Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46765 * 2 1 4 4 C 1.35899 * 116.99996 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.05496 * 0.02666 * 4 3 2 6 6 C 1.38129 * 119.94391 * 179.97438 * 5 4 3 7 7 C 1.38279 * 120.05364 * 359.97438 * 6 5 4 8 8 C 1.38253 * 120.11369 * 359.74565 * 7 6 5 9 9 C 1.38162 * 120.05256 * 0.50866 * 8 7 6 10 10 C 1.50699 * 120.02610 * 179.76947 * 9 8 7 11 11 H 1.09004 * 109.46963 * 144.71953 * 10 9 8 12 12 C 1.52997 * 109.47337 * 264.72261 * 10 9 8 13 13 C 1.53000 * 109.47060 * 185.00273 * 12 10 9 14 14 N 1.46497 * 109.47310 * 24.72597 * 10 9 8 15 15 C 1.34777 * 120.00660 * 154.99764 * 14 10 9 16 16 O 1.21685 * 119.99488 * 0.02562 * 15 14 10 17 17 C 1.46371 * 120.00339 * 179.97438 * 15 14 10 18 18 H 1.07995 * 119.99808 * 0.02562 * 17 15 14 19 19 C 1.40046 * 119.99918 * 180.02562 * 17 15 14 20 20 N 1.30674 * 120.00213 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00140 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47524 * 89.99737 * 21 19 17 23 23 H 1.48501 * 109.47350 * 210.00022 * 21 19 17 24 24 H 1.48499 * 109.47085 * 330.00058 * 21 19 17 25 25 H 1.09006 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99650 * 1 2 3 27 27 H 1.08994 * 109.47355 * 60.00285 * 1 2 3 28 28 H 1.09002 * 109.47140 * 240.00232 * 2 1 3 29 29 H 1.08994 * 109.47355 * 119.99715 * 2 1 3 30 30 H 1.07999 * 120.03151 * 359.95001 * 5 4 3 31 31 H 1.08001 * 119.97252 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.94677 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.97027 * 180.25186 * 8 7 6 34 34 H 1.09002 * 109.47153 * 64.99954 * 12 10 9 35 35 H 1.09001 * 109.46832 * 305.00144 * 12 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47194 * 299.99650 * 13 12 10 39 39 H 0.97010 * 119.99804 * 334.99624 * 14 10 9 40 40 H 0.97002 * 120.00255 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1999 0.4260 0.0005 6 6 5.5689 0.6097 0.0005 7 6 6.0961 1.8881 0.0000 8 6 5.2549 2.9852 -0.0058 9 6 3.8849 2.8068 -0.0005 10 6 2.9686 4.0032 -0.0016 11 1 2.0796 3.7794 -0.5914 12 6 2.5580 4.3325 1.4350 13 6 1.5312 5.4667 1.4247 14 7 3.6656 5.1517 -0.5857 15 6 2.9609 6.1506 -1.1532 16 8 1.7454 6.0986 -1.1799 17 6 3.6574 7.2983 -1.7363 18 1 4.7361 7.3445 -1.7121 19 6 2.9250 8.3364 -2.3255 20 7 1.6197 8.2807 -2.3542 21 14 3.8138 9.8009 -3.0703 22 1 4.1048 9.5282 -4.5007 23 1 2.9563 11.0084 -2.9610 24 1 5.0870 10.0303 -2.3412 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.7886 -0.5726 0.0009 31 1 6.2281 -0.2458 0.0009 32 1 7.1668 2.0297 0.0005 33 1 5.6691 3.9826 -0.0102 34 1 3.4359 4.6422 2.0019 35 1 2.1190 3.4492 1.8989 36 1 0.6533 5.1570 0.8579 37 1 1.2391 5.7016 2.4483 38 1 1.9702 6.3500 0.9608 39 1 4.6346 5.1933 -0.5640 40 1 1.1124 8.9996 -2.7626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184744955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = -81.595132 kcal Electronic energy + Delta-G solvation = -21853.497520 eV Core-core repulsion = 18632.340948 eV Total energy + Delta-G solvation = -3221.156572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40044 -39.69072 -38.37239 -36.29525 -34.49508 -32.99135 -32.72968 -31.67141 -30.47371 -28.47361 -26.65843 -24.93532 -23.20956 -22.60607 -22.31047 -20.79139 -19.66042 -18.69752 -17.50425 -17.11416 -17.02167 -16.67326 -15.97857 -15.72802 -15.72405 -15.36189 -14.55058 -14.52336 -14.30319 -14.27085 -13.68436 -13.40941 -13.37423 -13.11235 -13.00441 -12.81485 -12.67445 -12.56097 -12.47256 -12.32160 -12.08316 -11.99816 -11.71506 -11.59781 -11.47353 -10.88967 -9.83154 -9.69480 -9.36371 -9.03197 -8.23414 -6.79724 0.38454 0.52353 1.40435 1.42159 1.56641 2.26458 2.32710 2.54384 2.82569 3.14850 3.67558 3.74354 3.91439 4.05981 4.07401 4.20484 4.25140 4.32340 4.34707 4.40519 4.49519 4.62945 4.66026 4.83221 4.89911 4.92481 4.95282 5.06905 5.09744 5.20030 5.27319 5.35262 5.43068 5.51646 5.58773 5.61949 5.91919 5.95315 6.28499 6.37714 6.54200 6.92000 7.62564 8.57575 8.75157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.004954 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.464375 B = 5650.987140 C = 6399.208542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.118 3.882 5 C -0.207 4.207 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.088 4.088 9 C -0.137 4.137 10 C 0.208 3.792 11 H 0.042 0.958 12 C -0.106 4.106 13 C -0.128 4.128 14 N -0.750 5.750 15 C 0.544 3.456 16 O -0.614 6.614 17 C -0.576 4.576 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.820 5.820 21 Si 0.994 3.006 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.250 1.250 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.390 0.610 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -17.042 6.086 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.253 6.253 4 C 0.072 3.928 5 C -0.226 4.226 6 C -0.099 4.099 7 C -0.171 4.171 8 C -0.106 4.106 9 C -0.138 4.138 10 C 0.102 3.898 11 H 0.060 0.940 12 C -0.145 4.145 13 C -0.185 4.185 14 N -0.406 5.406 15 C 0.348 3.652 16 O -0.500 6.500 17 C -0.613 4.613 18 H 0.101 0.899 19 C -0.183 4.183 20 N -0.450 5.450 21 Si 0.813 3.187 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.173 1.173 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.226 0.774 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.308 -16.882 6.027 19.003 hybrid contribution 0.219 0.756 -0.484 0.924 sum 6.527 -16.126 5.543 18.259 Atomic orbital electron populations 1.21819 0.92320 1.04128 1.02611 1.23060 0.96448 0.80800 1.02485 1.86152 1.19247 1.31404 1.88522 1.18957 0.82913 0.93669 0.97227 1.21484 0.94714 0.97881 1.08502 1.21339 0.94224 0.98103 0.96249 1.21351 1.00853 0.91938 1.02965 1.20966 0.91297 1.00381 0.97951 1.19475 0.94953 0.91980 1.07415 1.19116 0.93173 0.83893 0.93599 0.93997 1.21741 0.98723 0.98110 0.95946 1.21605 0.98588 0.98928 0.99383 1.46043 1.09114 1.21463 1.63945 1.18436 0.86758 0.82555 0.77482 1.90569 1.15704 1.80498 1.63212 1.21412 0.94702 1.04619 1.40564 0.89908 1.26876 0.95241 1.01973 0.94219 1.70193 1.08452 1.31821 1.34543 0.85083 0.78849 0.75857 0.78884 1.18825 1.19896 1.17283 0.87422 0.92268 0.93130 0.91073 0.90179 0.83036 0.82338 0.83099 0.85283 0.91583 0.91241 0.95308 0.92534 0.94695 0.77445 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 10.28 71.98 0.74 -2.17 16 2 C 0.05 0.98 5.46 71.98 0.39 1.37 16 3 O -0.34 -10.84 9.27 -92.41 -0.86 -11.70 16 4 C 0.12 3.67 6.66 22.51 0.15 3.82 16 5 C -0.21 -4.76 9.04 22.37 0.20 -4.55 16 6 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 7 C -0.15 -3.40 10.04 22.28 0.22 -3.18 16 8 C -0.09 -2.56 9.24 22.26 0.21 -2.36 16 9 C -0.14 -4.79 5.07 -19.77 -0.10 -4.89 16 10 C 0.21 9.03 2.19 44.24 0.10 9.12 16 11 H 0.04 2.20 7.13 -2.39 -0.02 2.18 16 12 C -0.11 -4.24 5.59 30.59 0.17 -4.07 16 13 C -0.13 -5.86 8.51 71.98 0.61 -5.25 16 14 N -0.75 -35.63 4.94 -450.41 -2.23 -37.86 16 15 C 0.54 32.18 6.31 86.36 0.55 32.72 16 16 O -0.61 -41.13 12.15 -4.30 -0.05 -41.19 16 17 C -0.58 -33.39 9.54 24.83 0.24 -33.16 16 18 H 0.08 4.33 7.85 -2.91 -0.02 4.30 16 19 C 0.03 1.81 5.50 85.30 0.47 2.28 16 20 N -0.82 -51.11 11.83 21.84 0.26 -50.85 16 21 Si 0.99 41.96 29.56 68.60 2.03 43.99 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 25 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 30 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.13 3.65 6.06 -2.91 -0.02 3.63 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.03 1.42 7.84 -2.39 -0.02 1.41 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.03 1.87 5.64 -2.39 -0.01 1.86 16 39 H 0.39 16.13 6.18 -92.70 -0.57 15.56 16 40 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -78.95 328.14 3.79 -75.15 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.47 Total: 34.13 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.17 Total: -11.69 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.97 Total: -88.70 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.91 Total: -52.88 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -78.95 3.79 -75.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184744955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.440 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds