Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.52996 * 109.47463 * 59.99884 * 3 2 1 5 5 C 1.52999 * 109.46883 * 299.99465 * 3 2 1 6 6 O 1.42902 * 109.47206 * 300.00337 * 5 3 2 7 7 N 1.46507 * 109.46787 * 179.97438 * 3 2 1 8 8 C 1.34773 * 119.99656 * 179.97438 * 7 3 2 9 9 O 1.21549 * 120.00499 * 0.02562 * 8 7 3 10 10 C 1.47893 * 119.99648 * 179.97438 * 8 7 3 11 11 C 1.39915 * 120.02641 * 359.72725 * 10 8 7 12 12 C 1.38322 * 120.35827 * 179.78813 * 11 10 8 13 13 C 1.37756 * 120.41197 * 0.46636 * 12 11 10 14 14 C 1.40745 * 120.03986 * 359.78745 * 13 12 11 15 15 C 1.41433 * 120.17984 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00050 * 334.93068 * 15 14 13 17 17 C 1.39938 * 120.00222 * 154.92524 * 15 14 13 18 18 N 1.30825 * 119.99979 * 342.59039 * 17 15 14 19 19 Si 1.86800 * 119.99906 * 162.58877 * 17 15 14 20 20 H 1.48504 * 109.46909 * 60.00759 * 19 17 15 21 21 H 1.48505 * 109.47084 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47198 * 300.00236 * 19 17 15 23 23 C 1.38995 * 120.02027 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47577 * 300.00458 * 1 2 3 25 25 H 1.09002 * 109.47223 * 60.00314 * 1 2 3 26 26 H 1.08996 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47193 * 239.99878 * 2 1 3 28 28 H 1.09007 * 109.46852 * 119.99365 * 2 1 3 29 29 H 1.09002 * 109.47083 * 299.99815 * 4 3 2 30 30 H 1.09002 * 109.47063 * 59.99975 * 4 3 2 31 31 H 1.08996 * 109.47309 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.46826 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47070 * 60.00549 * 5 3 2 34 34 H 0.96701 * 113.99854 * 180.02562 * 6 5 3 35 35 H 0.96996 * 119.99830 * 359.97438 * 7 3 2 36 36 H 1.08003 * 119.81946 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.79635 * 180.23256 * 12 11 10 38 38 H 1.08005 * 119.97575 * 179.77108 * 13 12 11 39 39 H 0.96997 * 119.99840 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.20744 * 359.95712 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 8 2.0064 1.4900 -2.4160 7 7 3.5050 1.4426 0.0006 8 6 4.1788 2.6098 0.0002 9 8 3.5710 3.6625 -0.0002 10 6 5.6577 2.6098 0.0014 11 6 6.3578 1.3985 0.0087 12 6 7.7410 1.3904 0.0055 13 6 8.4453 2.5744 0.0047 14 6 7.7583 3.8028 0.0026 15 6 8.4783 5.0201 0.0012 16 1 9.4823 5.0541 0.3980 17 6 7.8901 6.1805 -0.5142 18 7 6.8409 6.0924 -1.2908 19 14 8.6028 7.8551 -0.0935 20 1 10.0095 7.9267 -0.5640 21 1 7.8040 8.9147 -0.7601 22 1 8.5619 8.0551 1.3774 23 6 6.3531 3.8133 0.0004 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4399 2.1638 1.2491 30 1 1.8933 1.6501 2.1392 31 1 1.8935 3.1914 1.2494 32 1 1.8936 3.1912 -1.2495 33 1 0.4399 2.1637 -1.2493 34 1 1.7214 1.8937 -3.2472 35 1 3.9899 0.6026 0.0013 36 1 5.8153 0.4646 0.0139 37 1 8.2723 0.4501 0.0074 38 1 9.5252 2.5599 0.0059 39 1 6.4329 6.8968 -1.6478 40 1 5.8168 4.7507 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179188682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = -78.225652 kcal Electronic energy + Delta-G solvation = -21840.902455 eV Core-core repulsion = 18619.891994 eV Total energy + Delta-G solvation = -3221.010460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84973 -37.72175 -36.56887 -35.15329 -33.73878 -32.44090 -30.26905 -29.43639 -28.80621 -26.00736 -25.29965 -24.50085 -22.36155 -20.94381 -19.49357 -19.00248 -17.72116 -17.13288 -16.49655 -15.54956 -15.25022 -14.83938 -14.73143 -14.49164 -14.07399 -13.60768 -13.18697 -13.03946 -12.85195 -12.56997 -12.42230 -12.18891 -11.97641 -11.82098 -11.65317 -11.53976 -11.13476 -11.06272 -10.81465 -10.68929 -10.51140 -10.44776 -10.00610 -9.73874 -9.65658 -9.18517 -8.75342 -8.53730 -7.58475 -7.48155 -6.77165 -4.38854 2.26344 2.84985 3.08474 3.10260 3.18612 3.68335 3.91127 3.94632 4.37427 4.67017 4.79986 4.94902 5.23110 5.32680 5.44188 5.50452 5.62364 5.64525 5.77191 5.87066 5.91899 5.96099 6.02327 6.12000 6.16059 6.27629 6.32920 6.52231 6.75169 6.99962 7.03193 7.08171 7.24623 7.42059 7.74253 7.79052 7.81725 7.96264 8.17078 8.25187 8.53919 8.83196 8.86811 9.04503 10.17604 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.004728 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.913478 B = 5920.253534 C = 6545.110512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.183 3.817 4 C -0.166 4.166 5 C 0.060 3.940 6 O -0.566 6.566 7 N -0.721 5.721 8 C 0.570 3.430 9 O -0.549 6.549 10 C -0.127 4.127 11 C -0.215 4.215 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.099 3.901 15 C -0.462 4.462 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.092 4.092 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.374 0.626 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 -7.798 1.110 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.096 3.904 4 C -0.224 4.224 5 C -0.018 4.018 6 O -0.371 6.371 7 N -0.373 5.373 8 C 0.361 3.639 9 O -0.428 6.428 10 C -0.131 4.131 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.491 4.491 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.409 5.409 19 Si 0.734 3.266 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.112 4.112 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.678 -7.281 1.413 13.002 hybrid contribution 0.268 0.637 -0.399 0.798 sum -10.411 -6.644 1.014 12.392 Atomic orbital electron populations 1.21831 0.95080 1.01700 1.02098 1.21689 0.96509 0.95178 1.02726 1.20228 0.80980 0.95436 0.93755 1.22240 1.00656 1.03233 0.96275 1.22717 0.96501 0.97384 0.85241 1.86449 1.77949 1.56866 1.15792 1.45921 1.05328 1.09187 1.76901 1.18745 0.88273 0.82734 0.74130 1.90602 1.70112 1.31609 1.50463 1.19509 0.90296 0.95229 1.08023 1.20361 0.94066 0.94778 1.14353 1.20434 0.93650 0.96615 1.01012 1.21099 0.97904 0.92448 1.11734 1.17591 0.91569 0.92453 0.88747 1.19548 1.01450 0.92430 1.35717 0.90176 1.25946 0.94310 1.01554 0.92675 1.69788 1.17966 1.31805 1.21360 0.86337 0.79740 0.80499 0.79995 1.18991 1.20259 1.18743 1.21621 0.94078 0.96215 0.99319 0.92323 0.92361 0.92608 0.90581 0.91618 0.91936 0.92142 0.89898 0.91088 0.93616 0.78024 0.76624 0.89265 0.88956 0.88671 0.90480 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.21 37.16 0.34 -1.07 16 2 C -0.12 -1.43 4.96 -26.73 -0.13 -1.56 16 3 C 0.18 2.66 0.62 -131.82 -0.08 2.58 16 4 C -0.17 -2.33 8.05 37.16 0.30 -2.03 16 5 C 0.06 0.89 5.38 37.16 0.20 1.09 16 6 O -0.57 -8.33 12.85 -35.23 -0.45 -8.78 16 7 N -0.72 -12.52 4.92 -48.52 -0.24 -12.76 16 8 C 0.57 12.54 7.19 -12.31 -0.09 12.45 16 9 O -0.55 -13.25 12.54 5.32 0.07 -13.18 16 10 C -0.13 -3.07 5.87 -105.04 -0.62 -3.68 16 11 C -0.22 -4.67 9.55 -38.92 -0.37 -5.04 16 12 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 13 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 14 C 0.10 2.65 5.57 -106.87 -0.59 2.06 16 15 C -0.46 -12.29 9.05 -37.73 -0.34 -12.63 16 16 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 17 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.78 -20.95 10.96 55.55 0.61 -20.35 16 19 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.09 -2.49 8.23 -38.44 -0.32 -2.80 16 24 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 25 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.42 6.16 -51.93 -0.32 1.10 16 32 H 0.07 1.28 6.16 -51.93 -0.32 0.96 16 33 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 34 H 0.37 3.99 9.12 45.56 0.42 4.40 16 35 H 0.40 6.31 6.49 -40.82 -0.26 6.04 16 36 H 0.09 1.63 6.38 -52.48 -0.33 1.29 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16 40 H 0.13 3.86 5.76 -52.49 -0.30 3.55 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -30.34 321.01 -7.30 -37.64 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -4.52 Total: 15.60 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.57 Total: -16.91 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.37 Total: -33.10 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.39 Total: -21.96 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.34 -7.30 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179188682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.583 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds