Wall clock time and date at job start Mon Mar 30 2020 01:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 116.99586 * 2 1 4 4 C 1.38746 * 120.05648 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94224 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05484 * 359.75349 * 5 4 3 7 7 C 1.38244 * 120.11240 * 0.50173 * 6 5 4 8 8 C 1.50697 * 119.97030 * 179.76867 * 7 6 5 9 9 C 1.53006 * 109.47239 * 239.72405 * 8 7 6 10 10 C 1.52999 * 109.46961 * 119.73044 * 8 7 6 11 11 C 1.52997 * 109.47466 * 359.72694 * 8 7 6 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 8 7 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 8 14 14 O 1.21685 * 120.00526 * 0.02562 * 13 12 11 15 15 C 1.46381 * 119.99614 * 180.02562 * 13 12 11 16 16 H 1.07993 * 120.00106 * 0.02562 * 15 13 12 17 17 C 1.40051 * 119.99693 * 180.02562 * 15 13 12 18 18 N 1.30666 * 120.00364 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99754 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46872 * 60.00052 * 19 17 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47008 * 300.00175 * 19 17 15 23 23 C 1.38169 * 120.05243 * 359.49490 * 7 6 5 24 24 H 1.09002 * 109.47722 * 300.00067 * 1 2 3 25 25 H 1.09007 * 109.47286 * 60.00552 * 1 2 3 26 26 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03062 * 359.95748 * 4 3 2 28 28 H 1.07998 * 119.96835 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.94090 * 180.27285 * 6 5 4 30 30 H 1.08993 * 109.46955 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47050 * 300.00336 * 9 8 7 32 32 H 1.09001 * 109.47002 * 60.00070 * 9 8 7 33 33 H 1.09002 * 109.46716 * 299.99650 * 10 8 7 34 34 H 1.09000 * 109.47486 * 59.99568 * 10 8 7 35 35 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 38 38 H 0.96996 * 119.99606 * 0.02562 * 12 11 8 39 39 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.02453 * 180.22632 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0062 7 6 4.0559 2.5172 0.0004 8 6 5.5606 2.5984 0.0007 9 6 6.1091 1.9059 -1.2486 10 6 6.1084 1.9053 1.2499 11 6 5.9923 4.0663 0.0012 12 7 7.4552 4.1451 0.0022 13 6 8.0652 5.3469 0.0023 14 8 7.4009 6.3664 0.0020 15 6 9.5269 5.4257 0.0027 16 1 10.1164 4.5209 0.0025 17 6 10.1607 6.6745 0.0033 18 7 9.4475 7.7693 0.0030 19 14 12.0261 6.7751 0.0031 20 1 12.5578 6.1034 -1.2100 21 1 12.4449 8.1997 0.0032 22 1 12.5582 6.1020 1.2151 23 6 3.4310 1.2849 -0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2127 2.3203 0.0003 28 1 1.3338 4.5114 0.0019 29 1 3.7920 4.6382 0.0111 30 1 7.1975 1.9643 -1.2480 31 1 5.8016 0.8602 -1.2489 32 1 5.7188 2.3997 -2.1385 33 1 5.7177 2.3986 2.1399 34 1 5.8009 0.8595 1.2496 35 1 7.1968 1.9644 1.2504 36 1 5.6016 4.5596 0.8913 37 1 5.6020 4.5600 -0.8887 38 1 7.9846 3.3324 0.0021 39 1 9.8865 8.6343 0.0037 40 1 4.0206 0.3801 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185467161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:43 Heat of formation + Delta-G solvation = -85.610737 kcal Electronic energy + Delta-G solvation = -21233.984076 eV Core-core repulsion = 18012.653374 eV Total energy + Delta-G solvation = -3221.330702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38970 -39.97425 -38.79578 -36.88770 -34.69104 -33.69362 -31.63569 -30.50181 -28.96596 -28.15542 -28.02492 -26.77962 -23.75922 -23.09511 -21.72411 -20.33297 -19.46050 -18.33277 -17.42387 -17.15005 -17.05758 -16.61456 -16.06592 -15.93480 -15.83978 -15.03532 -14.93414 -14.50215 -14.46330 -14.27050 -14.13356 -13.61102 -13.22696 -13.10768 -13.08527 -12.79465 -12.70254 -12.59360 -12.58941 -12.19980 -12.12095 -12.05821 -11.81025 -11.65106 -11.39441 -10.90529 -9.86310 -9.76814 -9.45219 -9.15642 -8.27432 -6.83760 0.35234 0.47927 1.41001 1.44811 1.56302 2.25629 2.36068 2.49287 2.77995 3.14015 3.62323 3.63824 3.78113 3.94469 4.03045 4.14005 4.22490 4.34079 4.38376 4.42216 4.55921 4.65250 4.73175 4.75995 4.76822 4.85593 4.96648 4.98322 5.05062 5.13043 5.25817 5.32816 5.33221 5.39141 5.49046 5.70883 5.78314 5.89501 6.25908 6.29236 6.47193 6.88283 7.57952 8.51597 8.69504 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043769 B = 0.003398 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.561764 B = 8238.733592 C = 8681.935029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.080 4.080 6 C -0.179 4.179 7 C -0.030 4.030 8 C -0.027 4.027 9 C -0.133 4.133 10 C -0.133 4.133 11 C 0.151 3.849 12 N -0.749 5.749 13 C 0.537 3.463 14 O -0.635 6.635 15 C -0.573 4.573 16 H 0.088 0.912 17 C 0.027 3.973 18 N -0.823 5.823 19 Si 0.998 3.002 20 H -0.254 1.254 21 H -0.276 1.276 22 H -0.254 1.254 23 C -0.152 4.152 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 -16.901 -0.002 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.074 3.926 4 C -0.231 4.231 5 C -0.098 4.098 6 C -0.197 4.197 7 C -0.030 4.030 8 C -0.027 4.027 9 C -0.190 4.190 10 C -0.190 4.190 11 C 0.026 3.974 12 N -0.404 5.404 13 C 0.341 3.659 14 O -0.522 6.522 15 C -0.610 4.610 16 H 0.107 0.893 17 C -0.187 4.187 18 N -0.453 5.453 19 Si 0.818 3.182 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.178 1.178 23 C -0.170 4.170 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.510 -16.194 -0.002 21.743 hybrid contribution 0.562 0.558 -0.001 0.792 sum -13.948 -15.636 -0.003 20.953 Atomic orbital electron populations 1.23343 0.76502 1.05567 1.02218 1.86041 1.23418 1.26521 1.88719 1.19076 0.92283 0.84788 0.96410 1.21458 1.01141 0.91660 1.08812 1.21161 0.93853 0.98286 0.96497 1.21261 0.94944 0.98390 1.05135 1.19484 0.94195 0.92636 0.96705 1.19644 0.91043 0.93786 0.98249 1.21847 1.01187 1.00783 0.95153 1.21849 1.01192 1.00778 0.95153 1.20973 0.82290 0.95501 0.98599 1.45812 1.05369 1.08283 1.80962 1.18617 0.89532 0.81684 0.76032 1.90547 1.67920 1.36473 1.57284 1.21406 0.90334 0.94466 1.54791 0.89346 1.26995 1.06156 0.94381 0.91218 1.70191 1.39454 0.99066 1.36577 0.85066 0.74808 0.78045 0.80321 1.17776 1.20033 1.17759 1.20246 0.91741 0.97897 1.07157 0.91786 0.91794 0.86233 0.83025 0.84047 0.87145 0.91840 0.89957 0.93452 0.93459 0.89952 0.91839 0.95212 0.95220 0.77013 0.91631 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.80 10.50 -92.51 -0.97 -7.77 16 3 C 0.12 2.78 6.69 22.50 0.15 2.93 16 4 C -0.21 -4.50 9.04 22.37 0.20 -4.30 16 5 C -0.08 -1.95 10.04 22.25 0.22 -1.72 16 6 C -0.18 -5.36 8.97 22.28 0.20 -5.16 16 7 C -0.03 -0.84 4.76 -19.88 -0.09 -0.93 16 8 C -0.03 -0.80 0.61 -52.93 -0.03 -0.83 16 9 C -0.13 -3.49 8.11 71.98 0.58 -2.91 16 10 C -0.13 -3.49 8.11 71.98 0.58 -2.91 16 11 C 0.15 6.16 3.22 86.38 0.28 6.43 16 12 N -0.75 -34.31 4.95 -467.40 -2.32 -36.62 16 13 C 0.54 31.84 7.75 86.36 0.67 32.51 16 14 O -0.63 -43.66 15.02 -4.30 -0.06 -43.72 16 15 C -0.57 -32.88 9.54 24.83 0.24 -32.65 16 16 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 17 C 0.03 1.55 5.50 85.31 0.47 2.02 16 18 N -0.82 -51.30 11.83 21.84 0.26 -51.05 16 19 Si 1.00 41.32 29.56 68.60 2.03 43.34 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 23 C -0.15 -3.78 8.65 22.37 0.19 -3.59 16 24 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 25 H 0.06 0.62 7.66 -2.38 -0.02 0.60 16 26 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.15 2.26 6.30 -2.91 -0.02 2.24 16 28 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.11 3.76 5.89 -2.91 -0.02 3.75 16 30 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 31 H 0.08 1.72 7.39 -2.39 -0.02 1.70 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.72 7.39 -2.39 -0.02 1.70 16 35 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 36 H 0.03 1.33 7.50 -2.39 -0.02 1.31 16 37 H 0.03 1.32 7.52 -2.39 -0.02 1.31 16 38 H 0.39 15.47 6.14 -92.71 -0.57 14.90 16 39 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 40 H 0.14 3.06 7.10 -2.91 -0.02 3.04 16 Total: -1.00 -78.49 326.88 4.19 -74.29 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.48 Total: 31.31 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.78 Total: -9.79 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.06 Total: -87.67 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.04 Total: -51.49 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -78.49 4.19 -74.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185467161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.318 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds