Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.52996 * 109.47463 * 59.99884 * 3 2 1 5 5 C 1.52999 * 109.46883 * 299.99465 * 3 2 1 6 6 O 1.42902 * 109.47206 * 300.00337 * 5 3 2 7 7 N 1.46507 * 109.46787 * 179.97438 * 3 2 1 8 8 C 1.34773 * 119.99656 * 179.97438 * 7 3 2 9 9 O 1.21549 * 120.00499 * 0.02562 * 8 7 3 10 10 C 1.47893 * 119.99648 * 179.97438 * 8 7 3 11 11 C 1.39915 * 120.02641 * 359.72725 * 10 8 7 12 12 C 1.38322 * 120.35827 * 179.78813 * 11 10 8 13 13 C 1.37756 * 120.41197 * 0.46636 * 12 11 10 14 14 C 1.40745 * 120.03986 * 359.78745 * 13 12 11 15 15 C 1.41433 * 120.17984 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00050 * 334.93068 * 15 14 13 17 17 C 1.39938 * 120.00222 * 154.92524 * 15 14 13 18 18 N 1.30825 * 119.99979 * 342.59039 * 17 15 14 19 19 Si 1.86800 * 119.99906 * 162.58877 * 17 15 14 20 20 H 1.48504 * 109.46909 * 60.00759 * 19 17 15 21 21 H 1.48505 * 109.47084 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47198 * 300.00236 * 19 17 15 23 23 C 1.38995 * 120.02027 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47577 * 300.00458 * 1 2 3 25 25 H 1.09002 * 109.47223 * 60.00314 * 1 2 3 26 26 H 1.08996 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47193 * 239.99878 * 2 1 3 28 28 H 1.09007 * 109.46852 * 119.99365 * 2 1 3 29 29 H 1.09002 * 109.47083 * 299.99815 * 4 3 2 30 30 H 1.09002 * 109.47063 * 59.99975 * 4 3 2 31 31 H 1.08996 * 109.47309 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.46826 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47070 * 60.00549 * 5 3 2 34 34 H 0.96701 * 113.99854 * 180.02562 * 6 5 3 35 35 H 0.96996 * 119.99830 * 359.97438 * 7 3 2 36 36 H 1.08003 * 119.81946 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.79635 * 180.23256 * 12 11 10 38 38 H 1.08005 * 119.97575 * 179.77108 * 13 12 11 39 39 H 0.96997 * 119.99840 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.20744 * 359.95712 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 8 2.0064 1.4900 -2.4160 7 7 3.5050 1.4426 0.0006 8 6 4.1788 2.6098 0.0002 9 8 3.5710 3.6625 -0.0002 10 6 5.6577 2.6098 0.0014 11 6 6.3578 1.3985 0.0087 12 6 7.7410 1.3904 0.0055 13 6 8.4453 2.5744 0.0047 14 6 7.7583 3.8028 0.0026 15 6 8.4783 5.0201 0.0012 16 1 9.4823 5.0541 0.3980 17 6 7.8901 6.1805 -0.5142 18 7 6.8409 6.0924 -1.2908 19 14 8.6028 7.8551 -0.0935 20 1 10.0095 7.9267 -0.5640 21 1 7.8040 8.9147 -0.7601 22 1 8.5619 8.0551 1.3774 23 6 6.3531 3.8133 0.0004 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4399 2.1638 1.2491 30 1 1.8933 1.6501 2.1392 31 1 1.8935 3.1914 1.2494 32 1 1.8936 3.1912 -1.2495 33 1 0.4399 2.1637 -1.2493 34 1 1.7214 1.8937 -3.2472 35 1 3.9899 0.6026 0.0013 36 1 5.8153 0.4646 0.0139 37 1 8.2723 0.4501 0.0074 38 1 9.5252 2.5599 0.0059 39 1 6.4329 6.8968 -1.6478 40 1 5.8168 4.7507 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179188682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = -99.634194 kcal Electronic energy + Delta-G solvation = -21841.830799 eV Core-core repulsion = 18619.891994 eV Total energy + Delta-G solvation = -3221.938804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34691 -39.32866 -38.16730 -36.35293 -35.61652 -33.85885 -31.89453 -31.28333 -30.06731 -27.27597 -27.09154 -25.67557 -23.92463 -22.80844 -21.06363 -20.36083 -19.47840 -18.28216 -18.09123 -17.02467 -16.99006 -16.48864 -16.03891 -15.83709 -15.66061 -15.07268 -15.00272 -14.46731 -14.26714 -14.07924 -13.78038 -13.45899 -13.23080 -13.02915 -12.87869 -12.83916 -12.80152 -12.73697 -12.47845 -12.20709 -11.86935 -11.69389 -11.54243 -11.46502 -11.07385 -10.99868 -10.37808 -10.03250 -9.45727 -9.37948 -8.66224 -6.38585 0.41239 1.01475 1.35685 1.47491 1.50331 2.14104 2.19659 2.27395 2.80196 3.29012 3.70152 3.75058 3.93284 4.08788 4.26704 4.35905 4.42017 4.49632 4.57529 4.65539 4.68587 4.71390 4.82122 4.90791 5.02616 5.08626 5.11484 5.17751 5.21098 5.31948 5.34836 5.49000 5.52390 5.67460 5.87559 5.94081 6.05238 6.29051 6.53840 6.74990 6.81558 6.87882 6.94884 7.40265 8.30502 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.004728 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.913478 B = 5920.253534 C = 6545.110512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.172 3.828 4 C -0.162 4.162 5 C 0.063 3.937 6 O -0.579 6.579 7 N -0.703 5.703 8 C 0.565 3.435 9 O -0.579 6.579 10 C -0.139 4.139 11 C -0.200 4.200 12 C -0.096 4.096 13 C -0.219 4.219 14 C 0.068 3.932 15 C -0.501 4.501 16 H 0.084 0.916 17 C 0.030 3.970 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.252 1.252 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.130 4.130 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.390 0.610 35 H 0.407 0.593 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.286 0.714 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -10.257 1.513 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.087 3.913 4 C -0.220 4.220 5 C -0.016 4.016 6 O -0.386 6.386 7 N -0.355 5.355 8 C 0.355 3.645 9 O -0.461 6.461 10 C -0.143 4.143 11 C -0.220 4.220 12 C -0.114 4.114 13 C -0.239 4.239 14 C 0.066 3.934 15 C -0.530 4.530 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.176 1.176 21 H -0.196 1.196 22 H -0.185 1.185 23 C -0.151 4.151 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.244 0.756 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.412 -9.793 1.806 15.146 hybrid contribution 0.417 1.197 -0.541 1.378 sum -10.995 -8.596 1.265 14.014 Atomic orbital electron populations 1.21834 0.93153 1.03047 1.02447 1.21656 0.98043 0.92383 1.03139 1.20599 0.78967 0.97882 0.93859 1.22197 1.02560 1.00851 0.96368 1.22648 0.98194 0.95158 0.85580 1.86395 1.78483 1.57053 1.16643 1.45823 1.06834 1.07904 1.74892 1.18590 0.87715 0.83669 0.74555 1.90598 1.70437 1.33108 1.51918 1.19880 0.91917 0.95331 1.07135 1.20843 0.94459 0.95348 1.11313 1.20912 0.93895 0.97540 0.99071 1.21403 0.98820 0.92544 1.11138 1.17945 0.91870 0.93894 0.89728 1.19848 1.02072 0.93638 1.37419 0.89818 1.26851 0.94422 1.05310 0.91853 1.69892 1.19667 1.32802 1.22801 0.85239 0.79392 0.75390 0.79638 1.17628 1.19604 1.18467 1.21429 0.94515 0.96219 1.02905 0.91492 0.92480 0.90841 0.91089 0.90256 0.88910 0.91374 0.93688 0.95172 0.90455 0.76172 0.75551 0.85042 0.84494 0.87381 0.90338 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.21 71.98 0.66 -1.55 16 2 C -0.11 -2.26 4.96 30.60 0.15 -2.11 16 3 C 0.17 4.72 0.62 3.60 0.00 4.73 16 4 C -0.16 -4.34 8.05 71.98 0.58 -3.76 16 5 C 0.06 1.80 5.38 71.98 0.39 2.19 16 6 O -0.58 -16.27 12.85 -148.98 -1.91 -18.18 16 7 N -0.70 -23.54 4.92 -425.70 -2.10 -25.63 16 8 C 0.56 25.30 7.19 86.80 0.62 25.92 16 9 O -0.58 -29.48 12.54 -3.87 -0.05 -29.52 16 10 C -0.14 -6.81 5.87 -20.13 -0.12 -6.93 16 11 C -0.20 -8.23 9.55 22.70 0.22 -8.02 16 12 C -0.10 -3.96 10.01 22.18 0.22 -3.74 16 13 C -0.22 -10.54 9.78 22.77 0.22 -10.32 16 14 C 0.07 3.77 5.57 -21.32 -0.12 3.66 16 15 C -0.50 -27.77 9.05 23.47 0.21 -27.56 16 16 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 17 C 0.03 1.62 5.14 85.25 0.44 2.06 16 18 N -0.83 -46.78 10.96 21.82 0.24 -46.54 16 19 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 20 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 C -0.13 -7.39 8.23 23.01 0.19 -7.20 16 24 H 0.07 0.90 6.43 -2.39 -0.02 0.89 16 25 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.09 1.88 6.43 -2.39 -0.02 1.86 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.57 6.16 -2.39 -0.01 1.56 16 32 H 0.03 1.12 6.16 -2.39 -0.01 1.11 16 33 H 0.08 1.71 6.43 -2.39 -0.02 1.70 16 34 H 0.39 7.92 9.12 -74.06 -0.68 7.24 16 35 H 0.41 11.79 6.49 -92.71 -0.60 11.19 16 36 H 0.13 4.24 6.38 -2.91 -0.02 4.22 16 37 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 40 H 0.10 6.23 5.76 -2.91 -0.02 6.21 16 Total: -1.00 -70.74 321.01 1.69 -69.05 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.20 Total: 41.32 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.67 Total: -32.63 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.86 Total: -72.17 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.96 Total: -47.71 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -70.74 1.69 -69.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179188682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.583 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds