Wall clock time and date at job start Mon Mar 30 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 C 1.53006 * 109.47300 * 240.00794 * 2 1 3 5 5 C 1.53001 * 109.47286 * 59.99153 * 4 2 1 6 6 O 1.42892 * 109.47042 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47489 * 120.00470 * 2 1 3 8 8 C 1.34781 * 119.99667 * 299.99969 * 7 2 1 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 2 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 2 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.08998 * 109.47011 * 299.99538 * 1 2 3 25 25 H 1.09004 * 109.47142 * 59.99918 * 1 2 3 26 26 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47388 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47128 * 300.00737 * 3 2 1 29 29 H 1.09010 * 109.46427 * 60.00247 * 3 2 1 30 30 H 1.09000 * 109.46956 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46583 * 299.99789 * 4 2 1 32 32 H 1.09002 * 109.47357 * 300.00680 * 5 4 2 33 33 H 1.09007 * 109.46474 * 60.00384 * 5 4 2 34 34 H 0.96698 * 114.00093 * 180.02562 * 6 5 4 35 35 H 0.96999 * 120.00641 * 120.00402 * 7 2 1 36 36 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 37 37 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2494 5 6 1.5299 0.0002 -2.4986 6 8 2.0068 -0.6730 -3.6653 7 7 2.0184 -0.6907 1.1960 8 6 1.6928 -0.2302 2.4202 9 8 0.9944 0.7582 2.5319 10 6 2.1863 -0.9271 3.6276 11 6 2.9908 -2.0647 3.4998 12 6 3.4557 -2.7222 4.6245 13 6 3.1320 -2.2653 5.8830 14 6 2.3239 -1.1226 6.0315 15 6 1.9901 -0.6506 7.3223 16 1 2.6269 -0.8822 8.1633 17 6 0.8348 0.1165 7.5098 18 7 -0.1081 0.1114 6.6028 19 14 0.6388 1.1477 9.0550 20 1 1.7432 2.1375 9.1329 21 1 -0.6632 1.8604 9.0126 22 1 0.6806 0.2645 10.2481 23 6 1.8505 -0.4532 4.8903 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 3.1301 -0.7207 -1.2495 31 1 1.6767 -1.7488 -1.2494 32 1 0.4399 0.0001 -2.4985 33 1 1.8933 1.0279 -2.4984 34 1 1.7218 -0.2692 -4.4964 35 1 2.5761 -1.4793 1.1070 36 1 3.2495 -2.4320 2.5176 37 1 4.0765 -3.5993 4.5152 38 1 3.4985 -2.7843 6.7564 39 1 -0.9086 0.6434 6.7325 40 1 1.2331 0.4269 4.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179421268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:33 Heat of formation + Delta-G solvation = -80.084474 kcal Electronic energy + Delta-G solvation = -21429.246085 eV Core-core repulsion = 18208.155020 eV Total energy + Delta-G solvation = -3221.091065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82419 -37.83369 -36.96340 -35.66366 -33.76902 -32.12628 -29.94671 -29.43315 -28.52729 -27.16826 -25.33935 -24.28209 -22.33574 -20.97377 -19.59847 -19.03631 -18.01495 -17.52054 -16.12669 -15.56082 -15.46344 -15.12683 -14.68326 -14.40506 -14.06105 -13.56574 -13.45121 -13.41055 -13.05165 -12.73727 -12.48918 -12.09234 -11.94311 -11.65988 -11.50008 -11.39163 -11.16982 -11.10066 -10.97017 -10.80021 -10.71995 -10.49729 -10.05863 -9.95903 -9.68856 -9.20471 -8.83174 -8.63816 -7.62222 -7.51532 -6.79915 -4.41136 2.22443 2.82717 3.07402 3.09040 3.16951 3.50837 3.87716 3.92267 4.12388 4.63687 4.78760 4.90635 4.99127 5.21075 5.25032 5.35486 5.61590 5.66204 5.77008 5.81394 5.85667 5.93719 6.05394 6.09737 6.12035 6.29083 6.50644 6.56069 6.72579 6.96510 6.99972 7.04014 7.21916 7.38320 7.39038 7.71156 7.77882 7.93425 8.12633 8.20847 8.51070 8.80563 8.84023 8.99398 10.14652 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.004100 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.264628 B = 6827.493943 C = 7577.823789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.180 3.820 3 C -0.167 4.167 4 C -0.122 4.122 5 C 0.077 3.923 6 O -0.577 6.577 7 N -0.730 5.730 8 C 0.569 3.431 9 O -0.542 6.542 10 C -0.129 4.129 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.092 4.092 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.379 0.621 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 0.653 -13.601 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.093 3.907 3 C -0.225 4.225 4 C -0.160 4.160 5 C -0.001 4.001 6 O -0.382 6.382 7 N -0.384 5.384 8 C 0.360 3.640 9 O -0.420 6.420 10 C -0.132 4.132 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.112 4.112 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.225 0.775 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.079 1.076 -13.115 13.203 hybrid contribution -0.155 0.287 0.171 0.368 sum 0.924 1.363 -12.944 13.048 Atomic orbital electron populations 1.22318 0.94490 1.02316 1.03403 1.20049 0.94274 0.92368 0.83982 1.22316 1.00984 0.95796 1.03392 1.21712 1.01940 1.00229 0.92107 1.22278 0.97767 0.95149 0.84930 1.86456 1.77731 1.57745 1.16264 1.46064 1.54956 1.32416 1.04940 1.18761 0.78850 0.83387 0.83052 1.90620 1.38064 1.26488 1.86815 1.19504 1.02911 0.98202 0.92595 1.20352 1.06943 1.00046 0.96526 1.20433 0.99641 0.98458 0.93074 1.21094 1.07772 0.98973 0.95419 1.17596 0.89979 0.89577 0.93242 1.19558 1.06636 1.28241 0.94533 0.90145 1.25958 0.94897 0.95422 0.98268 1.69782 1.05350 1.31642 1.33942 0.86328 0.78416 0.80299 0.81495 1.18728 1.20229 1.18989 1.21628 0.99994 1.00132 0.89450 0.89745 0.92345 0.92690 0.92722 0.92321 0.89813 0.90651 0.90631 0.93005 0.93037 0.77462 0.76645 0.89269 0.88947 0.88663 0.90411 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.05 37.16 0.30 -2.08 16 2 C 0.18 2.49 0.83 -131.82 -0.11 2.38 16 3 C -0.17 -2.32 8.05 37.16 0.30 -2.02 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 5 C 0.08 0.74 6.34 37.16 0.24 0.97 16 6 O -0.58 -5.60 13.66 -35.23 -0.48 -6.08 16 7 N -0.73 -12.05 5.06 -48.53 -0.25 -12.29 16 8 C 0.57 12.13 7.19 -12.31 -0.09 12.04 16 9 O -0.54 -12.83 12.54 5.33 0.07 -12.77 16 10 C -0.13 -3.03 5.87 -105.04 -0.62 -3.64 16 11 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 12 C -0.10 -2.10 10.01 -39.73 -0.40 -2.49 16 13 C -0.21 -5.07 9.78 -38.82 -0.38 -5.45 16 14 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 15 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.65 10.95 55.55 0.61 -20.04 16 19 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 24 H 0.08 1.48 6.17 -51.93 -0.32 1.16 16 25 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 29 H 0.08 1.43 6.16 -51.92 -0.32 1.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 33 H 0.05 0.45 6.43 -51.92 -0.33 0.12 16 34 H 0.38 1.85 9.12 45.56 0.42 2.27 16 35 H 0.40 5.85 6.49 -40.82 -0.26 5.58 16 36 H 0.09 1.56 6.38 -52.48 -0.33 1.23 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.13 3.82 5.74 -52.48 -0.30 3.52 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -30.12 322.20 -7.37 -37.49 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -4.55 Total: 13.33 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.60 Total: -18.21 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.36 Total: -32.34 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.41 Total: -18.85 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.12 -7.37 -37.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179421268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.593 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds