Wall clock time and date at job start Mon Mar 30 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47197 * 2 1 4 4 C 1.35899 * 117.00202 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05315 * 359.96200 * 4 3 2 6 6 C 1.38126 * 119.94629 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.05150 * 359.97305 * 6 5 4 8 8 C 1.38243 * 120.11466 * 0.02562 * 7 6 5 9 9 C 1.38167 * 120.05379 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02373 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46407 * 216.00879 * 10 9 8 12 12 C 1.52999 * 109.47182 * 96.01334 * 10 9 8 13 13 C 1.53002 * 109.47146 * 174.99596 * 12 10 9 14 14 N 1.46491 * 109.47493 * 336.00931 * 10 9 8 15 15 C 1.34777 * 120.00397 * 272.44971 * 14 10 9 16 16 O 1.21688 * 119.99742 * 359.97438 * 15 14 10 17 17 C 1.46374 * 120.00306 * 179.97438 * 15 14 10 18 18 H 1.07994 * 120.00253 * 0.02562 * 17 15 14 19 19 C 1.40051 * 119.99979 * 179.97438 * 17 15 14 20 20 N 1.30670 * 119.99981 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99880 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46621 * 90.00281 * 21 19 17 23 23 H 1.48496 * 109.47014 * 210.00181 * 21 19 17 24 24 H 1.48495 * 109.47254 * 330.00444 * 21 19 17 25 25 H 1.09003 * 109.46737 * 300.00094 * 1 2 3 26 26 H 1.08995 * 109.47223 * 59.99839 * 1 2 3 27 27 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46737 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.46800 * 120.00031 * 2 1 3 30 30 H 1.08003 * 120.03193 * 0.03757 * 5 4 3 31 31 H 1.07994 * 119.97323 * 180.25251 * 6 5 4 32 32 H 1.08001 * 119.93734 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.96925 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.47245 * 294.99538 * 12 10 9 35 35 H 1.09005 * 109.47123 * 54.99353 * 12 10 9 36 36 H 1.08995 * 109.47125 * 59.99847 * 13 12 10 37 37 H 1.09000 * 109.47291 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46968 * 300.00280 * 13 12 10 39 39 H 0.97007 * 119.99982 * 92.44582 * 14 10 9 40 40 H 0.97002 * 120.00121 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0019 6 6 5.5689 0.6093 0.0029 7 6 6.0962 1.8877 0.0022 8 6 5.2552 2.9849 0.0008 9 6 3.8851 2.8065 0.0008 10 6 2.9689 4.0031 -0.0001 11 1 2.0880 3.7864 0.6042 12 6 2.5390 4.3152 -1.4349 13 6 1.5125 5.4497 -1.4244 14 7 3.6738 5.1583 0.5608 15 6 3.6622 5.3741 1.8911 16 8 3.0658 4.6096 2.6263 17 6 4.3670 6.5281 2.4515 18 1 4.8960 7.2069 1.7990 19 6 4.3544 6.7527 3.8339 20 7 3.7140 5.9317 4.6233 21 14 5.2545 8.2250 4.5491 22 1 4.3344 9.3895 4.6024 23 1 5.7224 7.9007 5.9206 24 1 6.4219 8.5553 3.6929 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5729 0.0018 31 1 6.2280 -0.2462 -0.0002 32 1 7.1669 2.0291 0.0026 33 1 5.6696 3.9822 0.0006 34 1 3.4092 4.6180 -2.0172 35 1 2.0938 3.4265 -1.8823 36 1 1.9577 6.3383 -0.9770 37 1 1.2059 5.6718 -2.4465 38 1 0.6423 5.1469 -0.8420 39 1 4.1490 5.7679 -0.0254 40 1 3.7056 6.0870 5.5808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184744938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:42 Heat of formation + Delta-G solvation = -87.842670 kcal Electronic energy + Delta-G solvation = -21955.223565 eV Core-core repulsion = 18733.796079 eV Total energy + Delta-G solvation = -3221.427486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33220 -39.56042 -38.28410 -36.54670 -34.56284 -32.91268 -32.62191 -31.70783 -30.44443 -28.51333 -26.60589 -24.89685 -23.12822 -22.54328 -22.37827 -20.97298 -19.30310 -18.95964 -17.49389 -17.05700 -17.01554 -16.88135 -15.94548 -15.88259 -15.36518 -15.00188 -14.71495 -14.53132 -14.34226 -14.19926 -14.03269 -13.38914 -13.37310 -13.08733 -13.03759 -12.79472 -12.75838 -12.58779 -12.48763 -12.18237 -12.10431 -11.94108 -11.80376 -11.60672 -11.56386 -10.91173 -9.82393 -9.70672 -9.43434 -9.01083 -8.25293 -6.81801 0.44862 0.55281 1.39857 1.41833 1.56567 2.25663 2.34357 2.52141 2.85382 3.17229 3.63124 3.86724 3.95358 4.05040 4.09347 4.19427 4.23046 4.28156 4.32849 4.39287 4.53456 4.63468 4.68377 4.83865 4.92492 4.93723 4.96415 5.04089 5.13912 5.18918 5.25137 5.34274 5.40649 5.43319 5.53903 5.68194 5.93184 5.94923 6.28774 6.36993 6.55982 6.90339 7.63054 8.56274 8.73699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.005327 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.539671 B = 5255.039411 C = 5559.307581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.114 3.886 5 C -0.214 4.214 6 C -0.089 4.089 7 C -0.166 4.166 8 C -0.083 4.083 9 C -0.137 4.137 10 C 0.204 3.796 11 H 0.042 0.958 12 C -0.107 4.107 13 C -0.143 4.143 14 N -0.741 5.741 15 C 0.544 3.456 16 O -0.630 6.630 17 C -0.572 4.572 18 H 0.087 0.913 19 C 0.029 3.971 20 N -0.824 5.824 21 Si 0.995 3.005 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.248 1.248 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.393 0.607 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -9.277 -13.304 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.069 3.931 5 C -0.233 4.233 6 C -0.107 4.107 7 C -0.184 4.184 8 C -0.102 4.102 9 C -0.139 4.139 10 C 0.097 3.903 11 H 0.060 0.940 12 C -0.145 4.145 13 C -0.200 4.200 14 N -0.395 5.395 15 C 0.348 3.652 16 O -0.516 6.516 17 C -0.609 4.609 18 H 0.105 0.895 19 C -0.185 4.185 20 N -0.454 5.454 21 Si 0.815 3.185 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.171 1.171 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.227 0.773 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.055 -9.747 -12.621 15.947 hybrid contribution 0.378 0.630 0.616 0.959 sum 0.433 -9.117 -12.005 15.080 Atomic orbital electron populations 1.21799 0.91712 1.04189 1.02789 1.23051 0.96856 0.81000 1.02060 1.86090 1.18969 1.31175 1.88620 1.18990 0.82927 0.93862 0.97358 1.21466 0.94698 0.98028 1.09102 1.21259 0.94432 0.97780 0.97183 1.21333 1.00594 0.92468 1.03997 1.20970 0.91998 0.99900 0.97298 1.20001 0.95354 0.93232 1.05337 1.19254 0.92340 0.83853 0.94803 0.93984 1.21634 0.99828 0.99597 0.93394 1.21689 0.98169 0.98043 1.02086 1.45811 1.57723 1.28490 1.07430 1.18535 0.80255 0.85823 0.80564 1.90564 1.49741 1.51233 1.60092 1.21420 1.35187 1.10874 0.93441 0.89484 1.26946 0.94419 0.99851 0.97302 1.70215 1.34584 1.35804 1.04799 0.85058 0.78993 0.76837 0.77627 1.18680 1.20013 1.17079 0.93294 0.91453 0.87528 0.90049 0.92225 0.83211 0.82652 0.83978 0.86107 0.90313 0.90629 0.93387 0.90141 0.94455 0.77329 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.04 1.09 5.46 71.98 0.39 1.48 16 3 O -0.33 -11.79 9.29 -92.42 -0.86 -12.65 16 4 C 0.11 4.20 6.66 22.51 0.15 4.35 16 5 C -0.21 -6.37 9.04 22.37 0.20 -6.17 16 6 C -0.09 -2.44 10.04 22.26 0.22 -2.21 16 7 C -0.17 -5.15 10.04 22.28 0.22 -4.92 16 8 C -0.08 -3.14 9.32 22.25 0.21 -2.93 16 9 C -0.14 -5.55 5.06 -19.77 -0.10 -5.65 16 10 C 0.20 8.67 1.93 44.25 0.09 8.75 16 11 H 0.04 2.19 7.08 -2.39 -0.02 2.17 16 12 C -0.11 -3.41 5.47 30.59 0.17 -3.24 16 13 C -0.14 -4.33 9.80 71.98 0.71 -3.62 16 14 N -0.74 -34.43 3.21 -450.41 -1.45 -35.88 16 15 C 0.54 32.41 7.73 86.36 0.67 33.08 16 16 O -0.63 -43.91 14.64 -4.31 -0.06 -43.97 16 17 C -0.57 -33.05 9.54 24.83 0.24 -32.82 16 18 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 19 C 0.03 1.68 5.50 85.31 0.47 2.15 16 20 N -0.82 -52.02 11.83 21.84 0.26 -51.76 16 21 Si 1.00 41.90 29.56 68.60 2.03 43.93 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 29 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 30 H 0.15 3.42 6.30 -2.91 -0.02 3.40 16 31 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.12 4.58 7.23 -2.91 -0.02 4.56 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.05 1.57 7.75 -2.39 -0.02 1.55 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.39 15.73 8.60 -92.70 -0.80 14.93 16 40 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16 Total: -1.00 -81.35 337.25 4.53 -76.82 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.24 Total: 37.52 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.37 Total: -14.01 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.19 Total: -87.64 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.92 Total: -56.62 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -81.35 4.53 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184744938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.019 kcal (2) G-P(sol) polarization free energy of solvation -81.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds