Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46765 * 2 1 4 4 C 1.35899 * 116.99996 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.05496 * 0.02666 * 4 3 2 6 6 C 1.38129 * 119.94391 * 179.97438 * 5 4 3 7 7 C 1.38279 * 120.05364 * 359.97438 * 6 5 4 8 8 C 1.38253 * 120.11369 * 359.74565 * 7 6 5 9 9 C 1.38162 * 120.05256 * 0.50866 * 8 7 6 10 10 C 1.50699 * 120.02610 * 179.76947 * 9 8 7 11 11 H 1.09004 * 109.46963 * 144.71953 * 10 9 8 12 12 C 1.52997 * 109.47337 * 264.72261 * 10 9 8 13 13 C 1.53000 * 109.47060 * 185.00273 * 12 10 9 14 14 N 1.46497 * 109.47310 * 24.72597 * 10 9 8 15 15 C 1.34777 * 120.00660 * 154.99764 * 14 10 9 16 16 O 1.21685 * 119.99488 * 0.02562 * 15 14 10 17 17 C 1.46371 * 120.00339 * 179.97438 * 15 14 10 18 18 H 1.07995 * 119.99808 * 0.02562 * 17 15 14 19 19 C 1.40046 * 119.99918 * 180.02562 * 17 15 14 20 20 N 1.30674 * 120.00213 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00140 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47524 * 89.99737 * 21 19 17 23 23 H 1.48501 * 109.47350 * 210.00022 * 21 19 17 24 24 H 1.48499 * 109.47085 * 330.00058 * 21 19 17 25 25 H 1.09006 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99650 * 1 2 3 27 27 H 1.08994 * 109.47355 * 60.00285 * 1 2 3 28 28 H 1.09002 * 109.47140 * 240.00232 * 2 1 3 29 29 H 1.08994 * 109.47355 * 119.99715 * 2 1 3 30 30 H 1.07999 * 120.03151 * 359.95001 * 5 4 3 31 31 H 1.08001 * 119.97252 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.94677 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.97027 * 180.25186 * 8 7 6 34 34 H 1.09002 * 109.47153 * 64.99954 * 12 10 9 35 35 H 1.09001 * 109.46832 * 305.00144 * 12 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47194 * 299.99650 * 13 12 10 39 39 H 0.97010 * 119.99804 * 334.99624 * 14 10 9 40 40 H 0.97002 * 120.00255 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1999 0.4260 0.0005 6 6 5.5689 0.6097 0.0005 7 6 6.0961 1.8881 0.0000 8 6 5.2549 2.9852 -0.0058 9 6 3.8849 2.8068 -0.0005 10 6 2.9686 4.0032 -0.0016 11 1 2.0796 3.7794 -0.5914 12 6 2.5580 4.3325 1.4350 13 6 1.5312 5.4667 1.4247 14 7 3.6656 5.1517 -0.5857 15 6 2.9609 6.1506 -1.1532 16 8 1.7454 6.0986 -1.1799 17 6 3.6574 7.2983 -1.7363 18 1 4.7361 7.3445 -1.7121 19 6 2.9250 8.3364 -2.3255 20 7 1.6197 8.2807 -2.3542 21 14 3.8138 9.8009 -3.0703 22 1 4.1048 9.5282 -4.5007 23 1 2.9563 11.0084 -2.9610 24 1 5.0870 10.0303 -2.3412 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.7886 -0.5726 0.0009 31 1 6.2281 -0.2458 0.0009 32 1 7.1668 2.0297 0.0005 33 1 5.6691 3.9826 -0.0102 34 1 3.4359 4.6422 2.0019 35 1 2.1190 3.4492 1.8989 36 1 0.6533 5.1570 0.8579 37 1 1.2391 5.7016 2.4483 38 1 1.9702 6.3500 0.9608 39 1 4.6346 5.1933 -0.5640 40 1 1.1124 8.9996 -2.7626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184744955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -59.295748 kcal Electronic energy + Delta-G solvation = -21852.530546 eV Core-core repulsion = 18632.340948 eV Total energy + Delta-G solvation = -3220.189598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24103 -38.00460 -37.04819 -34.51853 -32.36281 -31.90217 -31.07395 -30.31901 -29.38379 -26.46131 -25.03088 -23.93173 -21.87191 -21.47662 -20.60674 -19.02637 -18.27724 -17.06995 -16.05698 -15.84592 -15.63335 -15.14960 -14.51870 -14.28089 -14.03438 -13.86994 -13.31759 -13.26697 -12.99854 -12.62533 -12.43734 -12.05712 -11.88330 -11.80713 -11.57232 -11.26941 -11.18147 -10.89958 -10.87249 -10.73711 -10.60656 -10.40952 -10.23199 -10.06934 -9.90228 -8.80472 -8.67650 -7.97461 -7.49728 -7.34045 -6.11995 -4.57286 1.47385 1.59313 3.17431 3.24379 3.27399 3.29401 3.90842 4.15290 4.65949 4.78408 4.83476 4.86709 5.02120 5.05216 5.16030 5.20248 5.36430 5.52640 5.59334 5.74582 5.77424 5.83177 5.90330 6.02160 6.05407 6.09689 6.28782 6.42151 6.48609 6.58679 6.67971 6.75644 6.83973 6.94186 7.08080 7.46663 7.49485 7.56592 8.00746 8.20292 8.40222 9.08875 9.62093 10.67025 10.87211 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.004954 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.464375 B = 5650.987140 C = 6399.208542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.306 6.306 4 C 0.134 3.866 5 C -0.211 4.211 6 C -0.093 4.093 7 C -0.156 4.156 8 C -0.077 4.077 9 C -0.104 4.104 10 C 0.200 3.800 11 H 0.089 0.911 12 C -0.116 4.116 13 C -0.138 4.138 14 N -0.762 5.762 15 C 0.558 3.442 16 O -0.571 6.571 17 C -0.547 4.547 18 H 0.065 0.935 19 C 0.089 3.911 20 N -0.767 5.767 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.377 0.623 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -15.341 5.663 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.219 6.219 4 C 0.088 3.912 5 C -0.229 4.229 6 C -0.111 4.111 7 C -0.174 4.174 8 C -0.095 4.095 9 C -0.105 4.105 10 C 0.094 3.906 11 H 0.107 0.893 12 C -0.155 4.155 13 C -0.195 4.195 14 N -0.418 5.418 15 C 0.361 3.639 16 O -0.453 6.453 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.396 5.396 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.190 1.190 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.210 0.790 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.405 -15.137 5.581 16.488 hybrid contribution 1.119 0.380 -0.386 1.243 sum 4.524 -14.757 5.196 16.286 Atomic orbital electron populations 1.21769 0.92802 1.02448 1.03978 1.22739 0.95961 0.82399 1.00901 1.86174 1.18848 1.28564 1.88363 1.18763 0.82387 0.93374 0.96690 1.21139 0.94429 0.97581 1.09800 1.20832 0.94180 0.97141 0.98938 1.21003 0.99649 0.92422 1.04328 1.20871 0.91930 0.99278 0.97457 1.19688 0.94554 0.92763 1.03502 1.19291 0.94010 0.83146 0.94140 0.89274 1.21834 0.98955 0.98541 0.96211 1.21766 0.99220 0.99783 0.98762 1.46349 1.08565 1.21877 1.65029 1.18110 0.87014 0.81400 0.77338 1.90608 1.13826 1.79354 1.61514 1.20881 0.93631 1.03924 1.39967 0.91678 1.25659 0.94518 0.98504 0.94324 1.70018 1.06097 1.30231 1.33275 0.86432 0.80013 0.80878 0.79758 1.19857 1.20544 1.18995 0.90697 0.91401 0.91250 0.92339 0.92378 0.85875 0.86272 0.86100 0.85147 0.93107 0.92972 0.92535 0.95351 0.90581 0.79002 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.62 5.46 37.16 0.20 0.82 16 3 O -0.31 -4.82 9.27 -19.42 -0.18 -5.01 16 4 C 0.13 2.12 6.66 -39.22 -0.26 1.86 16 5 C -0.21 -2.75 9.04 -39.43 -0.36 -3.10 16 6 C -0.09 -1.12 10.04 -39.61 -0.40 -1.52 16 7 C -0.16 -2.00 10.04 -39.56 -0.40 -2.39 16 8 C -0.08 -1.17 9.24 -39.60 -0.37 -1.54 16 9 C -0.10 -1.80 5.07 -104.48 -0.53 -2.33 16 10 C 0.20 4.13 2.19 -69.09 -0.15 3.98 16 11 H 0.09 2.14 7.13 -51.93 -0.37 1.77 16 12 C -0.12 -2.25 5.59 -26.73 -0.15 -2.40 16 13 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 14 N -0.76 -17.32 4.94 -56.35 -0.28 -17.60 16 15 C 0.56 15.65 6.31 -12.99 -0.08 15.57 16 16 O -0.57 -17.85 12.15 5.20 0.06 -17.79 16 17 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 18 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -22.94 11.83 55.55 0.66 -22.28 16 21 Si 0.90 20.29 29.56 -169.99 -5.02 15.26 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.13 1.89 6.06 -52.49 -0.32 1.57 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.31 7.84 -51.93 -0.41 0.90 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.94 5.64 -51.93 -0.29 1.65 16 39 H 0.38 7.59 6.18 -40.82 -0.25 7.34 16 40 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -33.63 328.14 -7.74 -41.36 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.70 Total: 9.31 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.23 Total: -8.21 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.38 Total: -39.88 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.12 Total: -22.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.63 -7.74 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184744955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.932 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds