Wall clock time and date at job start Mon Mar 30 2020 01:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 116.99586 * 2 1 4 4 C 1.38746 * 120.05648 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94224 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05484 * 359.75349 * 5 4 3 7 7 C 1.38244 * 120.11240 * 0.50173 * 6 5 4 8 8 C 1.50697 * 119.97030 * 179.76867 * 7 6 5 9 9 C 1.53006 * 109.47239 * 239.72405 * 8 7 6 10 10 C 1.52999 * 109.46961 * 119.73044 * 8 7 6 11 11 C 1.52997 * 109.47466 * 359.72694 * 8 7 6 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 8 7 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 8 14 14 O 1.21685 * 120.00526 * 0.02562 * 13 12 11 15 15 C 1.46381 * 119.99614 * 180.02562 * 13 12 11 16 16 H 1.07993 * 120.00106 * 0.02562 * 15 13 12 17 17 C 1.40051 * 119.99693 * 180.02562 * 15 13 12 18 18 N 1.30666 * 120.00364 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46872 * 60.00052 * 19 17 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47008 * 300.00175 * 19 17 15 23 23 C 1.38169 * 120.05243 * 359.49490 * 7 6 5 24 24 H 1.09002 * 109.47722 * 300.00067 * 1 2 3 25 25 H 1.09007 * 109.47286 * 60.00552 * 1 2 3 26 26 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03062 * 359.95748 * 4 3 2 28 28 H 1.07998 * 119.96835 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.94090 * 180.27285 * 6 5 4 30 30 H 1.08993 * 109.46955 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47050 * 300.00336 * 9 8 7 32 32 H 1.09001 * 109.47002 * 60.00070 * 9 8 7 33 33 H 1.09002 * 109.46716 * 299.99650 * 10 8 7 34 34 H 1.09000 * 109.47486 * 59.99568 * 10 8 7 35 35 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 38 38 H 0.96996 * 119.99606 * 0.02562 * 12 11 8 39 39 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.02453 * 180.22632 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0062 7 6 4.0559 2.5172 0.0004 8 6 5.5606 2.5984 0.0007 9 6 6.1091 1.9059 -1.2486 10 6 6.1084 1.9053 1.2499 11 6 5.9923 4.0663 0.0012 12 7 7.4552 4.1451 0.0022 13 6 8.0652 5.3469 0.0023 14 8 7.4009 6.3664 0.0020 15 6 9.5269 5.4257 0.0027 16 1 10.1164 4.5209 0.0025 17 6 10.1607 6.6745 0.0033 18 7 9.4475 7.7693 0.0030 19 14 12.0261 6.7751 0.0031 20 1 12.5578 6.1034 -1.2100 21 1 12.4449 8.1997 0.0032 22 1 12.5582 6.1020 1.2151 23 6 3.4310 1.2849 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2127 2.3203 0.0003 28 1 1.3338 4.5114 0.0019 29 1 3.7920 4.6382 0.0111 30 1 7.1975 1.9643 -1.2480 31 1 5.8016 0.8602 -1.2489 32 1 5.7188 2.3997 -2.1385 33 1 5.7177 2.3986 2.1399 34 1 5.8009 0.8595 1.2496 35 1 7.1968 1.9644 1.2504 36 1 5.6016 4.5596 0.8913 37 1 5.6020 4.5600 -0.8887 38 1 7.9846 3.3324 0.0021 39 1 9.8865 8.6343 0.0037 40 1 4.0206 0.3801 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185467161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:43 Heat of formation + Delta-G solvation = -62.143088 kcal Electronic energy + Delta-G solvation = -21232.966442 eV Core-core repulsion = 18012.653374 eV Total energy + Delta-G solvation = -3220.313068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37894 -38.70584 -37.08657 -35.50491 -32.62567 -31.83116 -30.58524 -29.43774 -27.49709 -27.03326 -26.84463 -25.11070 -22.56018 -22.08243 -19.86363 -19.02746 -17.89092 -16.90993 -16.25654 -15.88456 -15.87095 -15.33461 -14.64541 -14.39257 -14.31192 -13.70031 -13.63719 -13.34248 -13.09335 -13.00141 -12.50991 -12.36422 -12.20586 -11.89559 -11.70577 -11.31943 -11.29037 -11.15644 -11.12258 -10.92336 -10.59520 -10.54962 -10.42890 -10.20139 -10.15210 -8.81515 -8.75858 -8.18936 -7.57616 -7.42906 -6.14916 -4.60192 1.34911 1.49583 3.13972 3.17893 3.22664 3.24551 3.79312 4.13294 4.62988 4.63259 4.72856 4.88106 4.91917 4.98818 5.01868 5.22593 5.23848 5.25367 5.42737 5.45600 5.51550 5.66338 5.83331 5.86775 5.96627 6.02830 6.09437 6.20110 6.28145 6.38990 6.39551 6.52828 6.53725 6.62905 6.78180 6.78816 7.33975 7.46458 7.97515 8.15189 8.36808 9.06029 9.58865 10.64305 10.83401 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.003398 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.561764 B = 8238.733592 C = 8681.935029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.217 4.217 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.021 4.021 8 C -0.038 4.038 9 C -0.135 4.135 10 C -0.135 4.135 11 C 0.144 3.856 12 N -0.765 5.765 13 C 0.555 3.445 14 O -0.582 6.582 15 C -0.546 4.546 16 H 0.066 0.934 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.146 4.146 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.379 0.621 39 H 0.268 0.732 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 -14.377 0.000 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.235 4.235 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.021 4.021 8 C -0.039 4.039 9 C -0.193 4.193 10 C -0.193 4.193 11 C 0.019 3.981 12 N -0.421 5.421 13 C 0.359 3.641 14 O -0.465 6.465 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.398 5.398 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.212 0.788 39 H 0.079 0.921 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.599 -13.595 -0.001 19.949 hybrid contribution 0.770 -0.170 -0.001 0.788 sum -13.830 -13.765 -0.002 19.512 Atomic orbital electron populations 1.23007 0.78737 1.03617 1.01265 1.86051 1.21103 1.27226 1.89049 1.18948 0.92241 0.83944 0.97239 1.21166 0.99651 0.92527 1.10196 1.20947 0.94648 0.96860 0.97230 1.21303 0.93644 0.99158 1.02938 1.19595 0.94898 0.92062 0.95561 1.19780 0.90076 0.97235 0.96791 1.21856 1.01530 0.99433 0.96440 1.21857 1.01537 0.99430 0.96439 1.20976 0.84391 0.92092 1.00635 1.46168 1.03926 1.09336 1.82699 1.18183 0.88778 0.80843 0.76289 1.90593 1.66826 1.34223 1.54860 1.20848 0.89984 0.92993 1.54515 0.91566 1.25697 0.99525 0.95297 0.92659 1.70010 1.36280 0.98026 1.35457 0.86456 0.83352 0.77635 0.79404 1.19323 1.20613 1.19318 1.20177 0.90986 0.98250 1.07074 0.92786 0.92794 0.88490 0.85917 0.85832 0.84720 0.91568 0.92749 0.92409 0.92415 0.92743 0.91565 0.93100 0.93100 0.78829 0.92119 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.71 10.50 -19.45 -0.20 -3.91 16 3 C 0.12 1.53 6.69 -39.22 -0.26 1.27 16 4 C -0.22 -2.52 9.04 -39.43 -0.36 -2.88 16 5 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 6 C -0.15 -2.19 8.97 -39.56 -0.36 -2.55 16 7 C -0.02 -0.29 4.76 -104.65 -0.50 -0.79 16 8 C -0.04 -0.57 0.61 -155.66 -0.09 -0.66 16 9 C -0.14 -1.85 8.11 37.16 0.30 -1.54 16 10 C -0.14 -1.85 8.11 37.16 0.30 -1.54 16 11 C 0.14 2.78 3.22 -4.04 -0.01 2.76 16 12 N -0.76 -16.96 4.95 -61.72 -0.31 -17.27 16 13 C 0.56 15.84 7.75 -12.99 -0.10 15.74 16 14 O -0.58 -18.96 15.02 5.20 0.08 -18.88 16 15 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 16 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 18 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 19 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.15 -1.94 8.65 -39.43 -0.34 -2.28 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.12 1.12 6.30 -52.49 -0.33 0.78 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.14 2.07 5.89 -52.49 -0.31 1.76 16 30 H 0.07 0.91 6.86 -51.93 -0.36 0.56 16 31 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.64 7.39 -51.93 -0.38 0.25 16 35 H 0.07 0.92 6.86 -51.93 -0.36 0.56 16 36 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 37 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 38 H 0.38 7.39 6.14 -40.82 -0.25 7.14 16 39 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 40 H 0.13 1.56 7.10 -52.49 -0.37 1.19 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -34.72 326.88 -6.69 -41.40 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.56 Total: 7.19 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.26 Total: -6.09 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.35 Total: -39.86 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.13 Total: -22.79 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.72 -6.69 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185467161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.738 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds