Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47197 * 2 1 4 4 C 1.35899 * 117.00202 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05315 * 359.96200 * 4 3 2 6 6 C 1.38126 * 119.94629 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05150 * 359.97305 * 6 5 4 8 8 C 1.38243 * 120.11466 * 0.02562 * 7 6 5 9 9 C 1.38167 * 120.05379 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02373 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46407 * 216.00879 * 10 9 8 12 12 C 1.52999 * 109.47182 * 96.01334 * 10 9 8 13 13 C 1.53002 * 109.47146 * 174.99596 * 12 10 9 14 14 N 1.46491 * 109.47493 * 336.00931 * 10 9 8 15 15 C 1.34777 * 120.00397 * 272.44971 * 14 10 9 16 16 O 1.21688 * 119.99742 * 359.97438 * 15 14 10 17 17 C 1.46374 * 120.00306 * 179.97438 * 15 14 10 18 18 H 1.07994 * 120.00253 * 0.02562 * 17 15 14 19 19 C 1.40051 * 119.99979 * 179.97438 * 17 15 14 20 20 N 1.30670 * 119.99981 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99880 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46621 * 90.00281 * 21 19 17 23 23 H 1.48496 * 109.47014 * 210.00181 * 21 19 17 24 24 H 1.48495 * 109.47254 * 330.00444 * 21 19 17 25 25 H 1.09003 * 109.46737 * 300.00094 * 1 2 3 26 26 H 1.08995 * 109.47223 * 59.99839 * 1 2 3 27 27 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46737 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.46800 * 120.00031 * 2 1 3 30 30 H 1.08003 * 120.03193 * 0.03757 * 5 4 3 31 31 H 1.07994 * 119.97323 * 180.25251 * 6 5 4 32 32 H 1.08001 * 119.93734 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.96925 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.47245 * 294.99538 * 12 10 9 35 35 H 1.09005 * 109.47123 * 54.99353 * 12 10 9 36 36 H 1.08995 * 109.47125 * 59.99847 * 13 12 10 37 37 H 1.09000 * 109.47291 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46968 * 300.00280 * 13 12 10 39 39 H 0.97007 * 119.99982 * 92.44582 * 14 10 9 40 40 H 0.97002 * 120.00121 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0019 6 6 5.5689 0.6093 0.0029 7 6 6.0962 1.8877 0.0022 8 6 5.2552 2.9849 0.0008 9 6 3.8851 2.8065 0.0008 10 6 2.9689 4.0031 -0.0001 11 1 2.0880 3.7864 0.6042 12 6 2.5390 4.3152 -1.4349 13 6 1.5125 5.4497 -1.4244 14 7 3.6738 5.1583 0.5608 15 6 3.6622 5.3741 1.8911 16 8 3.0658 4.6096 2.6263 17 6 4.3670 6.5281 2.4515 18 1 4.8960 7.2069 1.7990 19 6 4.3544 6.7527 3.8339 20 7 3.7140 5.9317 4.6233 21 14 5.2545 8.2250 4.5491 22 1 4.3344 9.3895 4.6024 23 1 5.7224 7.9007 5.9206 24 1 6.4219 8.5553 3.6929 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5729 0.0018 31 1 6.2280 -0.2462 -0.0002 32 1 7.1669 2.0291 0.0026 33 1 5.6696 3.9822 0.0006 34 1 3.4092 4.6180 -2.0172 35 1 2.0938 3.4265 -1.8823 36 1 1.9577 6.3383 -0.9770 37 1 1.2059 5.6718 -2.4465 38 1 0.6423 5.1469 -0.8420 39 1 4.1490 5.7679 -0.0254 40 1 3.7056 6.0870 5.5808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184744938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = -64.982589 kcal Electronic energy + Delta-G solvation = -21954.232277 eV Core-core repulsion = 18733.796079 eV Total energy + Delta-G solvation = -3220.436198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01336 -37.83494 -36.79315 -34.80927 -32.40038 -31.81179 -31.00611 -30.26072 -29.19468 -26.51495 -25.01727 -23.79655 -21.82435 -21.32383 -20.61265 -19.21287 -17.89383 -17.09695 -15.90668 -15.78903 -15.53558 -15.22457 -14.43031 -14.12309 -14.06272 -13.59589 -13.25693 -13.23740 -13.00255 -12.53090 -12.47337 -12.12144 -11.92140 -11.76757 -11.59221 -11.37852 -11.18262 -11.02062 -10.85283 -10.70116 -10.57456 -10.38569 -10.37214 -10.23250 -10.13242 -8.80609 -8.39767 -7.72763 -7.51690 -7.44823 -6.12086 -4.57836 1.76449 1.86075 3.17102 3.23863 3.27047 3.47129 4.14024 4.18335 4.65160 4.88866 4.96535 4.98889 5.15527 5.22820 5.29782 5.39758 5.48184 5.56465 5.59108 5.66243 5.81090 5.82767 5.89586 6.01777 6.06411 6.16517 6.23620 6.29382 6.35538 6.44657 6.60358 6.71115 6.74472 6.88336 7.07736 7.22173 7.48648 7.78003 8.00227 8.18981 8.39822 9.08606 9.62560 10.67467 10.87761 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.005327 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.539671 B = 5255.039411 C = 5559.307581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.308 6.308 4 C 0.132 3.868 5 C -0.215 4.215 6 C -0.095 4.095 7 C -0.160 4.160 8 C -0.062 4.062 9 C -0.103 4.103 10 C 0.199 3.801 11 H 0.091 0.909 12 C -0.119 4.119 13 C -0.146 4.146 14 N -0.758 5.758 15 C 0.557 3.443 16 O -0.574 6.574 17 C -0.546 4.546 18 H 0.066 0.934 19 C 0.089 3.911 20 N -0.768 5.768 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.378 0.622 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -8.884 -11.886 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.222 6.222 4 C 0.086 3.914 5 C -0.234 4.234 6 C -0.113 4.113 7 C -0.179 4.179 8 C -0.080 4.080 9 C -0.105 4.105 10 C 0.092 3.908 11 H 0.109 0.891 12 C -0.157 4.157 13 C -0.203 4.203 14 N -0.412 5.412 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.583 4.583 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.729 3.271 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.210 0.790 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.488 -9.354 -11.128 14.613 hybrid contribution 0.901 0.630 0.235 1.124 sum -0.587 -8.724 -10.893 13.969 Atomic orbital electron populations 1.21758 0.93035 1.02360 1.03700 1.22693 0.95715 0.82721 1.00859 1.86107 1.19192 1.28286 1.88629 1.18776 0.82049 0.93578 0.96964 1.21076 0.94461 0.97420 1.10430 1.20776 0.94155 0.97018 0.99383 1.21002 0.99535 0.92584 1.04748 1.20892 0.91963 0.99250 0.95922 1.19982 0.94917 0.92824 1.02794 1.19283 0.94025 0.84043 0.93456 0.89106 1.21708 0.98935 0.98896 0.96133 1.21710 0.99124 0.99095 1.00419 1.46222 1.58300 1.27713 1.08989 1.18191 0.80738 0.86015 0.79024 1.90611 1.47471 1.49452 1.58114 1.20876 1.34788 1.10410 0.92246 0.91563 1.25682 0.93976 0.96325 0.97102 1.70028 1.32562 1.32936 1.04161 0.86427 0.80190 0.81890 0.78545 1.19814 1.20558 1.18962 0.91289 0.91638 0.90802 0.92568 0.92368 0.86208 0.86585 0.86463 0.85192 0.92288 0.91628 0.91985 0.93537 0.92838 0.79001 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.70 5.46 37.16 0.20 0.90 16 3 O -0.31 -5.31 9.29 -19.42 -0.18 -5.49 16 4 C 0.13 2.40 6.66 -39.22 -0.26 2.14 16 5 C -0.22 -3.39 9.04 -39.43 -0.36 -3.74 16 6 C -0.10 -1.43 10.04 -39.60 -0.40 -1.83 16 7 C -0.16 -2.60 10.04 -39.56 -0.40 -3.00 16 8 C -0.06 -1.15 9.32 -39.61 -0.37 -1.52 16 9 C -0.10 -2.02 5.06 -104.47 -0.53 -2.55 16 10 C 0.20 4.03 1.93 -69.09 -0.13 3.89 16 11 H 0.09 2.18 7.08 -51.93 -0.37 1.81 16 12 C -0.12 -1.89 5.47 -26.73 -0.15 -2.03 16 13 C -0.15 -2.22 9.80 37.16 0.36 -1.85 16 14 N -0.76 -16.89 3.21 -56.35 -0.18 -17.07 16 15 C 0.56 15.83 7.73 -12.99 -0.10 15.73 16 16 O -0.57 -18.86 14.64 5.20 0.08 -18.78 16 17 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 18 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -23.39 11.83 55.55 0.66 -22.74 16 21 Si 0.90 20.37 29.56 -169.99 -5.02 15.35 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 30 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 2.40 7.23 -52.49 -0.38 2.02 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.01 7.75 -51.93 -0.40 0.60 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.38 7.40 8.60 -40.82 -0.35 7.05 16 40 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -35.05 337.25 -7.72 -42.78 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.98 Total: 9.33 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.18 Total: -8.45 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.48 Total: -39.81 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.10 Total: -24.27 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.05 -7.72 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184744938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.204 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds