Wall clock time and date at job start Mon Mar 30 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.53002 * 109.46779 * 240.00201 * 2 1 3 5 5 O 1.45200 * 109.47334 * 120.00438 * 2 1 3 6 6 C 1.34225 * 117.00011 * 59.99411 * 5 2 1 7 7 O 1.20827 * 120.00246 * 0.02562 * 6 5 2 8 8 C 1.50699 * 119.99854 * 180.02562 * 6 5 2 9 9 H 1.08999 * 109.47008 * 60.00306 * 8 6 5 10 10 N 1.46507 * 109.47233 * 180.02562 * 8 6 5 11 11 C 1.36936 * 119.99957 * 205.00059 * 10 8 6 12 12 H 1.08001 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.38817 * 119.99709 * 180.02562 * 11 10 8 14 14 N 1.31617 * 119.99464 * 180.27733 * 13 11 10 15 15 Si 1.86800 * 119.99902 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00170 * 15 13 11 17 17 H 1.48499 * 109.47026 * 210.00018 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00054 * 15 13 11 19 19 C 1.50705 * 109.47339 * 300.00350 * 8 6 5 20 20 C 1.38231 * 119.99711 * 279.72980 * 19 8 6 21 21 C 1.38232 * 120.00159 * 179.81088 * 20 19 8 22 22 C 1.38239 * 119.99802 * 0.39332 * 21 20 19 23 23 C 1.38240 * 119.99637 * 359.85596 * 22 21 20 24 24 C 1.38227 * 119.99959 * 99.99886 * 19 8 6 25 25 H 1.08997 * 109.46856 * 299.99637 * 1 2 3 26 26 H 1.08995 * 109.47250 * 59.99625 * 1 2 3 27 27 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46701 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47023 * 300.00079 * 3 2 1 30 30 H 1.08997 * 109.46991 * 60.00446 * 3 2 1 31 31 H 1.08999 * 109.47187 * 299.99496 * 4 2 1 32 32 H 1.09001 * 109.47443 * 59.99833 * 4 2 1 33 33 H 1.08998 * 109.46843 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99595 * 25.00260 * 10 8 6 35 35 H 0.97004 * 119.99499 * 179.72646 * 14 13 11 36 36 H 1.08002 * 120.00152 * 359.97438 * 20 19 8 37 37 H 1.07997 * 120.00649 * 180.22933 * 21 20 19 38 38 H 1.08001 * 120.00483 * 179.84091 * 22 21 20 39 39 H 1.08004 * 119.99839 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00361 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9566 -2.5028 0.5078 8 6 2.1174 -2.7435 2.5440 9 1 1.7532 -2.2584 3.4496 10 7 1.5941 -4.1103 2.4773 11 6 1.4269 -4.8362 3.6262 12 1 1.6812 -4.4014 4.5816 13 6 0.9316 -6.1315 3.5629 14 7 0.7658 -6.8273 4.6678 15 14 0.4925 -6.8837 1.9104 16 1 1.6809 -7.5761 1.3503 17 1 -0.6113 -7.8610 2.0891 18 1 0.0588 -5.8123 0.9783 19 6 3.6237 -2.7833 2.5665 20 6 4.3031 -3.6887 1.7730 21 6 5.6848 -3.7227 1.7907 22 6 6.3871 -2.8568 2.6080 23 6 5.7075 -1.9549 3.4054 24 6 4.3258 -1.9184 3.3848 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7216 -1.2491 34 1 1.3661 -4.5009 1.6192 35 1 0.4159 -7.7310 4.6238 36 1 3.7543 -4.3677 1.1372 37 1 6.2158 -4.4275 1.1680 38 1 7.4667 -2.8850 2.6238 39 1 6.2562 -1.2787 4.0443 40 1 3.7950 -1.2137 4.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180273599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:47 Heat of formation + Delta-G solvation = -63.722949 kcal Electronic energy + Delta-G solvation = -22261.572744 eV Core-core repulsion = 19041.191168 eV Total energy + Delta-G solvation = -3220.381576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01673 -40.05951 -38.27210 -36.58937 -35.10142 -33.94366 -31.89882 -31.56357 -28.50171 -28.39089 -28.28244 -25.08723 -23.66355 -23.24644 -21.83272 -20.72261 -20.03588 -18.21825 -17.69314 -17.55625 -17.06298 -16.64692 -16.06819 -15.94337 -15.56149 -15.26059 -14.86293 -14.59564 -14.42897 -14.18622 -13.85720 -13.63152 -13.40381 -13.30893 -13.09995 -12.98048 -12.93068 -12.85817 -12.49379 -12.27118 -12.25226 -12.05840 -11.89411 -11.78332 -11.39666 -11.26762 -10.99327 -9.73192 -9.67216 -9.42030 -8.09669 -5.46349 0.47446 0.60357 1.16294 1.32323 1.34689 1.42992 1.62315 2.41049 2.93592 3.21975 3.49617 3.64421 3.76975 3.79320 3.95393 3.98851 4.06026 4.25372 4.35738 4.39545 4.57005 4.58537 4.73807 4.74615 4.81239 4.81573 4.87950 4.88617 5.10825 5.14003 5.23473 5.25432 5.30353 5.48869 5.63077 5.64555 5.67865 5.79792 6.11992 6.20547 6.76052 6.95559 7.65160 7.84776 9.10362 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.007571 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.216914 B = 3697.678912 C = 5052.766082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.345 6.345 6 C 0.473 3.527 7 O -0.521 6.521 8 C 0.221 3.779 9 H 0.102 0.898 10 N -0.730 5.730 11 C -0.230 4.230 12 H 0.071 0.929 13 C -0.043 4.043 14 N -0.970 5.970 15 Si 0.936 3.064 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.264 1.264 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.370 0.630 35 H 0.261 0.739 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.518 17.706 -10.040 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.066 3.934 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.261 6.261 6 C 0.316 3.684 7 O -0.410 6.410 8 C 0.111 3.889 9 H 0.119 0.881 10 N -0.374 5.374 11 C -0.360 4.360 12 H 0.089 0.911 13 C -0.236 4.236 14 N -0.620 5.620 15 Si 0.763 3.237 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.130 4.130 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.264 17.525 -10.097 21.849 hybrid contribution -0.861 -1.325 -0.791 1.767 sum 7.403 16.201 -10.888 20.876 Atomic orbital electron populations 1.22466 0.94161 1.03199 1.03975 1.22590 0.94617 0.93779 0.82454 1.21848 1.02383 0.90237 1.04364 1.22442 1.01693 1.01752 0.97709 1.86560 1.69443 1.24083 1.46030 1.23861 0.76358 0.81126 0.87017 1.90530 1.36211 1.70626 1.43649 1.18768 0.91109 0.85323 0.93746 0.88056 1.42519 1.77951 1.10950 1.06027 1.18892 1.35381 0.95152 0.86552 0.91143 1.25236 1.01533 0.97286 0.99539 1.69827 1.52755 1.11673 1.27710 0.85698 0.78115 0.78573 0.81275 1.20165 1.21501 1.18971 1.20358 0.94555 0.97457 0.98287 1.20941 0.95278 0.97830 0.99307 1.21338 0.93199 1.00107 1.00442 1.21475 1.01101 0.95377 0.95939 1.21442 0.93561 0.99442 0.99441 1.21226 0.95247 0.98337 0.98213 0.91638 0.88610 0.92947 0.91196 0.87962 0.91012 0.92914 0.88640 0.91892 0.79481 0.93029 0.88680 0.84762 0.83157 0.82948 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 8.37 71.98 0.60 -3.81 16 2 C 0.10 2.48 1.13 -10.79 -0.01 2.47 16 3 C -0.13 -2.15 8.85 71.98 0.64 -1.52 16 4 C -0.18 -4.35 8.37 71.98 0.60 -3.75 16 5 O -0.34 -10.74 9.81 -51.37 -0.50 -11.24 16 6 C 0.47 17.85 6.61 71.24 0.47 18.32 16 7 O -0.52 -21.82 11.34 21.96 0.25 -21.57 16 8 C 0.22 9.01 3.00 43.50 0.13 9.14 16 9 H 0.10 4.03 7.94 -2.39 -0.02 4.01 16 10 N -0.73 -36.09 4.03 -330.07 -1.33 -37.42 16 11 C -0.23 -13.17 10.40 84.03 0.87 -12.30 16 12 H 0.07 4.31 8.06 -2.91 -0.02 4.29 16 13 C -0.04 -2.57 5.50 84.86 0.47 -2.11 16 14 N -0.97 -61.99 13.97 21.65 0.30 -61.69 16 15 Si 0.94 47.49 27.74 68.60 1.90 49.39 16 16 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 18 H -0.26 -13.10 6.52 99.48 0.65 -12.45 16 19 C -0.10 -3.83 4.84 -19.87 -0.10 -3.92 16 20 C -0.12 -4.27 9.32 22.27 0.21 -4.06 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 22 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 24 C -0.11 -3.39 9.67 22.27 0.22 -3.18 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.65 5.89 -2.39 -0.01 1.64 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.64 5.89 -2.39 -0.01 1.63 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.37 18.71 4.85 -92.71 -0.45 18.26 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.09 3.86 7.71 -2.91 -0.02 3.84 16 37 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.14 3.57 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -70.98 331.68 5.91 -65.06 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.52 Total: 31.56 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 4.77 Total: -14.10 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -1.03 Total: -99.11 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.25 Total: -32.81 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.90 Total: 49.39 kcal Total: -70.98 5.91 -65.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180273599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.341 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds