Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 C 1.52996 * 109.47202 * 119.99844 * 2 1 3 5 5 H 1.08999 * 109.47007 * 184.99828 * 4 2 1 6 6 O 1.42895 * 109.47634 * 305.00305 * 4 2 1 7 7 C 1.53004 * 109.47057 * 65.00205 * 4 2 1 8 8 N 1.46501 * 109.47141 * 179.97438 * 7 4 2 9 9 C 1.34781 * 119.99712 * 180.02562 * 8 7 4 10 10 O 1.21545 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.47884 * 119.99498 * 180.02562 * 9 8 7 12 12 C 1.39918 * 120.02924 * 359.71694 * 11 9 8 13 13 C 1.38331 * 120.36103 * 180.30214 * 12 11 9 14 14 C 1.37750 * 120.40801 * 359.95229 * 13 12 11 15 15 C 1.40745 * 120.04338 * 0.05280 * 14 13 12 16 16 C 1.41436 * 120.17888 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00353 * 150.17449 * 16 15 14 18 18 C 1.39942 * 120.00049 * 330.17118 * 16 15 14 19 19 N 1.30821 * 119.99986 * 161.73255 * 18 16 15 20 20 Si 1.86801 * 119.99634 * 341.73112 * 18 16 15 21 21 H 1.48497 * 109.46947 * 95.41518 * 20 18 16 22 22 H 1.48502 * 109.46849 * 215.41325 * 20 18 16 23 23 H 1.48498 * 109.47200 * 335.41104 * 20 18 16 24 24 C 1.38997 * 120.02046 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47382 * 300.00115 * 1 2 3 27 27 H 1.08998 * 109.47686 * 59.99610 * 1 2 3 28 28 H 1.08998 * 109.47312 * 240.00519 * 2 1 3 29 29 H 1.09005 * 109.46531 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47240 * 300.00051 * 3 2 1 31 31 H 1.09003 * 109.47411 * 60.00570 * 3 2 1 32 32 H 0.96706 * 114.00173 * 59.99647 * 6 4 2 33 33 H 1.09009 * 109.46789 * 59.99568 * 7 4 2 34 34 H 1.08999 * 109.46904 * 299.99686 * 7 4 2 35 35 H 0.96993 * 119.99739 * 359.97438 * 8 7 4 36 36 H 1.08002 * 119.82107 * 0.25633 * 12 11 9 37 37 H 1.07994 * 119.79445 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.97927 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00041 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.20479 * 359.69718 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 8 1.4702 -0.1189 2.4131 7 6 1.6353 -2.1955 1.1879 8 7 2.1241 -2.8862 2.3838 9 6 1.8842 -4.2024 2.5472 10 8 1.2619 -4.8161 1.7026 11 6 2.3773 -4.8995 3.7547 12 6 3.0979 -4.1945 4.7250 13 6 3.5676 -4.8411 5.8540 14 6 3.3308 -6.1857 6.0368 15 6 2.6079 -6.9114 5.0716 16 6 2.3635 -8.2922 5.2561 17 1 1.4731 -8.7430 4.8432 18 6 3.2754 -9.0745 5.9737 19 7 2.9068 -10.2345 6.4531 20 14 5.0189 -8.4621 6.2468 21 1 5.1071 -7.7933 7.5697 22 1 5.9587 -9.6114 6.2096 23 1 5.3770 -7.4951 5.1783 24 6 2.1297 -6.2567 3.9239 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.5041 -0.1509 2.4396 33 1 2.0699 -2.6549 0.3001 34 1 0.5490 -2.2724 1.1421 35 1 2.6211 -2.3964 3.0576 36 1 3.2891 -3.1400 4.5913 37 1 4.1232 -4.2882 6.5970 38 1 3.7004 -6.6835 6.9212 39 1 3.5390 -10.7769 6.9502 40 1 1.5733 -6.8046 3.1779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177817739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = -88.707593 kcal Electronic energy + Delta-G solvation = -20945.010696 eV Core-core repulsion = 17723.545704 eV Total energy + Delta-G solvation = -3221.464992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73466 -38.60595 -37.22084 -34.19371 -34.05442 -33.63621 -30.83248 -30.06074 -28.51324 -27.57577 -25.24696 -23.94848 -22.31283 -20.70940 -20.58552 -19.77864 -18.02689 -16.96697 -16.41653 -16.14538 -15.67392 -15.56016 -14.77941 -14.65924 -14.41764 -14.05238 -13.62292 -13.53794 -13.06287 -12.75749 -12.70734 -12.50295 -12.42388 -12.25862 -11.98553 -11.65525 -11.53581 -11.24057 -11.04453 -10.88725 -10.77632 -10.53640 -10.21780 -10.00910 -9.71490 -9.42699 -9.14006 -8.84355 -7.86334 -7.75337 -7.00336 -4.55049 1.91861 2.52203 3.05750 3.17559 3.26178 3.41971 3.62196 3.93466 4.18142 4.39907 4.49359 4.50876 4.58817 4.88985 5.09057 5.24709 5.31654 5.33027 5.39410 5.51290 5.55813 5.67202 5.73063 5.74389 5.89104 5.97109 6.01362 6.04789 6.39177 6.64498 6.67063 6.71391 6.98256 7.21514 7.36005 7.41480 7.50643 7.75373 7.81172 8.02267 8.28407 8.53515 8.68857 8.73156 10.01910 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040415 B = 0.003425 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.649276 B = 8173.974960 C = 8537.962045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C -0.143 4.143 4 C 0.099 3.901 5 H 0.105 0.895 6 O -0.556 6.556 7 C 0.087 3.913 8 N -0.729 5.729 9 C 0.563 3.437 10 O -0.551 6.551 11 C -0.109 4.109 12 C -0.215 4.215 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.443 4.443 17 H 0.093 0.907 18 C 0.083 3.917 19 N -0.804 5.804 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.136 4.136 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.375 0.625 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.286 0.714 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 18.492 -8.168 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.200 4.200 4 C 0.040 3.960 5 H 0.123 0.877 6 O -0.362 6.362 7 C -0.038 4.038 8 N -0.383 5.383 9 C 0.353 3.647 10 O -0.430 6.430 11 C -0.112 4.112 12 C -0.235 4.235 13 C -0.102 4.102 14 C -0.241 4.241 15 C 0.079 3.921 16 C -0.471 4.471 17 H 0.111 0.889 18 C -0.136 4.136 19 N -0.428 5.428 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.156 4.156 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.223 0.777 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.241 0.759 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.253 17.886 -8.526 19.816 hybrid contribution 0.430 0.190 0.363 0.594 sum 0.684 18.076 -8.163 19.845 Atomic orbital electron populations 1.21945 0.94845 1.02445 1.02339 1.21721 0.96708 0.97462 0.98572 1.21760 1.00975 0.95245 1.02021 1.22225 0.98865 0.89636 0.85287 0.87723 1.86577 1.25680 1.81276 1.42644 1.22040 1.00166 0.92204 0.89353 1.45828 1.59005 1.09812 1.23624 1.18808 0.78448 0.81016 0.86451 1.90691 1.41231 1.66363 1.44668 1.19423 1.02795 0.94798 0.94175 1.20414 1.07926 0.97831 0.97290 1.20518 0.98662 0.94580 0.96401 1.21185 1.08599 0.94109 1.00222 1.17697 0.90646 0.93857 0.89931 1.19517 1.07642 0.91884 1.28082 0.88856 1.26166 1.01602 0.94364 0.91458 1.69690 1.37154 1.11130 1.24822 0.86312 0.80829 0.78561 0.80595 1.19537 1.21664 1.16698 1.21271 1.04337 0.92453 0.97562 0.91911 0.92283 0.92068 0.90056 0.92664 0.92733 0.91942 0.77666 0.90977 0.91256 0.75896 0.88487 0.88253 0.87878 0.90323 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.52 37.16 0.32 -0.75 16 2 C -0.13 -0.91 2.75 -90.62 -0.25 -1.16 16 3 C -0.14 -0.98 9.09 37.16 0.34 -0.64 16 4 C 0.10 0.89 2.80 -26.73 -0.07 0.82 16 5 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 6 O -0.56 -5.34 12.52 -35.23 -0.44 -5.78 16 7 C 0.09 1.03 5.09 -4.04 -0.02 1.01 16 8 N -0.73 -10.88 5.40 -61.23 -0.33 -11.21 16 9 C 0.56 11.15 7.77 -12.31 -0.10 11.06 16 10 O -0.55 -12.48 16.33 5.33 0.09 -12.40 16 11 C -0.11 -2.36 5.87 -105.04 -0.62 -2.97 16 12 C -0.21 -4.22 9.55 -38.92 -0.37 -4.60 16 13 C -0.08 -1.72 10.01 -39.73 -0.40 -2.12 16 14 C -0.22 -5.21 7.17 -38.81 -0.28 -5.49 16 15 C 0.08 2.07 5.10 -106.87 -0.55 1.53 16 16 C -0.44 -11.99 9.57 -37.73 -0.36 -12.35 16 17 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 18 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16 19 N -0.80 -21.29 13.93 55.55 0.77 -20.51 16 20 Si 0.91 20.46 24.52 -169.99 -4.17 16.29 16 21 H -0.27 -5.80 6.71 56.52 0.38 -5.42 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.24 -5.62 6.86 56.52 0.39 -5.23 16 24 C -0.14 -3.31 9.34 -38.44 -0.36 -3.67 16 25 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 26 H 0.06 0.36 6.72 -51.93 -0.35 0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 7.82 -51.93 -0.41 0.06 16 32 H 0.37 2.80 7.19 45.56 0.33 3.13 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 35 H 0.40 5.48 6.37 -40.82 -0.26 5.22 16 36 H 0.10 1.57 6.38 -52.49 -0.33 1.24 16 37 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 2.40 4.72 -52.48 -0.25 2.15 16 39 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.11 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -29.74 324.64 -6.90 -36.64 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.91 Total: 9.32 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.81 Total: -17.25 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.44 Total: -31.72 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.35 Total: -18.18 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.74 -6.90 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177817739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.064 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds