Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 C 1.52996 * 109.47202 * 119.99844 * 2 1 3 5 5 H 1.08999 * 109.47007 * 184.99828 * 4 2 1 6 6 O 1.42895 * 109.47634 * 305.00305 * 4 2 1 7 7 C 1.53004 * 109.47057 * 65.00205 * 4 2 1 8 8 N 1.46501 * 109.47141 * 179.97438 * 7 4 2 9 9 C 1.34781 * 119.99712 * 180.02562 * 8 7 4 10 10 O 1.21545 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.47884 * 119.99498 * 180.02562 * 9 8 7 12 12 C 1.39918 * 120.02924 * 359.71694 * 11 9 8 13 13 C 1.38331 * 120.36103 * 180.30214 * 12 11 9 14 14 C 1.37750 * 120.40801 * 359.95229 * 13 12 11 15 15 C 1.40745 * 120.04338 * 0.05280 * 14 13 12 16 16 C 1.41436 * 120.17888 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00353 * 150.17449 * 16 15 14 18 18 C 1.39942 * 120.00049 * 330.17118 * 16 15 14 19 19 N 1.30821 * 119.99986 * 161.73255 * 18 16 15 20 20 Si 1.86801 * 119.99634 * 341.73112 * 18 16 15 21 21 H 1.48497 * 109.46947 * 95.41518 * 20 18 16 22 22 H 1.48502 * 109.46849 * 215.41325 * 20 18 16 23 23 H 1.48498 * 109.47200 * 335.41104 * 20 18 16 24 24 C 1.38997 * 120.02046 * 179.97438 * 11 9 8 25 25 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47382 * 300.00115 * 1 2 3 27 27 H 1.08998 * 109.47686 * 59.99610 * 1 2 3 28 28 H 1.08998 * 109.47312 * 240.00519 * 2 1 3 29 29 H 1.09005 * 109.46531 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47240 * 300.00051 * 3 2 1 31 31 H 1.09003 * 109.47411 * 60.00570 * 3 2 1 32 32 H 0.96706 * 114.00173 * 59.99647 * 6 4 2 33 33 H 1.09009 * 109.46789 * 59.99568 * 7 4 2 34 34 H 1.08999 * 109.46904 * 299.99686 * 7 4 2 35 35 H 0.96993 * 119.99739 * 359.97438 * 8 7 4 36 36 H 1.08002 * 119.82107 * 0.25633 * 12 11 9 37 37 H 1.07994 * 119.79445 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.97927 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00041 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.20479 * 359.69718 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 8 1.4702 -0.1189 2.4131 7 6 1.6353 -2.1955 1.1879 8 7 2.1241 -2.8862 2.3838 9 6 1.8842 -4.2024 2.5472 10 8 1.2619 -4.8161 1.7026 11 6 2.3773 -4.8995 3.7547 12 6 3.0979 -4.1945 4.7250 13 6 3.5676 -4.8411 5.8540 14 6 3.3308 -6.1857 6.0368 15 6 2.6079 -6.9114 5.0716 16 6 2.3635 -8.2922 5.2561 17 1 1.4731 -8.7430 4.8432 18 6 3.2754 -9.0745 5.9737 19 7 2.9068 -10.2345 6.4531 20 14 5.0189 -8.4621 6.2468 21 1 5.1071 -7.7933 7.5697 22 1 5.9587 -9.6114 6.2096 23 1 5.3770 -7.4951 5.1783 24 6 2.1297 -6.2567 3.9239 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.5041 -0.1509 2.4396 33 1 2.0699 -2.6549 0.3001 34 1 0.5490 -2.2724 1.1421 35 1 2.6211 -2.3964 3.0576 36 1 3.2891 -3.1400 4.5913 37 1 4.1232 -4.2882 6.5970 38 1 3.7004 -6.6835 6.9212 39 1 3.5390 -10.7769 6.9502 40 1 1.5733 -6.8046 3.1779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177817739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -110.223992 kcal Electronic energy + Delta-G solvation = -20945.943717 eV Core-core repulsion = 17723.545704 eV Total energy + Delta-G solvation = -3222.398013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12323 -39.65969 -38.87402 -35.67944 -35.34345 -34.71266 -32.58778 -31.80843 -29.59690 -28.10674 -27.09131 -25.20705 -23.63074 -22.45007 -21.75201 -20.90874 -19.65741 -18.22570 -17.72621 -17.33609 -17.02359 -16.77279 -16.44058 -15.95239 -15.56615 -15.41570 -15.03716 -14.68499 -14.56936 -14.41271 -13.91978 -13.66707 -13.46629 -13.28458 -12.97442 -12.87578 -12.84022 -12.68230 -12.31812 -12.21694 -11.78550 -11.76739 -11.58312 -11.52923 -11.25196 -11.03910 -10.70862 -10.19294 -9.63759 -9.56036 -8.92369 -6.56294 0.16871 0.73420 1.25266 1.41259 1.48271 1.93959 2.12315 2.15328 2.64490 3.43431 3.47422 3.63018 3.81471 3.96657 3.98281 4.19738 4.25630 4.38808 4.41262 4.55170 4.65011 4.72177 4.81195 4.88153 4.90713 4.92632 5.01784 5.06193 5.15024 5.20874 5.36912 5.41582 5.44573 5.47131 5.64328 5.71106 5.83683 6.09711 6.29015 6.55409 6.65130 6.73303 6.73607 7.21990 8.16744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040415 B = 0.003425 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.649276 B = 8173.974960 C = 8537.962045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.111 3.889 5 H 0.111 0.889 6 O -0.564 6.564 7 C 0.083 3.917 8 N -0.705 5.705 9 C 0.560 3.440 10 O -0.588 6.588 11 C -0.114 4.114 12 C -0.182 4.182 13 C -0.082 4.082 14 C -0.225 4.225 15 C 0.066 3.934 16 C -0.489 4.489 17 H 0.050 0.950 18 C 0.045 3.955 19 N -0.849 5.849 20 Si 0.968 3.032 21 H -0.246 1.246 22 H -0.277 1.277 23 H -0.252 1.252 24 C -0.167 4.167 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.384 0.616 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.415 0.585 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.295 0.705 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 22.732 -7.762 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.197 4.197 4 C 0.052 3.948 5 H 0.129 0.871 6 O -0.372 6.372 7 C -0.041 4.041 8 N -0.358 5.358 9 C 0.349 3.651 10 O -0.470 6.470 11 C -0.117 4.117 12 C -0.202 4.202 13 C -0.100 4.100 14 C -0.245 4.245 15 C 0.063 3.937 16 C -0.518 4.518 17 H 0.068 0.932 18 C -0.169 4.169 19 N -0.475 5.475 20 Si 0.790 3.210 21 H -0.171 1.171 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.187 4.187 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.277 22.177 -8.112 23.724 hybrid contribution -0.291 -0.862 0.131 0.919 sum 1.986 21.315 -7.981 22.847 Atomic orbital electron populations 1.21951 0.94516 1.02038 1.03120 1.21690 0.96970 0.97646 0.97747 1.21732 1.01071 0.94668 1.02231 1.22157 0.99193 0.87419 0.86052 0.87089 1.86557 1.26684 1.81087 1.42831 1.22299 1.00112 0.93869 0.87775 1.45663 1.57543 1.08011 1.24570 1.18609 0.78427 0.82471 0.85588 1.90682 1.43024 1.67569 1.45688 1.19717 1.02471 0.93942 0.95604 1.20995 1.04029 0.99858 0.95287 1.21042 0.98035 0.93426 0.97494 1.21395 1.07808 0.95626 0.99633 1.17773 0.91719 0.93289 0.90878 1.19462 1.07811 0.93546 1.31021 0.93206 1.26908 1.04845 0.94336 0.90841 1.69721 1.38731 1.12506 1.26548 0.85461 0.76129 0.78420 0.81013 1.17074 1.20358 1.17550 1.21199 1.05914 0.94192 0.97433 0.92872 0.91526 0.91376 0.89720 0.92500 0.91901 0.92374 0.76606 0.91236 0.91367 0.74640 0.83587 0.83500 0.87520 0.89406 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.52 71.98 0.61 -1.15 16 2 C -0.12 -1.42 2.75 -10.79 -0.03 -1.45 16 3 C -0.14 -1.49 9.09 71.98 0.65 -0.84 16 4 C 0.11 1.64 2.80 30.59 0.09 1.72 16 5 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 6 O -0.56 -8.80 12.52 -148.98 -1.86 -10.66 16 7 C 0.08 1.77 5.09 86.38 0.44 2.21 16 8 N -0.71 -18.92 5.40 -465.91 -2.52 -21.44 16 9 C 0.56 21.48 7.77 86.80 0.67 22.16 16 10 O -0.59 -26.95 16.33 -3.86 -0.06 -27.02 16 11 C -0.11 -4.79 5.87 -20.13 -0.12 -4.91 16 12 C -0.18 -6.33 9.55 22.70 0.22 -6.11 16 13 C -0.08 -3.01 10.01 22.18 0.22 -2.78 16 14 C -0.23 -10.19 7.17 22.77 0.16 -10.03 16 15 C 0.07 3.44 5.10 -21.32 -0.11 3.33 16 16 C -0.49 -28.39 9.57 23.47 0.22 -28.16 16 17 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 18 C 0.05 2.45 5.40 85.26 0.46 2.91 16 19 N -0.85 -47.19 13.93 21.83 0.30 -46.88 16 20 Si 0.97 41.95 24.52 68.60 1.68 43.63 16 21 H -0.25 -9.68 6.71 99.48 0.67 -9.01 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.25 -11.11 6.86 99.48 0.68 -10.43 16 24 C -0.17 -8.42 9.34 23.01 0.21 -8.21 16 25 H 0.05 0.69 6.56 -2.38 -0.02 0.68 16 26 H 0.07 0.63 6.72 -2.38 -0.02 0.61 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.68 7.82 -2.39 -0.02 0.66 16 32 H 0.38 4.49 7.19 -74.05 -0.53 3.95 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.52 6.56 -2.39 -0.02 1.51 16 35 H 0.42 9.27 6.37 -92.71 -0.59 8.68 16 36 H 0.15 3.69 6.38 -2.91 -0.02 3.67 16 37 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.11 4.73 4.72 -2.91 -0.01 4.71 16 39 H 0.30 14.61 8.30 -92.71 -0.77 13.84 16 40 H 0.09 4.82 7.64 -2.91 -0.02 4.80 16 Total: -1.00 -68.72 324.64 1.14 -67.58 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.12 Total: 26.09 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.71 Total: -31.31 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -2.21 Total: -68.32 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.93 Total: -37.68 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.68 Total: 43.63 kcal Total: -68.72 1.14 -67.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177817739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.646 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds