Wall clock time and date at job start Mon Mar 30 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47710 * 2 1 4 4 C 1.53003 * 109.47081 * 120.00516 * 2 1 3 5 5 H 1.09004 * 109.46310 * 299.99148 * 4 2 1 6 6 O 1.42901 * 109.46964 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47270 * 59.99214 * 4 2 1 8 8 N 1.46504 * 109.46884 * 185.00210 * 7 4 2 9 9 C 1.34771 * 119.99837 * 180.02562 * 8 7 4 10 10 O 1.21549 * 120.00073 * 0.02562 * 9 8 7 11 11 C 1.47882 * 120.00029 * 179.97438 * 9 8 7 12 12 C 1.39929 * 120.02562 * 359.72567 * 11 9 8 13 13 C 1.38322 * 120.35553 * 179.78506 * 12 11 9 14 14 C 1.37747 * 120.41743 * 0.46711 * 13 12 11 15 15 C 1.40750 * 120.03833 * 359.79443 * 14 13 12 16 16 C 1.41437 * 120.17687 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00179 * 334.91761 * 16 15 14 18 18 C 1.39938 * 119.99811 * 154.92121 * 16 15 14 19 19 N 1.30821 * 120.00197 * 342.59234 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 162.58549 * 18 16 15 21 21 H 1.48498 * 109.47095 * 60.00388 * 20 18 16 22 22 H 1.48500 * 109.47058 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47288 * 300.00364 * 20 18 16 24 24 C 1.38997 * 120.02733 * 180.02562 * 11 9 8 25 25 H 1.09003 * 109.47385 * 59.99381 * 1 2 3 26 26 H 1.08999 * 109.47908 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46853 * 300.00668 * 1 2 3 28 28 H 1.09003 * 109.46382 * 239.99576 * 2 1 3 29 29 H 1.08998 * 109.47042 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46604 * 300.00269 * 3 2 1 31 31 H 1.08991 * 109.47171 * 59.99715 * 3 2 1 32 32 H 0.96699 * 113.99394 * 299.98985 * 6 4 2 33 33 H 1.08993 * 109.47317 * 305.00011 * 7 4 2 34 34 H 1.08995 * 109.47032 * 65.00259 * 7 4 2 35 35 H 0.96996 * 119.99914 * 0.02562 * 8 7 4 36 36 H 1.08002 * 119.81493 * 359.97438 * 12 11 9 37 37 H 1.08004 * 119.79190 * 180.23395 * 13 12 11 38 38 H 1.08008 * 119.98137 * 179.76275 * 14 13 12 39 39 H 0.97004 * 119.99645 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.20327 * 359.95443 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6766 -0.2074 2.1392 6 8 3.4690 -0.7219 1.2489 7 6 1.5298 -2.1638 1.2492 8 7 1.9174 -2.8188 2.5010 9 6 1.5742 -4.1029 2.7240 10 8 0.9435 -4.7177 1.8864 11 6 1.9658 -4.7643 3.9874 12 6 2.6978 -4.0591 4.9492 13 6 3.0639 -4.6697 6.1352 14 6 2.7209 -5.9812 6.3793 15 6 1.9895 -6.7082 5.4213 16 6 1.6362 -8.0552 5.6687 17 1 2.2261 -8.6521 6.3484 18 6 0.5222 -8.6145 5.0327 19 7 -0.3802 -7.8376 4.4910 20 14 0.3240 -10.4704 4.9570 21 1 0.2624 -11.0183 6.3358 22 1 -0.9300 -10.8052 4.2354 23 1 1.4816 -11.0631 4.2401 24 6 1.6126 -6.0887 4.2177 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.8618 -1.1639 0.4838 33 1 0.4436 -2.1650 1.1597 34 1 1.9643 -2.7028 0.4074 35 1 2.4210 -2.3283 3.1693 36 1 2.9756 -3.0317 4.7658 37 1 3.6256 -4.1157 6.8728 38 1 3.0137 -6.4522 7.3061 39 1 -1.1526 -8.2254 4.0504 40 1 1.0513 -6.6381 3.4765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177817727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:42 Heat of formation + Delta-G solvation = -111.567284 kcal Electronic energy + Delta-G solvation = -21029.784575 eV Core-core repulsion = 17807.328313 eV Total energy + Delta-G solvation = -3222.456262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01596 -39.47557 -38.66018 -35.70429 -35.24472 -35.12971 -32.17032 -31.29177 -29.50657 -27.78770 -27.16931 -24.95722 -23.39905 -22.73964 -21.74719 -20.93872 -19.54006 -18.20644 -17.55960 -17.17716 -16.94002 -16.51998 -16.25412 -15.82722 -15.44229 -15.25235 -14.96211 -14.83461 -14.37690 -14.26022 -13.68082 -13.54171 -13.34234 -13.09746 -12.94599 -12.83639 -12.80190 -12.53695 -12.32880 -12.20701 -11.91735 -11.82985 -11.53850 -11.49417 -11.07363 -11.06103 -10.65865 -10.15536 -9.47311 -9.39164 -8.66566 -6.38763 0.36928 1.00775 1.36191 1.47815 1.50652 2.08797 2.19304 2.21591 2.78385 3.42278 3.60425 3.69299 3.82341 3.98645 4.06899 4.22316 4.37497 4.41865 4.58350 4.60834 4.71109 4.82103 4.87039 4.91610 4.99148 5.07452 5.08378 5.18251 5.21312 5.30623 5.38890 5.43666 5.47949 5.51832 5.85826 5.92075 6.04454 6.27925 6.49727 6.66401 6.76887 6.87433 6.93985 7.29213 8.30250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.003728 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.033785 B = 7508.100131 C = 8260.338933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.138 4.138 4 C 0.113 3.887 5 H 0.107 0.893 6 O -0.565 6.565 7 C 0.083 3.917 8 N -0.708 5.708 9 C 0.559 3.441 10 O -0.591 6.591 11 C -0.140 4.140 12 C -0.198 4.198 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.499 4.499 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.272 1.272 23 H -0.261 1.261 24 C -0.130 4.130 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.388 0.612 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 14.921 -6.963 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.195 4.195 4 C 0.054 3.946 5 H 0.124 0.876 6 O -0.372 6.372 7 C -0.040 4.040 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.473 6.473 11 C -0.144 4.144 12 C -0.217 4.217 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.528 4.528 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.804 3.196 21 H -0.176 1.176 22 H -0.196 1.196 23 H -0.185 1.185 24 C -0.151 4.151 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.144 14.858 -7.133 16.779 hybrid contribution -0.270 -1.190 -0.332 1.265 sum 2.874 13.668 -7.465 15.837 Atomic orbital electron populations 1.21927 0.94411 1.01942 1.02910 1.21695 0.96714 0.97789 0.97493 1.21715 1.01491 0.94218 1.02118 1.22142 0.81056 0.91429 0.99998 0.87551 1.86562 1.18649 1.81091 1.50895 1.22317 1.00965 0.94493 0.86241 1.45677 1.57679 1.11456 1.21308 1.18748 0.77946 0.82051 0.86418 1.90664 1.42450 1.65993 1.48165 1.19797 1.03969 0.95527 0.95056 1.20845 1.05482 0.99892 0.95517 1.20923 0.99150 0.94404 0.96885 1.21420 1.07652 0.95489 0.99107 1.17948 0.91060 0.93900 0.90579 1.19846 1.10852 0.96853 1.25261 0.89736 1.26868 0.93935 1.05557 0.92220 1.69886 1.08152 1.39734 1.27362 0.85226 0.78476 0.75953 0.79926 1.17610 1.19638 1.18501 1.21434 1.02082 0.94003 0.97543 0.91145 0.93134 0.92127 0.89989 0.92122 0.91727 0.92716 0.76277 0.91155 0.91891 0.74932 0.84868 0.84367 0.87259 0.90302 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.85 71.98 0.64 -1.67 16 2 C -0.12 -1.69 2.69 -10.79 -0.03 -1.72 16 3 C -0.14 -1.75 9.05 71.98 0.65 -1.10 16 4 C 0.11 2.05 2.58 30.60 0.08 2.13 16 5 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 6 O -0.56 -10.31 12.61 -148.98 -1.88 -12.18 16 7 C 0.08 2.14 5.09 86.38 0.44 2.58 16 8 N -0.71 -22.81 5.45 -465.95 -2.54 -25.36 16 9 C 0.56 25.01 7.77 86.80 0.67 25.68 16 10 O -0.59 -31.08 16.33 -3.87 -0.06 -31.14 16 11 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 12 C -0.20 -7.98 9.55 22.70 0.22 -7.76 16 13 C -0.10 -3.87 10.01 22.17 0.22 -3.64 16 14 C -0.22 -10.28 9.78 22.77 0.22 -10.06 16 15 C 0.07 3.71 5.57 -21.32 -0.12 3.60 16 16 C -0.50 -27.46 9.05 23.47 0.21 -27.25 16 17 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 18 C 0.03 1.54 5.14 85.26 0.44 1.97 16 19 N -0.83 -46.55 10.97 21.82 0.24 -46.31 16 20 Si 0.98 39.93 29.59 68.60 2.03 41.96 16 21 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.13 -7.34 8.23 23.01 0.19 -7.15 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.90 6.32 -2.39 -0.02 0.88 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.06 0.80 7.68 -2.39 -0.02 0.78 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.39 4.98 9.04 -74.06 -0.67 4.31 16 33 H 0.07 1.94 6.17 -2.39 -0.01 1.92 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 11.44 6.49 -92.71 -0.60 10.84 16 36 H 0.13 4.19 6.38 -2.91 -0.02 4.17 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 40 H 0.10 6.17 5.77 -2.91 -0.02 6.15 16 Total: -1.00 -69.76 332.68 1.30 -68.46 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.21 Total: 35.85 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.72 Total: -31.28 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.30 Total: -71.67 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.94 Total: -43.33 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.76 1.30 -68.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177817727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.105 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds