Wall clock time and date at job start Mon Mar 30 2020 01:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47710 * 2 1 4 4 C 1.53003 * 109.47081 * 120.00516 * 2 1 3 5 5 H 1.09004 * 109.46310 * 299.99148 * 4 2 1 6 6 O 1.42901 * 109.46964 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47270 * 59.99214 * 4 2 1 8 8 N 1.46504 * 109.46884 * 185.00210 * 7 4 2 9 9 C 1.34771 * 119.99837 * 180.02562 * 8 7 4 10 10 O 1.21549 * 120.00073 * 0.02562 * 9 8 7 11 11 C 1.47882 * 120.00029 * 179.97438 * 9 8 7 12 12 C 1.39929 * 120.02562 * 359.72567 * 11 9 8 13 13 C 1.38322 * 120.35553 * 179.78506 * 12 11 9 14 14 C 1.37747 * 120.41743 * 0.46711 * 13 12 11 15 15 C 1.40750 * 120.03833 * 359.79443 * 14 13 12 16 16 C 1.41437 * 120.17687 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00179 * 334.91761 * 16 15 14 18 18 C 1.39938 * 119.99811 * 154.92121 * 16 15 14 19 19 N 1.30821 * 120.00197 * 342.59234 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 162.58549 * 18 16 15 21 21 H 1.48498 * 109.47095 * 60.00388 * 20 18 16 22 22 H 1.48500 * 109.47058 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47288 * 300.00364 * 20 18 16 24 24 C 1.38997 * 120.02733 * 180.02562 * 11 9 8 25 25 H 1.09003 * 109.47385 * 59.99381 * 1 2 3 26 26 H 1.08999 * 109.47908 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46853 * 300.00668 * 1 2 3 28 28 H 1.09003 * 109.46382 * 239.99576 * 2 1 3 29 29 H 1.08998 * 109.47042 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46604 * 300.00269 * 3 2 1 31 31 H 1.08991 * 109.47171 * 59.99715 * 3 2 1 32 32 H 0.96699 * 113.99394 * 299.98985 * 6 4 2 33 33 H 1.08993 * 109.47317 * 305.00011 * 7 4 2 34 34 H 1.08995 * 109.47032 * 65.00259 * 7 4 2 35 35 H 0.96996 * 119.99914 * 0.02562 * 8 7 4 36 36 H 1.08002 * 119.81493 * 359.97438 * 12 11 9 37 37 H 1.08004 * 119.79190 * 180.23395 * 13 12 11 38 38 H 1.08008 * 119.98137 * 179.76275 * 14 13 12 39 39 H 0.97004 * 119.99645 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.20327 * 359.95443 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6766 -0.2074 2.1392 6 8 3.4690 -0.7219 1.2489 7 6 1.5298 -2.1638 1.2492 8 7 1.9174 -2.8188 2.5010 9 6 1.5742 -4.1029 2.7240 10 8 0.9435 -4.7177 1.8864 11 6 1.9658 -4.7643 3.9874 12 6 2.6978 -4.0591 4.9492 13 6 3.0639 -4.6697 6.1352 14 6 2.7209 -5.9812 6.3793 15 6 1.9895 -6.7082 5.4213 16 6 1.6362 -8.0552 5.6687 17 1 2.2261 -8.6521 6.3484 18 6 0.5222 -8.6145 5.0327 19 7 -0.3802 -7.8376 4.4910 20 14 0.3240 -10.4704 4.9570 21 1 0.2624 -11.0183 6.3358 22 1 -0.9300 -10.8052 4.2354 23 1 1.4816 -11.0631 4.2401 24 6 1.6126 -6.0887 4.2177 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.8618 -1.1639 0.4838 33 1 0.4436 -2.1650 1.1597 34 1 1.9643 -2.7028 0.4074 35 1 2.4210 -2.3283 3.1693 36 1 2.9756 -3.0317 4.7658 37 1 3.6256 -4.1157 6.8728 38 1 3.0137 -6.4522 7.3061 39 1 -1.1526 -8.2254 4.0504 40 1 1.0513 -6.6381 3.4765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177817727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:43 Heat of formation + Delta-G solvation = -90.410678 kcal Electronic energy + Delta-G solvation = -21028.867155 eV Core-core repulsion = 17807.328313 eV Total energy + Delta-G solvation = -3221.538843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49035 -38.31796 -36.90468 -34.40354 -33.98780 -33.59227 -30.39673 -29.43010 -28.35855 -27.06532 -25.29276 -23.68866 -21.90053 -20.90530 -20.82650 -19.39551 -17.78831 -16.91395 -16.33808 -15.75112 -15.38266 -14.96928 -14.74852 -14.57423 -14.30672 -13.84513 -13.57955 -13.17884 -13.00877 -12.58364 -12.46985 -12.42602 -12.33393 -12.09348 -11.65188 -11.53474 -11.18753 -11.13888 -11.06744 -10.78329 -10.70904 -10.49604 -10.09093 -10.01585 -9.67298 -9.19976 -9.00090 -8.64384 -7.61138 -7.50193 -6.78456 -4.40193 2.22641 2.83598 3.08183 3.09948 3.17735 3.60942 3.87791 3.93246 4.22443 4.47461 4.62526 4.65878 4.74596 5.07460 5.15189 5.35807 5.40610 5.55254 5.61264 5.62143 5.70000 5.76681 5.84781 5.94648 6.05921 6.11795 6.12201 6.30543 6.73254 6.86243 7.00170 7.03434 7.22673 7.39786 7.45424 7.72045 7.77771 7.94179 8.11682 8.20922 8.51820 8.81587 8.84897 8.96666 10.16423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.003728 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.033785 B = 7508.100131 C = 8260.338933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.100 3.900 5 H 0.104 0.896 6 O -0.556 6.556 7 C 0.087 3.913 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.549 6.549 11 C -0.129 4.129 12 C -0.216 4.216 13 C -0.098 4.098 14 C -0.211 4.211 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.092 4.092 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.375 0.625 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 12.965 -7.245 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.199 4.199 4 C 0.040 3.960 5 H 0.122 0.878 6 O -0.362 6.362 7 C -0.037 4.037 8 N -0.386 5.386 9 C 0.354 3.646 10 O -0.428 6.428 11 C -0.132 4.132 12 C -0.236 4.236 13 C -0.116 4.116 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.112 4.112 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.851 12.845 -7.424 14.951 hybrid contribution 0.023 -0.797 -0.244 0.833 sum 1.874 12.049 -7.668 14.404 Atomic orbital electron populations 1.21918 0.94350 1.02640 1.02178 1.21743 0.96859 0.97394 0.98320 1.21747 1.01636 0.94949 1.01583 1.22252 0.81039 0.93906 0.98791 0.87795 1.86587 1.18783 1.80935 1.49846 1.22042 1.01001 0.92604 0.88073 1.45853 1.59325 1.13368 1.20066 1.18865 0.77973 0.80553 0.87242 1.90688 1.40396 1.64591 1.47101 1.19474 1.04075 0.96125 0.93506 1.20369 1.08132 0.98371 0.96742 1.20438 0.99940 0.95212 0.96054 1.21108 1.08521 0.94295 0.99203 1.17594 0.89850 0.93045 0.89885 1.19551 1.09767 0.96076 1.23650 0.90123 1.25959 0.94753 1.00714 0.93142 1.69783 1.07432 1.37665 1.26009 0.86322 0.78521 0.82232 0.79411 1.18986 1.20242 1.18735 1.21627 0.99754 0.92343 0.97464 0.92333 0.91757 0.92306 0.90706 0.91979 0.92806 0.92648 0.77728 0.90660 0.91763 0.76155 0.89142 0.88880 0.88610 0.90423 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.85 37.15 0.33 -0.95 16 2 C -0.12 -1.03 2.69 -90.62 -0.24 -1.28 16 3 C -0.14 -1.09 9.05 37.16 0.34 -0.76 16 4 C 0.10 1.02 2.58 -26.73 -0.07 0.95 16 5 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 6 O -0.56 -5.87 12.61 -35.23 -0.44 -6.32 16 7 C 0.09 1.18 5.09 -4.04 -0.02 1.16 16 8 N -0.73 -12.33 5.45 -61.24 -0.33 -12.66 16 9 C 0.56 12.52 7.77 -12.32 -0.10 12.42 16 10 O -0.55 -13.92 16.33 5.32 0.09 -13.83 16 11 C -0.13 -3.09 5.87 -105.04 -0.62 -3.71 16 12 C -0.22 -4.64 9.55 -38.92 -0.37 -5.02 16 13 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 16 C -0.46 -12.22 9.05 -37.73 -0.34 -12.57 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 19 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 20 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 2.92 9.04 45.56 0.41 3.33 16 33 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 6.18 6.49 -40.82 -0.26 5.92 16 36 H 0.09 1.64 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 40 H 0.13 3.87 5.77 -52.49 -0.30 3.57 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -30.52 332.68 -7.86 -38.38 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -4.89 Total: 12.58 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.87 Total: -16.71 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.28 Total: -33.00 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.36 Total: -20.15 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.52 -7.86 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177817727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.029 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds