Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00472 * 2 1 4 4 C 1.53000 * 109.47293 * 59.99426 * 3 2 1 5 5 C 1.53009 * 109.47095 * 299.99855 * 3 2 1 6 6 C 1.52995 * 109.47352 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46874 * 65.00271 * 6 3 2 8 8 C 1.34777 * 119.99799 * 180.02562 * 7 6 3 9 9 O 1.21550 * 120.00379 * 359.97438 * 8 7 6 10 10 C 1.47885 * 120.00185 * 179.97438 * 8 7 6 11 11 C 1.39929 * 120.02226 * 359.71679 * 10 8 7 12 12 C 1.38331 * 120.35603 * 179.74525 * 11 10 8 13 13 C 1.37746 * 120.41008 * 0.56083 * 12 11 10 14 14 C 1.40750 * 120.04589 * 359.69665 * 13 12 11 15 15 C 1.41432 * 120.18217 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00117 * 150.17347 * 15 14 13 17 17 C 1.39936 * 119.99879 * 330.17990 * 15 14 13 18 18 N 1.30827 * 120.00030 * 161.73125 * 17 15 14 19 19 Si 1.86798 * 119.99970 * 341.72880 * 17 15 14 20 20 H 1.48505 * 109.46981 * 95.41600 * 19 17 15 21 21 H 1.48508 * 109.46888 * 215.41234 * 19 17 15 22 22 H 1.48497 * 109.47264 * 335.41186 * 19 17 15 23 23 C 1.38987 * 120.02975 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46669 * 60.00059 * 1 2 3 25 25 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47020 * 300.00569 * 1 2 3 27 27 H 1.08997 * 109.47386 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.47608 * 300.00808 * 4 3 2 29 29 H 1.09006 * 109.46643 * 60.00042 * 4 3 2 30 30 H 1.08993 * 109.46873 * 299.99984 * 5 3 2 31 31 H 1.08997 * 109.46583 * 59.99941 * 5 3 2 32 32 H 1.08997 * 109.47203 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47399 * 184.99743 * 6 3 2 34 34 H 1.08995 * 109.47372 * 304.99957 * 6 3 2 35 35 H 0.96997 * 120.00091 * 359.97438 * 7 6 3 36 36 H 1.08000 * 119.81708 * 0.02562 * 11 10 8 37 37 H 1.07999 * 119.78890 * 180.27930 * 12 11 10 38 38 H 1.08009 * 119.97828 * 179.72233 * 13 12 11 39 39 H 0.96999 * 120.00420 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.20348 * 359.94869 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 1.5589 2.0647 1.2492 5 6 1.5590 2.0647 -1.2493 6 6 3.5355 1.1845 0.0006 7 7 3.9767 0.5638 -1.2510 8 6 5.2894 0.3549 -1.4734 9 8 6.1074 0.6818 -0.6358 10 6 5.7348 -0.2722 -2.7365 11 6 4.7933 -0.6542 -3.6986 12 6 5.2025 -1.2364 -4.8847 13 6 6.5402 -1.4575 -5.1278 14 6 7.5016 -1.0849 -4.1696 15 6 8.8759 -1.3100 -4.4164 16 1 9.6166 -0.6523 -3.9863 17 6 9.2758 -2.3850 -5.2181 18 7 10.4748 -2.4003 -5.7412 19 14 8.0977 -3.7982 -5.5412 20 1 7.3936 -3.5711 -6.8288 21 1 8.8592 -5.0713 -5.6112 22 1 7.1040 -3.8758 -4.4404 23 6 7.0885 -0.4874 -2.9667 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.0019 3.0606 1.2489 28 1 0.4723 2.1508 1.2492 29 1 1.8804 1.5238 2.1392 30 1 1.8806 1.5237 -2.1392 31 1 0.4724 2.1508 -1.2493 32 1 2.0020 3.0605 -1.2491 33 1 3.9786 2.1763 0.0902 34 1 3.8508 0.5684 0.8427 35 1 3.3240 0.3026 -1.9192 36 1 3.7417 -0.4893 -3.5159 37 1 4.4683 -1.5236 -5.6228 38 1 6.8517 -1.9167 -6.0544 39 1 10.7520 -3.1453 -6.2972 40 1 7.8185 -0.1973 -2.2255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174164336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -90.974820 kcal Electronic energy + Delta-G solvation = -21243.707609 eV Core-core repulsion = 18022.144303 eV Total energy + Delta-G solvation = -3221.563306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19476 -39.95722 -38.95052 -35.98151 -35.55259 -33.50357 -32.30663 -31.73605 -28.58687 -28.28731 -27.29641 -26.57165 -24.28707 -22.47453 -21.58783 -21.07057 -19.66059 -18.23245 -17.68081 -17.33677 -17.05714 -16.48099 -16.12212 -16.03083 -15.95638 -15.44607 -15.10946 -14.59087 -14.48159 -14.26943 -14.08331 -13.78519 -13.62760 -13.32288 -13.19669 -12.87081 -12.83021 -12.68157 -12.48774 -12.30988 -12.24374 -11.76886 -11.59706 -11.51572 -11.20471 -10.85830 -10.52179 -10.18932 -9.63482 -9.55680 -8.91967 -6.55879 0.17517 0.73667 1.25444 1.41708 1.48764 1.94687 2.12736 2.18515 2.64641 2.76736 3.45044 3.62537 3.86367 3.91329 3.96644 4.25586 4.40419 4.47701 4.54003 4.54701 4.57147 4.65762 4.69949 4.74152 4.86674 4.88479 4.91077 4.92814 5.00486 5.15189 5.19082 5.31460 5.40466 5.42243 5.64523 5.71096 5.83954 6.10068 6.28604 6.29511 6.55562 6.65654 6.73743 7.21875 8.17162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003833 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.561282 B = 7302.660593 C = 7737.722113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.401 6.401 3 C 0.103 3.897 4 C -0.173 4.173 5 C -0.180 4.180 6 C 0.130 3.870 7 N -0.704 5.704 8 C 0.560 3.440 9 O -0.587 6.587 10 C -0.113 4.113 11 C -0.183 4.183 12 C -0.081 4.081 13 C -0.225 4.225 14 C 0.067 3.933 15 C -0.489 4.489 16 H 0.050 0.950 17 C 0.046 3.954 18 N -0.849 5.849 19 Si 0.967 3.033 20 H -0.245 1.245 21 H -0.277 1.277 22 H -0.253 1.253 23 C -0.167 4.167 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.413 0.587 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.295 0.705 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.868 4.882 6.620 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.321 6.321 3 C 0.064 3.936 4 C -0.231 4.231 5 C -0.237 4.237 6 C 0.007 3.993 7 N -0.357 5.357 8 C 0.349 3.651 9 O -0.469 6.469 10 C -0.116 4.116 11 C -0.203 4.203 12 C -0.099 4.099 13 C -0.244 4.244 14 C 0.064 3.936 15 C -0.519 4.519 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.475 5.475 19 Si 0.789 3.211 20 H -0.169 1.169 21 H -0.203 1.203 22 H -0.177 1.177 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.967 4.885 7.094 24.529 hybrid contribution 0.346 -0.367 -0.303 0.588 sum -22.622 4.518 6.791 24.047 Atomic orbital electron populations 1.22993 0.79791 1.03593 1.01353 1.88004 1.21437 1.27396 1.95280 1.21720 0.90754 0.84163 0.96968 1.22337 1.03201 1.01126 0.96412 1.22443 1.03224 1.01187 0.96867 1.21473 0.93016 0.98625 0.86185 1.45725 1.06334 1.62421 1.21243 1.18622 0.82713 0.77507 0.86277 1.90680 1.54488 1.53799 1.47962 1.19707 0.94283 1.02848 0.94802 1.20967 0.98248 1.06400 0.94652 1.21032 0.94851 0.96904 0.97106 1.21390 0.94318 1.09414 0.99303 1.17768 0.93257 0.91627 0.90919 1.19466 0.92117 1.12685 1.27599 0.93165 1.26893 0.97343 1.01396 0.91208 1.69720 1.21240 1.32075 1.24455 0.85473 0.78555 0.76121 0.80940 1.16949 1.20339 1.17687 1.21202 0.94471 1.06284 0.96769 0.92458 0.89185 0.92547 0.90056 0.89864 0.91940 0.92073 0.89853 0.90436 0.89805 0.92395 0.74771 0.83832 0.83418 0.87456 0.89399 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.21 113.37 1.16 1.38 16 2 O -0.40 -7.84 10.29 -148.98 -1.53 -9.38 16 3 C 0.10 1.77 0.80 -10.79 -0.01 1.76 16 4 C -0.17 -2.17 8.25 71.98 0.59 -1.58 16 5 C -0.18 -2.44 8.02 71.99 0.58 -1.86 16 6 C 0.13 3.20 4.84 86.38 0.42 3.61 16 7 N -0.70 -20.43 5.14 -465.94 -2.40 -22.82 16 8 C 0.56 22.31 7.77 86.80 0.67 22.98 16 9 O -0.59 -27.76 16.33 -3.87 -0.06 -27.83 16 10 C -0.11 -4.85 5.87 -20.13 -0.12 -4.97 16 11 C -0.18 -6.48 9.55 22.70 0.22 -6.26 16 12 C -0.08 -2.99 10.01 22.18 0.22 -2.76 16 13 C -0.22 -10.22 7.17 22.77 0.16 -10.06 16 14 C 0.07 3.51 5.10 -21.32 -0.11 3.40 16 15 C -0.49 -28.55 9.57 23.47 0.22 -28.32 16 16 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 17 C 0.05 2.51 5.40 85.25 0.46 2.97 16 18 N -0.85 -47.31 13.93 21.82 0.30 -47.01 16 19 Si 0.97 42.19 24.52 68.60 1.68 43.87 16 20 H -0.24 -9.65 6.71 99.48 0.67 -8.98 16 21 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.25 -11.31 6.86 99.48 0.68 -10.63 16 23 C -0.17 -8.53 9.34 23.01 0.21 -8.31 16 24 H 0.06 0.54 6.42 -2.39 -0.02 0.53 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.53 6.42 -2.39 -0.02 0.51 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.75 6.54 -2.39 -0.02 0.74 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.91 6.58 -2.39 -0.02 0.90 16 31 H 0.08 0.81 6.54 -2.39 -0.02 0.79 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 10.02 5.01 -92.71 -0.46 9.56 16 36 H 0.14 3.73 6.38 -2.91 -0.02 3.71 16 37 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.11 4.76 4.72 -2.91 -0.01 4.75 16 39 H 0.30 14.65 8.30 -92.71 -0.77 13.88 16 40 H 0.09 4.90 7.64 -2.91 -0.02 4.88 16 Total: -1.00 -69.97 322.30 3.21 -66.76 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.53 Total: 24.43 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 4.69 Total: -28.02 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -2.09 Total: -69.83 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.60 Total: -37.20 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Total: -69.97 3.21 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174164336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.220 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds