52456 7.77400 7.84210 8.05326 8.30275 8.55533 8.72035 8.76925 10.03598 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003833 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.561282 B = 7302.660593 C = 7737.722113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.180 4.180 6 C 0.137 3.863 7 N -0.727 5.727 8 C 0.563 3.437 9 O -0.550 6.550 10 C -0.107 4.107 11 C -0.215 4.215 12 C -0.083 4.083 13 C -0.222 4.222 14 C 0.082 3.918 15 C -0.443 4.443 16 H 0.094 0.906 17 C 0.084 3.916 18 N -0.805 5.805 19 Si 0.910 3.090 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.243 1.243 23 C -0.136 4.136 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.286 0.714 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.863 5.117 7.236 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.059 3.941 4 C -0.233 4.233 5 C -0.238 4.238 6 C 0.013 3.987 7 N -0.382 5.382 8 C 0.353 3.647 9 O -0.429 6.429 10 C -0.110 4.110 11 C -0.235 4.235 12 C -0.102 4.102 13 C -0.242 4.242 14 C 0.079 3.921 15 C -0.471 4.471 16 H 0.112 0.888 17 C -0.136 4.136 18 N -0.429 5.429 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.167 1.167 23 C -0.156 4.156 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.240 0.760 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.912 5.103 7.717 20.160 hybrid contribution -0.983 -0.572 -0.625 1.297 sum -18.895 4.532 7.092 20.684 Atomic orbital electron populations 1.22804 0.81583 1.02734 1.00085 1.88055 1.19444 1.26775 1.94995 1.21777 0.93312 0.83914 0.95111 1.22347 1.01965 1.01129 0.97901 1.22435 1.01799 1.01361 0.98192 1.21241 0.90201 0.99095 0.88180 1.45885 1.08038 1.64036 1.20226 1.18778 0.81401 0.77447 0.87090 1.90693 1.53091 1.52110 1.47016 1.19429 0.94993 1.03268 0.93355 1.20392 0.96388 1.10384 0.96332 1.20505 0.95322 0.98347 0.95991 1.21174 0.93226 1.09955 0.99803 1.17697 0.93507 0.90848 0.90035 1.19517 0.91650 1.11121 1.24853 0.88845 1.26160 0.95741 0.99849 0.91802 1.69691 1.19588 1.30707 1.22867 0.86318 0.80536 0.78835 0.80643 1.19565 1.21665 1.16660 1.21277 0.93191 1.04169 0.96950 0.93748 0.89687 0.93855 0.91010 0.91740 0.91293 0.91359 0.91895 0.90961 0.90249 0.90883 0.76042 0.88676 0.88312 0.87902 0.90341 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 101.05 1.03 1.22 16 2 O -0.37 -4.24 10.29 -35.23 -0.36 -4.60 16 3 C 0.10 0.99 0.80 -90.62 -0.07 0.92 16 4 C -0.18 -1.37 8.25 37.16 0.31 -1.06 16 5 C -0.18 -1.58 8.02 37.16 0.30 -1.28 16 6 C 0.14 1.80 4.84 -4.04 -0.02 1.78 16 7 N -0.73 -11.41 5.14 -61.24 -0.31 -11.73 16 8 C 0.56 11.42 7.77 -12.31 -0.10 11.32 16 9 O -0.55 -12.71 16.33 5.32 0.09 -12.62 16 10 C -0.11 -2.35 5.87 -105.04 -0.62 -2.97 16 11 C -0.21 -4.27 9.55 -38.91 -0.37 -4.64 16 12 C -0.08 -1.73 10.01 -39.73 -0.40 -2.13 16 13 C -0.22 -5.24 7.17 -38.81 -0.28 -5.52 16 14 C 0.08 2.10 5.10 -106.87 -0.55 1.55 16 15 C -0.44 -12.05 9.57 -37.73 -0.36 -12.41 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 17 C 0.08 2.19 5.40 -17.34 -0.09 2.09 16 18 N -0.80 -21.39 13.93 55.55 0.77 -20.61 16 19 Si 0.91 20.59 24.52 -169.99 -4.17 16.42 16 20 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.24 -5.67 6.86 56.52 0.39 -5.28 16 23 C -0.14 -3.33 9.34 -38.44 -0.36 -3.69 16 24 H 0.04 0.31 6.42 -51.93 -0.33 -0.03 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.29 6.42 -51.93 -0.33 -0.05 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 31 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 5.69 5.01 -40.82 -0.20 5.49 16 36 H 0.10 1.55 6.38 -52.49 -0.33 1.22 16 37 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 2.40 4.72 -52.48 -0.25 2.15 16 39 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.12 2.88 7.64 -52.48 -0.40 2.48 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -30.00 322.30 -6.13 -36.13 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.43 Total: 6.96 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.57 Total: -14.81 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.46 Total: -32.34 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.28 Total: -17.22 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.00 -6.13 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174164336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.235 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds