Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.53002 * 109.46779 * 240.00201 * 2 1 3 5 5 O 1.45200 * 109.47334 * 120.00438 * 2 1 3 6 6 C 1.34225 * 117.00011 * 59.99411 * 5 2 1 7 7 O 1.20827 * 120.00246 * 0.02562 * 6 5 2 8 8 C 1.50699 * 119.99854 * 180.02562 * 6 5 2 9 9 H 1.08999 * 109.47008 * 60.00306 * 8 6 5 10 10 N 1.46507 * 109.47233 * 180.02562 * 8 6 5 11 11 C 1.36936 * 119.99957 * 205.00059 * 10 8 6 12 12 H 1.08001 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.38817 * 119.99709 * 180.02562 * 11 10 8 14 14 N 1.31617 * 119.99464 * 180.27733 * 13 11 10 15 15 Si 1.86800 * 119.99902 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00170 * 15 13 11 17 17 H 1.48499 * 109.47026 * 210.00018 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00054 * 15 13 11 19 19 C 1.50705 * 109.47339 * 300.00350 * 8 6 5 20 20 C 1.38231 * 119.99711 * 279.72980 * 19 8 6 21 21 C 1.38232 * 120.00159 * 179.81088 * 20 19 8 22 22 C 1.38239 * 119.99802 * 0.39332 * 21 20 19 23 23 C 1.38240 * 119.99637 * 359.85596 * 22 21 20 24 24 C 1.38227 * 119.99959 * 99.99886 * 19 8 6 25 25 H 1.08997 * 109.46856 * 299.99637 * 1 2 3 26 26 H 1.08995 * 109.47250 * 59.99625 * 1 2 3 27 27 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46701 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47023 * 300.00079 * 3 2 1 30 30 H 1.08997 * 109.46991 * 60.00446 * 3 2 1 31 31 H 1.08999 * 109.47187 * 299.99496 * 4 2 1 32 32 H 1.09001 * 109.47443 * 59.99833 * 4 2 1 33 33 H 1.08998 * 109.46843 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99595 * 25.00260 * 10 8 6 35 35 H 0.97004 * 119.99499 * 179.72646 * 14 13 11 36 36 H 1.08002 * 120.00152 * 359.97438 * 20 19 8 37 37 H 1.07997 * 120.00649 * 180.22933 * 21 20 19 38 38 H 1.08001 * 120.00483 * 179.84091 * 22 21 20 39 39 H 1.08004 * 119.99839 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00361 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9566 -2.5028 0.5078 8 6 2.1174 -2.7435 2.5440 9 1 1.7532 -2.2584 3.4496 10 7 1.5941 -4.1103 2.4773 11 6 1.4269 -4.8362 3.6262 12 1 1.6812 -4.4014 4.5816 13 6 0.9316 -6.1315 3.5629 14 7 0.7658 -6.8273 4.6678 15 14 0.4925 -6.8837 1.9104 16 1 1.6809 -7.5761 1.3503 17 1 -0.6113 -7.8610 2.0891 18 1 0.0588 -5.8123 0.9783 19 6 3.6237 -2.7833 2.5665 20 6 4.3031 -3.6887 1.7730 21 6 5.6848 -3.7227 1.7907 22 6 6.3871 -2.8568 2.6080 23 6 5.7075 -1.9549 3.4054 24 6 4.3258 -1.9184 3.3848 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 1.3661 -4.5009 1.6192 35 1 0.4159 -7.7310 4.6238 36 1 3.7543 -4.3677 1.1372 37 1 6.2158 -4.4275 1.1680 38 1 7.4667 -2.8850 2.6238 39 1 6.2562 -1.2787 4.0443 40 1 3.7950 -1.2137 4.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180273599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = -45.895339 kcal Electronic energy + Delta-G solvation = -22260.799681 eV Core-core repulsion = 19041.191168 eV Total energy + Delta-G solvation = -3219.608513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64743 -38.78583 -36.92362 -34.84455 -33.91633 -32.03284 -30.52217 -30.02172 -27.42237 -27.37019 -26.90153 -23.20120 -22.35154 -21.94294 -20.48180 -19.29291 -18.17196 -16.87825 -16.43815 -16.01590 -15.72273 -14.96007 -14.74036 -14.35647 -14.15231 -14.11004 -13.58593 -13.10041 -13.01146 -12.71616 -12.53322 -12.37564 -12.19114 -12.05784 -11.87303 -11.82972 -11.47496 -11.34555 -11.07877 -11.01355 -10.76644 -10.62036 -10.23558 -10.18260 -9.82348 -9.61356 -9.10809 -8.47800 -8.27651 -7.46335 -5.85555 -3.24991 1.74087 1.85082 2.61711 2.92592 3.36974 3.44380 3.46940 4.21294 4.54515 4.73196 4.77011 4.90691 4.99360 5.18336 5.22257 5.34840 5.41962 5.43973 5.49079 5.51345 5.59175 5.66388 5.72058 5.85076 5.87474 5.89556 5.95983 5.99447 6.07389 6.28484 6.34232 6.37151 6.47414 6.77261 6.85100 6.90248 7.10918 7.41958 7.83787 8.18990 8.31794 9.07163 9.78296 9.95169 11.31123 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.007571 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.216914 B = 3697.678912 C = 5052.766082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.348 6.348 6 C 0.465 3.535 7 O -0.499 6.499 8 C 0.228 3.772 9 H 0.101 0.899 10 N -0.723 5.723 11 C -0.252 4.252 12 H 0.095 0.905 13 C 0.018 3.982 14 N -0.924 5.924 15 Si 0.874 3.126 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.083 4.083 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.103 4.103 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.374 0.626 35 H 0.262 0.738 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.700 15.269 -8.837 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.265 6.265 6 C 0.307 3.693 7 O -0.386 6.386 8 C 0.115 3.885 9 H 0.119 0.881 10 N -0.367 5.367 11 C -0.381 4.381 12 H 0.113 0.887 13 C -0.179 4.179 14 N -0.570 5.570 15 Si 0.703 3.297 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.122 4.122 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.210 0.790 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.416 15.022 -8.872 18.589 hybrid contribution -0.403 -0.760 -1.163 1.446 sum 6.013 14.262 -10.035 18.446 Atomic orbital electron populations 1.22488 0.94268 1.04929 1.02339 1.22106 0.94262 0.92210 0.83635 1.21821 1.02136 0.92873 1.02696 1.22472 1.01628 1.03278 0.96531 1.86595 1.69721 1.25699 1.44454 1.24345 0.76903 0.80293 0.87762 1.90526 1.35241 1.69901 1.42944 1.18630 0.89864 0.87128 0.92868 0.88110 1.42626 1.77243 1.09242 1.07556 1.18956 1.37743 0.95154 0.86274 0.88720 1.24590 1.00297 0.96521 0.96492 1.69690 1.50407 1.11250 1.25674 0.86691 0.78422 0.79531 0.85081 1.20799 1.21430 1.19339 1.20559 0.95974 0.95688 0.96425 1.20932 0.93819 0.97281 0.98409 1.21057 0.94249 0.99328 0.99867 1.21020 0.99230 0.96799 0.97518 1.20999 0.94298 0.99450 0.99768 1.20962 0.94021 0.98495 0.98677 0.92033 0.91460 0.89629 0.91560 0.90762 0.91545 0.89757 0.91474 0.92080 0.79019 0.92782 0.86416 0.86671 0.86816 0.86592 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 2 C 0.11 1.50 1.13 -90.62 -0.10 1.40 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 5 O -0.35 -5.53 9.81 -39.24 -0.38 -5.92 16 6 C 0.46 8.62 6.61 36.00 0.24 8.86 16 7 O -0.50 -10.16 11.34 -18.75 -0.21 -10.37 16 8 C 0.23 4.53 3.00 -70.23 -0.21 4.32 16 9 H 0.10 1.95 7.94 -51.93 -0.41 1.53 16 10 N -0.72 -17.33 4.03 -55.68 -0.22 -17.55 16 11 C -0.25 -7.00 10.40 -15.06 -0.16 -7.16 16 12 H 0.10 2.78 8.06 -52.49 -0.42 2.35 16 13 C 0.02 0.53 5.50 -17.43 -0.10 0.43 16 14 N -0.92 -28.61 13.97 55.49 0.78 -27.84 16 15 Si 0.87 22.26 27.74 -169.99 -4.71 17.54 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 18 H -0.27 -6.70 6.52 56.52 0.37 -6.33 16 19 C -0.08 -1.53 4.84 -104.63 -0.51 -2.04 16 20 C -0.09 -1.59 9.32 -39.59 -0.37 -1.95 16 21 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 22 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 23 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 24 C -0.10 -1.65 9.67 -39.59 -0.38 -2.03 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.35 5.89 -51.93 -0.31 1.04 16 28 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.31 5.89 -51.93 -0.31 1.00 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.37 9.19 4.85 -40.82 -0.20 9.00 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.12 2.28 7.71 -52.49 -0.40 1.88 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -31.60 331.68 -7.46 -39.06 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.87 Total: 10.18 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.83 Total: -10.11 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.55 Total: -45.39 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.60 Total: -16.29 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.60 -7.46 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180273599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.837 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds