Wall clock time and date at job start Mon Mar 30 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 C 1.53006 * 109.47300 * 240.00794 * 2 1 3 5 5 C 1.53001 * 109.47286 * 59.99153 * 4 2 1 6 6 O 1.42892 * 109.47042 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47489 * 120.00470 * 2 1 3 8 8 C 1.34781 * 119.99667 * 299.99969 * 7 2 1 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 2 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 2 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.08998 * 109.47011 * 299.99538 * 1 2 3 25 25 H 1.09004 * 109.47142 * 59.99918 * 1 2 3 26 26 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47388 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47128 * 300.00737 * 3 2 1 29 29 H 1.09010 * 109.46427 * 60.00247 * 3 2 1 30 30 H 1.09000 * 109.46956 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46583 * 299.99789 * 4 2 1 32 32 H 1.09002 * 109.47357 * 300.00680 * 5 4 2 33 33 H 1.09007 * 109.46474 * 60.00384 * 5 4 2 34 34 H 0.96698 * 114.00093 * 180.02562 * 6 5 4 35 35 H 0.96999 * 120.00641 * 120.00402 * 7 2 1 36 36 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 37 37 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2494 5 6 1.5299 0.0002 -2.4986 6 8 2.0068 -0.6730 -3.6653 7 7 2.0184 -0.6907 1.1960 8 6 1.6928 -0.2302 2.4202 9 8 0.9944 0.7582 2.5319 10 6 2.1863 -0.9271 3.6276 11 6 2.9908 -2.0647 3.4998 12 6 3.4557 -2.7222 4.6245 13 6 3.1320 -2.2653 5.8830 14 6 2.3239 -1.1226 6.0315 15 6 1.9901 -0.6506 7.3223 16 1 2.6269 -0.8822 8.1633 17 6 0.8348 0.1165 7.5098 18 7 -0.1081 0.1114 6.6028 19 14 0.6388 1.1477 9.0550 20 1 1.7432 2.1375 9.1329 21 1 -0.6632 1.8604 9.0126 22 1 0.6806 0.2645 10.2481 23 6 1.8505 -0.4532 4.8903 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 3.1301 -0.7207 -1.2495 31 1 1.6767 -1.7488 -1.2494 32 1 0.4399 0.0001 -2.4985 33 1 1.8933 1.0279 -2.4984 34 1 1.7218 -0.2692 -4.4964 35 1 2.5761 -1.4793 1.1070 36 1 3.2495 -2.4320 2.5176 37 1 4.0765 -3.5993 4.5152 38 1 3.4985 -2.7843 6.7564 39 1 -0.9086 0.6434 6.7325 40 1 1.2331 0.4269 4.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179421268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:32 Heat of formation + Delta-G solvation = -101.428788 kcal Electronic energy + Delta-G solvation = -21430.171644 eV Core-core repulsion = 18208.155020 eV Total energy + Delta-G solvation = -3222.016624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30637 -39.26977 -38.29952 -36.81215 -35.62338 -33.60056 -31.62827 -31.24005 -29.58275 -28.30440 -27.21856 -25.48722 -23.78571 -22.80395 -21.10539 -20.37824 -19.52360 -18.63029 -17.73891 -16.99479 -16.66635 -16.41565 -16.35041 -15.86209 -15.58430 -15.10930 -14.63450 -14.61809 -14.48271 -14.29519 -14.20641 -13.51192 -13.21702 -13.01503 -12.87559 -12.78593 -12.59824 -12.49612 -12.39603 -12.20337 -12.13842 -11.84372 -11.74136 -11.50516 -11.06237 -10.76171 -10.49010 -10.09019 -9.46542 -9.37995 -8.66413 -6.38030 0.40894 1.01854 1.36035 1.47659 1.50578 2.13768 2.19241 2.20738 2.79853 3.30483 3.70406 3.85714 3.86926 4.00332 4.18402 4.27751 4.42067 4.42348 4.53230 4.59790 4.72684 4.73768 4.88206 4.90883 4.91370 4.98802 5.06856 5.08862 5.19066 5.30247 5.38351 5.40773 5.52298 5.65085 5.87689 5.94185 6.05714 6.29421 6.53626 6.73992 6.88093 6.93185 6.95058 7.39306 8.30008 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.004100 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.264628 B = 6827.493943 C = 7577.823789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 C -0.164 4.164 4 C -0.114 4.114 5 C 0.079 3.921 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.565 3.435 9 O -0.573 6.573 10 C -0.140 4.140 11 C -0.201 4.201 12 C -0.096 4.096 13 C -0.220 4.220 14 C 0.067 3.933 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.030 3.970 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.130 4.130 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.400 0.600 35 H 0.409 0.591 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.286 0.714 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -0.399 -15.741 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 C -0.222 4.222 4 C -0.152 4.152 5 C 0.001 3.999 6 O -0.402 6.402 7 N -0.364 5.364 8 C 0.355 3.645 9 O -0.454 6.454 10 C -0.143 4.143 11 C -0.220 4.220 12 C -0.114 4.114 13 C -0.240 4.240 14 C 0.065 3.935 15 C -0.528 4.528 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.150 4.150 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.247 0.753 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.260 -0.006 -15.307 15.473 hybrid contribution -0.432 0.508 0.624 0.913 sum 1.828 0.502 -14.684 14.806 Atomic orbital electron populations 1.22280 0.94731 1.02252 1.02985 1.20273 0.94140 0.92593 0.83913 1.22276 1.01218 0.95656 1.03025 1.21611 1.02099 1.00086 0.91417 1.22218 0.98248 0.95223 0.84224 1.86393 1.78080 1.58427 1.17306 1.45937 1.53898 1.32331 1.04268 1.18580 0.78848 0.83074 0.84047 1.90619 1.39493 1.27872 1.87428 1.19867 1.02842 0.99053 0.92562 1.20856 1.04342 0.98099 0.98747 1.20911 0.99190 0.99391 0.91916 1.21395 1.07033 0.98240 0.97320 1.17947 0.91208 0.90866 0.93493 1.19842 1.07687 1.30428 0.94890 0.89884 1.26844 0.94091 0.96027 1.01510 1.69883 1.05988 1.32862 1.36164 0.85244 0.78385 0.78512 0.77557 1.18525 1.19599 1.17692 1.21434 1.01988 1.00352 0.91258 0.93713 0.89192 0.92547 0.92260 0.89228 0.93625 0.90268 0.90459 0.92072 0.91938 0.75027 0.75340 0.84799 0.84534 0.87486 0.90304 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 8.05 71.98 0.58 -3.91 16 2 C 0.18 4.57 0.83 3.61 0.00 4.58 16 3 C -0.16 -4.34 8.05 71.98 0.58 -3.76 16 4 C -0.11 -2.23 4.75 30.60 0.15 -2.09 16 5 C 0.08 1.22 6.34 71.98 0.46 1.67 16 6 O -0.59 -9.36 13.66 -148.98 -2.03 -11.40 16 7 N -0.71 -22.46 5.06 -425.72 -2.15 -24.62 16 8 C 0.56 24.45 7.19 86.80 0.62 25.07 16 9 O -0.57 -28.58 12.54 -3.85 -0.05 -28.63 16 10 C -0.14 -6.65 5.87 -20.13 -0.12 -6.77 16 11 C -0.20 -8.00 9.55 22.70 0.22 -7.78 16 12 C -0.10 -3.87 10.01 22.17 0.22 -3.65 16 13 C -0.22 -10.44 9.78 22.77 0.22 -10.21 16 14 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 15 C -0.50 -27.45 9.05 23.47 0.21 -27.24 16 16 H 0.08 4.31 7.91 -2.91 -0.02 4.28 16 17 C 0.03 1.60 5.14 85.25 0.44 2.04 16 18 N -0.82 -46.14 10.95 21.82 0.24 -45.90 16 19 Si 0.98 39.86 29.60 68.60 2.03 41.89 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 23 C -0.13 -7.25 8.23 23.01 0.19 -7.06 16 24 H 0.04 1.60 6.17 -2.39 -0.01 1.59 16 25 H 0.09 1.84 6.43 -2.38 -0.02 1.82 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.77 6.43 -2.39 -0.02 1.76 16 29 H 0.04 1.58 6.16 -2.38 -0.01 1.57 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 0.84 6.43 -2.39 -0.02 0.82 16 33 H 0.06 0.83 6.43 -2.38 -0.02 0.82 16 34 H 0.40 2.48 9.12 -74.06 -0.68 1.80 16 35 H 0.41 10.80 6.49 -92.71 -0.60 10.20 16 36 H 0.13 4.08 6.38 -2.91 -0.02 4.06 16 37 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 40 H 0.10 6.18 5.74 -2.91 -0.02 6.16 16 Total: -1.00 -70.37 322.20 1.49 -68.88 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.20 Total: 35.32 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 3.65 Total: -35.55 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.91 Total: -70.52 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.08 Total: -40.03 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -70.37 1.49 -68.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179421268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.549 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds