Wall clock time and date at job start Mon Mar 30 2020 01:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 C 1.52996 * 109.47695 * 300.00596 * 3 2 1 5 5 C 1.53012 * 109.46553 * 60.00268 * 3 2 1 6 6 O 1.42896 * 109.47029 * 65.00328 * 5 3 2 7 7 N 1.46495 * 109.47370 * 179.97438 * 3 2 1 8 8 C 1.34775 * 120.00222 * 180.02562 * 7 3 2 9 9 O 1.21552 * 119.99721 * 0.02562 * 8 7 3 10 10 C 1.47883 * 120.00213 * 180.02562 * 8 7 3 11 11 C 1.39915 * 120.02452 * 359.72908 * 10 8 7 12 12 C 1.38330 * 120.35904 * 179.71568 * 11 10 8 13 13 C 1.37759 * 120.40865 * 0.55885 * 12 11 10 14 14 C 1.40745 * 120.04087 * 359.72473 * 13 12 11 15 15 C 1.41439 * 120.17725 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00105 * 24.43154 * 15 14 13 17 17 C 1.39938 * 119.99486 * 204.43415 * 15 14 13 18 18 N 1.30823 * 120.00346 * 17.87808 * 17 15 14 19 19 Si 1.86804 * 119.99500 * 197.87747 * 17 15 14 20 20 H 1.48497 * 109.47141 * 90.00296 * 19 17 15 21 21 H 1.48499 * 109.46903 * 210.00179 * 19 17 15 22 22 H 1.48498 * 109.47411 * 329.99709 * 19 17 15 23 23 C 1.38999 * 120.02522 * 180.02562 * 10 8 7 24 24 H 1.09003 * 109.47320 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47357 * 299.99185 * 1 2 3 26 26 H 1.09006 * 109.47544 * 59.99805 * 1 2 3 27 27 H 1.08998 * 109.47595 * 120.00514 * 2 1 3 28 28 H 1.08999 * 109.46893 * 240.00721 * 2 1 3 29 29 H 1.09010 * 109.47234 * 59.98938 * 4 3 2 30 30 H 1.08997 * 109.47847 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46655 * 299.99909 * 4 3 2 32 32 H 1.09001 * 109.46712 * 185.00234 * 5 3 2 33 33 H 1.08996 * 109.47016 * 305.00041 * 5 3 2 34 34 H 0.96705 * 113.99985 * 180.02562 * 6 5 3 35 35 H 0.96998 * 120.00105 * 0.02562 * 7 3 2 36 36 H 1.07997 * 119.82238 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.79618 * 180.25630 * 12 11 10 38 38 H 1.08001 * 119.97912 * 179.74280 * 13 12 11 39 39 H 0.97001 * 120.00083 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.20378 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1639 -1.2491 5 6 1.5299 2.1636 1.2494 6 8 2.0998 1.5612 2.4131 7 7 3.5049 1.4425 0.0006 8 6 4.1788 2.6097 0.0012 9 8 3.5710 3.6623 0.0018 10 6 5.6577 2.6097 0.0013 11 6 6.3578 1.3983 0.0064 12 6 7.7410 1.3902 0.0006 13 6 8.4453 2.5742 0.0012 14 6 7.7583 3.8026 0.0020 15 6 8.4784 5.0200 0.0022 16 1 9.4861 5.0513 -0.3851 17 6 7.8852 6.1837 0.5042 18 7 6.8341 6.1004 1.2787 19 14 8.5942 7.8561 0.0685 20 1 7.9493 8.3596 -1.1707 21 1 8.3394 8.8067 1.1806 22 1 10.0577 7.7316 -0.1504 23 6 6.3532 3.8132 0.0025 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5137 -0.8901 29 1 0.4399 2.1638 -1.2491 30 1 1.8929 3.1917 -1.2489 31 1 1.8933 1.6501 -2.1391 32 1 1.8183 3.2139 1.2058 33 1 0.4437 2.0867 1.2953 34 1 1.8195 1.9684 3.2442 35 1 3.9899 0.6025 0.0006 36 1 5.8153 0.4645 0.0107 37 1 8.2722 0.4499 0.0004 38 1 9.5252 2.5598 0.0009 39 1 6.4231 6.9071 1.6270 40 1 5.8169 4.7506 0.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179188672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:27 Heat of formation + Delta-G solvation = -77.698559 kcal Electronic energy + Delta-G solvation = -21853.940665 eV Core-core repulsion = 18632.953061 eV Total energy + Delta-G solvation = -3220.987604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83524 -37.71278 -36.55040 -35.15848 -33.73772 -32.44141 -30.26365 -29.42894 -28.80145 -26.00491 -25.29791 -24.50672 -22.35562 -20.93773 -19.48879 -18.99513 -17.71231 -17.13989 -16.48294 -15.53308 -15.24947 -14.83027 -14.75672 -14.47450 -14.07116 -13.60695 -13.17984 -13.02094 -12.84802 -12.57660 -12.41740 -12.19065 -11.98436 -11.82423 -11.65204 -11.53134 -11.14887 -11.06291 -10.82356 -10.67021 -10.50342 -10.44123 -9.98436 -9.72043 -9.64957 -9.18951 -8.74388 -8.52322 -7.57993 -7.47840 -6.77215 -4.38395 2.27346 2.84577 3.08944 3.12081 3.18170 3.68683 3.92268 3.95060 4.39772 4.67192 4.78109 4.93472 5.22164 5.31916 5.43530 5.50600 5.61977 5.65267 5.76503 5.87258 5.91628 5.96064 6.02140 6.12404 6.14531 6.26846 6.33713 6.52054 6.75820 7.00677 7.03825 7.09056 7.25185 7.42662 7.75034 7.80485 7.82751 7.97082 8.17873 8.26215 8.54739 8.83630 8.87393 9.06294 10.17414 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.004749 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.605337 B = 5894.525920 C = 6520.157513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.182 3.818 4 C -0.166 4.166 5 C 0.061 3.939 6 O -0.565 6.565 7 N -0.720 5.720 8 C 0.571 3.429 9 O -0.549 6.549 10 C -0.127 4.127 11 C -0.216 4.216 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.462 4.462 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.784 5.784 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.093 4.093 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.374 0.626 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 -7.862 -1.118 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.096 3.904 4 C -0.224 4.224 5 C -0.018 4.018 6 O -0.369 6.369 7 N -0.372 5.372 8 C 0.362 3.638 9 O -0.428 6.428 10 C -0.130 4.130 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.491 4.491 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.408 5.408 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.744 -7.338 -1.422 13.088 hybrid contribution 0.240 0.626 0.392 0.776 sum -10.504 -6.713 -1.031 12.508 Atomic orbital electron populations 1.21850 0.95077 1.01735 1.02142 1.21704 0.96501 0.95225 1.02757 1.20228 0.81078 0.95339 0.93768 1.22243 1.00650 1.03229 0.96281 1.22722 0.95501 0.98220 0.85352 1.86459 1.73423 1.61073 1.15957 1.45890 1.05256 1.09177 1.76904 1.18728 0.88249 0.82732 0.74103 1.90602 1.70114 1.31614 1.50480 1.19509 0.90313 0.95216 1.07964 1.20359 0.94059 0.94777 1.14372 1.20435 0.93653 0.96607 1.01023 1.21095 0.97893 0.92442 1.11794 1.17599 0.91582 0.92465 0.88772 1.19590 1.01161 0.92250 1.36073 0.90122 1.25951 0.94317 1.01590 0.92649 1.69800 1.17864 1.31590 1.21566 0.86284 0.80351 0.80812 0.79135 1.19175 1.20261 1.18593 1.21628 0.94082 0.96235 0.99368 0.92572 0.92340 0.92262 0.90664 0.91544 0.91946 0.89894 0.92147 0.91266 0.93605 0.78038 0.76654 0.89277 0.88967 0.88684 0.90535 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.21 37.15 0.34 -1.06 16 2 C -0.12 -1.43 5.00 -26.73 -0.13 -1.56 16 3 C 0.18 2.65 0.61 -131.82 -0.08 2.57 16 4 C -0.17 -2.33 8.05 37.16 0.30 -2.03 16 5 C 0.06 0.90 5.42 37.16 0.20 1.10 16 6 O -0.56 -8.47 12.95 -35.23 -0.46 -8.93 16 7 N -0.72 -12.54 4.82 -48.53 -0.23 -12.77 16 8 C 0.57 12.61 7.19 -12.31 -0.09 12.52 16 9 O -0.55 -13.31 12.59 5.32 0.07 -13.25 16 10 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 11 C -0.22 -4.69 9.55 -38.92 -0.37 -5.06 16 12 C -0.10 -2.17 10.01 -39.72 -0.40 -2.56 16 13 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 14 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 15 C -0.46 -12.29 9.05 -37.73 -0.34 -12.63 16 16 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 17 C 0.07 1.89 5.14 -17.35 -0.09 1.80 16 18 N -0.78 -20.96 10.95 55.55 0.61 -20.35 16 19 Si 0.91 18.95 29.60 -169.99 -5.03 13.91 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.09 -2.52 8.24 -38.44 -0.32 -2.83 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 26 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 27 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.71 6.43 -51.92 -0.33 0.37 16 30 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.24 6.31 -51.93 -0.33 0.91 16 33 H 0.05 0.55 6.17 -51.93 -0.32 0.23 16 34 H 0.37 4.09 9.12 45.56 0.42 4.51 16 35 H 0.40 6.33 6.49 -40.82 -0.26 6.06 16 36 H 0.09 1.64 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 40 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -30.52 321.06 -7.30 -37.81 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -4.52 Total: 15.64 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.57 Total: -16.91 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.37 Total: -33.12 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.39 Total: -22.17 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.52 -7.30 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179188672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds