Wall clock time and date at job start Mon Mar 30 2020 02:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47220 * 2 1 4 4 C 1.53006 * 109.47306 * 240.00218 * 2 1 3 5 5 O 1.42902 * 109.47283 * 120.00128 * 2 1 3 6 6 C 1.42895 * 114.00084 * 59.99751 * 5 2 1 7 7 C 1.50692 * 109.47514 * 180.02562 * 6 5 2 8 8 O 1.21281 * 119.99957 * 354.93703 * 7 6 5 9 9 N 1.34781 * 120.00252 * 174.94023 * 7 6 5 10 10 C 1.37133 * 119.99814 * 5.67183 * 9 7 6 11 11 H 1.07999 * 119.99917 * 55.67589 * 10 9 7 12 12 C 1.38890 * 120.00236 * 235.67268 * 10 9 7 13 13 N 1.31424 * 119.99742 * 9.24774 * 12 10 9 14 14 Si 1.86796 * 120.00216 * 189.25252 * 12 10 9 15 15 H 1.48504 * 109.47020 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47459 * 119.99674 * 14 12 10 17 17 H 1.48499 * 109.46944 * 240.00023 * 14 12 10 18 18 C 1.39790 * 119.99988 * 185.67779 * 9 7 6 19 19 C 1.38953 * 120.07931 * 175.18460 * 18 9 7 20 20 C 1.38084 * 119.92569 * 179.97438 * 19 18 9 21 21 C 1.38310 * 120.07408 * 0.02562 * 20 19 18 22 22 C 1.38304 * 120.15602 * 359.97438 * 21 20 19 23 23 C 1.38083 * 120.07997 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.46786 * 299.99925 * 1 2 3 25 25 H 1.09001 * 109.47149 * 59.99684 * 1 2 3 26 26 H 1.08996 * 109.46648 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47335 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47317 * 300.00212 * 3 2 1 29 29 H 1.09006 * 109.47180 * 60.00316 * 3 2 1 30 30 H 1.08998 * 109.46821 * 300.00230 * 4 2 1 31 31 H 1.09001 * 109.46937 * 59.99967 * 4 2 1 32 32 H 1.09001 * 109.47112 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47144 * 59.99862 * 6 5 2 34 34 H 1.09002 * 109.47323 * 300.00461 * 6 5 2 35 35 H 0.97003 * 119.99822 * 184.98696 * 13 12 10 36 36 H 1.08006 * 120.03500 * 359.70583 * 19 18 9 37 37 H 1.07993 * 119.96221 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.91770 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.95986 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03628 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1410 -2.6444 2.5257 8 8 2.9046 -2.0081 3.2206 9 7 1.7901 -3.8961 2.8814 10 6 1.0210 -4.6580 2.0396 11 1 1.3452 -4.8361 1.0250 12 6 -0.1749 -5.2005 2.4919 13 7 -0.6605 -4.8397 3.6586 14 14 -1.0930 -6.4431 1.4420 15 1 -0.3420 -6.6781 0.1826 16 1 -1.2230 -7.7210 2.1872 17 1 -2.4444 -5.9176 1.1211 18 6 2.2100 -4.4177 4.1085 19 6 1.7676 -5.6685 4.5216 20 6 2.1849 -6.1809 5.7341 21 6 3.0417 -5.4504 6.5373 22 6 3.4840 -4.2052 6.1293 23 6 3.0717 -3.6871 4.9176 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2495 33 1 1.9491 -2.5916 0.4007 34 1 0.4958 -2.0777 1.2907 35 1 -1.4564 -5.2710 4.0071 36 1 1.0947 -6.2374 3.8970 37 1 1.8411 -7.1528 6.0559 38 1 3.3661 -5.8534 7.4853 39 1 4.1534 -3.6376 6.7588 40 1 3.4172 -2.7144 4.5998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182649346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:18 Heat of formation + Delta-G solvation = -37.512405 kcal Electronic energy + Delta-G solvation = -22194.885900 eV Core-core repulsion = 18975.640899 eV Total energy + Delta-G solvation = -3219.245002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.77889 -38.54182 -36.99251 -35.02217 -33.07699 -31.98929 -29.64123 -29.36241 -27.62031 -27.25015 -26.29418 -25.14234 -21.77474 -21.15708 -19.71732 -19.40958 -17.81457 -16.61756 -15.69746 -15.58693 -15.33703 -15.13000 -14.78095 -14.17423 -14.03760 -13.34309 -13.19259 -13.08762 -12.89680 -12.58372 -12.31399 -12.04154 -11.96918 -11.72645 -11.61430 -11.54831 -11.48493 -11.29775 -11.13218 -10.93400 -10.83824 -10.47926 -10.29330 -10.01435 -9.25979 -9.12821 -8.76442 -8.06954 -7.77896 -6.90568 -6.33349 -4.59828 2.43514 2.58103 2.98447 3.08562 3.11740 3.59250 3.82806 3.97099 4.69921 4.79282 5.00513 5.03277 5.13453 5.20638 5.61495 5.64703 5.76133 5.79207 5.84161 5.89273 5.92112 5.96748 6.00723 6.06727 6.10273 6.17711 6.21627 6.41385 6.45701 6.72190 6.75091 6.92222 7.15127 7.20309 7.51998 7.60276 7.63676 7.72016 7.79779 8.03572 8.44138 8.80993 9.23758 9.60564 10.43234 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.006806 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.902085 B = 4113.223661 C = 5579.185701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.359 6.359 6 C 0.062 3.938 7 C 0.497 3.503 8 O -0.548 6.548 9 N -0.384 5.384 10 C -0.373 4.373 11 H 0.093 0.907 12 C 0.056 3.944 13 N -0.838 5.838 14 Si 0.913 3.087 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.186 3.814 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.174 4.174 22 C -0.120 4.120 23 C -0.193 4.193 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.275 0.725 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 3.547 -6.292 7.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.278 6.278 6 C -0.017 4.017 7 C 0.288 3.712 8 O -0.430 6.430 9 N -0.093 5.093 10 C -0.500 4.500 11 H 0.111 0.889 12 C -0.154 4.154 13 N -0.470 5.470 14 Si 0.738 3.262 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.202 1.202 18 C 0.089 3.911 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.193 4.193 22 C -0.139 4.139 23 C -0.213 4.213 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.057 4.024 -5.801 7.139 hybrid contribution -1.030 -1.062 -0.501 1.562 sum 0.027 2.961 -6.302 6.963 Atomic orbital electron populations 1.22449 0.95935 1.03007 1.02369 1.21470 0.93105 0.93121 0.85767 1.21719 1.01878 0.93537 1.02033 1.22446 1.02130 1.01373 0.97726 1.88033 1.74153 1.23400 1.42183 1.21996 1.00225 0.82724 0.96731 1.20503 0.82345 0.81280 0.87035 1.90192 1.37203 1.62035 1.53581 1.40863 1.43379 1.10166 1.14910 1.19382 1.01095 1.33221 0.96334 0.88894 1.25636 0.95735 0.97588 0.96416 1.70047 1.21421 1.37552 1.17950 0.86093 0.79522 0.80237 0.80385 1.18758 1.19977 1.20227 1.18256 0.92955 0.92608 0.87262 1.21009 0.99591 0.95569 0.96521 1.20764 0.99086 0.99173 0.95251 1.20786 1.02213 0.96481 0.99813 1.20869 1.00687 0.95702 0.96593 1.22818 0.99909 1.03768 0.94770 0.91739 0.91936 0.91674 0.91900 0.91537 0.91862 0.91837 0.91878 0.91813 0.90969 0.89846 0.91460 0.85112 0.87786 0.88185 0.87695 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.25 37.16 0.31 -2.11 16 2 C 0.11 1.53 1.14 -90.61 -0.10 1.43 16 3 C -0.13 -1.66 8.84 37.16 0.33 -1.34 16 4 C -0.18 -2.27 8.25 37.16 0.31 -1.97 16 5 O -0.36 -7.01 9.52 -55.09 -0.52 -7.54 16 6 C 0.06 1.27 4.44 36.00 0.16 1.43 16 7 C 0.50 12.24 7.64 -10.99 -0.08 12.16 16 8 O -0.55 -14.42 12.90 -14.30 -0.18 -14.61 16 9 N -0.38 -9.75 2.62 -58.98 -0.15 -9.91 16 10 C -0.37 -9.06 7.61 -14.94 -0.11 -9.17 16 11 H 0.09 2.13 7.85 -52.49 -0.41 1.71 16 12 C 0.06 1.35 3.49 -17.48 -0.06 1.28 16 13 N -0.84 -21.49 11.39 55.49 0.63 -20.86 16 14 Si 0.91 18.19 29.57 -169.99 -5.03 13.16 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 18 C 0.19 4.76 6.05 -83.70 -0.51 4.25 16 19 C -0.11 -2.57 7.87 -39.37 -0.31 -2.88 16 20 C -0.12 -2.64 10.04 -39.61 -0.40 -3.04 16 21 C -0.17 -3.51 10.04 -39.53 -0.40 -3.91 16 22 C -0.12 -2.56 10.04 -39.61 -0.40 -2.95 16 23 C -0.19 -4.73 9.06 -39.37 -0.36 -5.08 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 6.54 -51.93 -0.34 0.58 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.34 6.41 -51.93 -0.33 1.01 16 34 H 0.08 1.70 6.32 -51.93 -0.33 1.37 16 35 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.13 3.24 5.15 -52.48 -0.27 2.97 16 37 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.18 4.45 4.50 -56.37 -0.25 4.20 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -28.79 322.90 -7.66 -36.45 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.64 Total: 10.33 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.63 Total: -11.89 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.48 Total: -30.77 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.71 Total: -22.15 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.79 -7.66 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182649346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.066 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds