Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.53003 * 109.47073 * 120.00338 * 2 1 3 5 5 C 1.52998 * 109.46682 * 175.00061 * 4 2 1 6 6 O 1.42909 * 109.46930 * 179.97438 * 5 4 2 7 7 C 1.35903 * 116.99847 * 179.97438 * 6 5 4 8 8 C 1.38858 * 119.97138 * 359.72576 * 7 6 5 9 9 C 1.37973 * 120.02757 * 179.76355 * 8 7 6 10 10 C 1.39111 * 119.96688 * 0.51168 * 9 8 7 11 11 N 1.39514 * 120.02522 * 179.72083 * 10 9 8 12 12 C 1.34776 * 120.00053 * 213.24661 * 11 10 9 13 13 O 1.21780 * 119.99914 * 5.13673 * 12 11 10 14 14 C 1.41764 * 120.00411 * 185.13379 * 12 11 10 15 15 H 1.08000 * 119.99833 * 6.25220 * 14 12 11 16 16 C 1.40136 * 120.00425 * 186.25292 * 14 12 11 17 17 N 1.30633 * 120.00078 * 353.72179 * 16 14 12 18 18 Si 1.86802 * 120.00330 * 173.72397 * 16 14 12 19 19 H 1.48493 * 109.47322 * 94.98232 * 18 16 14 20 20 H 1.48501 * 109.47031 * 214.98400 * 18 16 14 21 21 H 1.48501 * 109.46811 * 334.98085 * 18 16 14 22 22 C 1.39099 * 119.94352 * 359.74459 * 10 9 8 23 23 C 1.37970 * 119.97419 * 359.97438 * 22 10 9 24 24 H 1.08999 * 109.47202 * 299.99673 * 1 2 3 25 25 H 1.08993 * 109.47461 * 60.00202 * 1 2 3 26 26 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46576 * 239.99952 * 2 1 3 28 28 H 1.08999 * 109.46860 * 60.00118 * 3 2 1 29 29 H 1.09003 * 109.46729 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46897 * 300.00232 * 3 2 1 31 31 H 1.08998 * 109.47578 * 54.99419 * 4 2 1 32 32 H 1.08997 * 109.47063 * 294.99485 * 4 2 1 33 33 H 1.09001 * 109.47777 * 60.00153 * 5 4 2 34 34 H 1.08995 * 109.47137 * 299.99037 * 5 4 2 35 35 H 1.08001 * 119.99262 * 359.97438 * 8 7 6 36 36 H 1.07996 * 120.01899 * 180.23119 * 9 8 7 37 37 H 0.96998 * 120.00069 * 33.24700 * 11 10 9 38 38 H 0.96991 * 120.00382 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.01452 * 179.97438 * 22 10 9 40 40 H 1.07998 * 119.98738 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 8 4.0413 -1.5043 2.3549 7 6 5.3842 -1.6858 2.4574 8 6 6.2248 -1.2295 1.4507 9 6 7.5887 -1.4088 1.5559 10 6 8.1208 -2.0567 2.6660 11 7 9.4994 -2.2439 2.7708 12 6 9.9858 -3.3452 3.3766 13 8 9.2260 -4.2210 3.7490 14 6 11.3818 -3.4841 3.5802 15 1 12.0462 -2.6664 3.3428 16 6 11.8999 -4.6825 4.0895 17 7 11.0902 -5.6255 4.4915 18 14 13.7483 -4.9315 4.1937 19 1 14.2218 -4.5622 5.5518 20 1 14.0716 -6.3561 3.9271 21 1 14.4208 -4.0741 3.1848 22 6 7.2773 -2.5180 3.6711 23 6 5.9141 -2.3323 3.5663 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6054 -1.7198 1.2952 32 1 1.7517 -0.1584 2.1369 33 1 3.9995 0.1675 1.1420 34 1 3.8531 -1.3940 0.3002 35 1 5.8110 -0.7309 0.5866 36 1 8.2426 -1.0505 0.7746 37 1 10.1078 -1.5814 2.4076 38 1 11.4487 -6.4547 4.8444 39 1 7.6891 -3.0215 4.5333 40 1 5.2589 -2.6907 4.3464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187574853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = -71.464420 kcal Electronic energy + Delta-G solvation = -20490.675916 eV Core-core repulsion = 17269.958644 eV Total energy + Delta-G solvation = -3220.717271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78129 -38.39868 -36.93689 -35.94230 -33.19426 -32.34439 -30.56852 -29.87611 -28.11752 -27.47484 -26.12391 -24.03338 -21.96841 -21.69606 -20.22646 -19.70080 -17.77746 -17.47386 -16.16073 -16.13258 -15.65274 -15.35234 -14.86155 -14.35306 -14.09183 -13.84662 -13.71063 -13.10736 -13.00799 -12.71186 -12.62838 -12.47875 -12.24217 -12.03550 -11.80888 -11.61838 -11.30778 -11.17012 -11.07115 -11.02166 -10.92540 -10.61880 -10.47649 -10.33385 -10.28580 -9.08309 -8.66761 -8.43811 -7.68990 -6.74871 -6.37072 -4.87969 1.94300 2.09499 3.05296 3.13137 3.17032 3.43954 3.99048 4.25502 4.54903 4.57083 4.58820 4.69541 4.75764 4.98978 5.15783 5.22009 5.32671 5.36907 5.38662 5.40426 5.51717 5.59642 5.68607 5.72610 5.74937 5.87313 5.95721 5.99495 6.05291 6.09894 6.31990 6.57728 6.68525 6.83647 7.13478 7.24471 7.33234 7.81313 7.91121 8.06893 8.26935 8.81784 9.32828 10.39889 10.61081 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060138 B = 0.002734 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.480330 B =10237.805141 C =10522.114237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.114 4.114 5 C 0.061 3.939 6 O -0.322 6.322 7 C 0.077 3.923 8 C -0.186 4.186 9 C -0.144 4.144 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.545 3.455 13 O -0.568 6.568 14 C -0.540 4.540 15 H 0.070 0.930 16 C 0.088 3.912 17 N -0.748 5.748 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.091 4.091 23 C -0.128 4.128 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.391 0.609 38 H 0.272 0.728 39 H 0.145 0.855 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 11.407 -7.773 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.152 4.152 5 C -0.015 4.015 6 O -0.237 6.237 7 C 0.032 3.968 8 C -0.205 4.205 9 C -0.165 4.165 10 C 0.065 3.935 11 N -0.347 5.347 12 C 0.353 3.647 13 O -0.452 6.452 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.375 5.375 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.112 4.112 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.224 0.776 38 H 0.083 0.917 39 H 0.163 0.837 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.463 10.484 -7.248 19.278 hybrid contribution 1.373 0.274 -0.477 1.479 sum -13.090 10.758 -7.725 18.622 Atomic orbital electron populations 1.21820 0.94761 1.01921 1.01848 1.21048 0.96045 0.96372 0.97832 1.21942 1.01331 0.95831 1.01899 1.21595 0.93250 1.01719 0.98614 1.22742 0.94833 0.96413 0.87503 1.85980 1.20219 1.74896 1.42592 1.18826 0.81610 1.00227 0.96126 1.20801 0.93779 1.06505 0.99407 1.20661 0.94397 1.04649 0.96825 1.17915 0.85942 0.96853 0.92811 1.44116 1.02640 1.25526 1.62370 1.17048 0.89841 0.79452 0.78310 1.90653 1.59700 1.40524 1.54324 1.20043 0.91843 1.00992 1.44679 0.91183 1.25763 0.99753 0.95203 0.92767 1.70012 1.36028 1.04554 1.26907 0.86287 0.82534 0.78305 0.79300 1.19593 1.20202 1.18666 1.21216 0.91488 0.99324 0.99193 1.20291 0.94946 1.02187 0.97320 0.92546 0.92575 0.92534 0.90956 0.92455 0.92370 0.92638 0.90900 0.90910 0.92312 0.92597 0.86447 0.86423 0.77636 0.91668 0.83721 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.09 -0.71 2.92 -90.62 -0.26 -0.98 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 4 C -0.11 -1.07 5.05 -26.73 -0.14 -1.21 16 5 C 0.06 0.71 4.49 37.16 0.17 0.87 16 6 O -0.32 -5.07 10.13 -19.44 -0.20 -5.27 16 7 C 0.08 1.36 6.69 -39.12 -0.26 1.10 16 8 C -0.19 -3.06 9.03 -39.45 -0.36 -3.42 16 9 C -0.14 -2.58 9.96 -39.35 -0.39 -2.97 16 10 C 0.16 3.51 6.28 -83.72 -0.53 2.99 16 11 N -0.70 -16.06 5.31 -12.40 -0.07 -16.13 16 12 C 0.54 15.21 7.30 -14.91 -0.11 15.10 16 13 O -0.57 -17.85 12.57 5.12 0.06 -17.79 16 14 C -0.54 -14.75 9.31 -37.52 -0.35 -15.10 16 15 H 0.07 1.74 7.86 -52.49 -0.41 1.32 16 16 C 0.09 2.37 5.49 -17.35 -0.10 2.28 16 17 N -0.75 -21.64 11.76 55.55 0.65 -20.99 16 18 Si 0.91 19.37 29.56 -169.99 -5.03 14.35 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.09 -2.01 8.65 -39.36 -0.34 -2.35 16 23 C -0.13 -2.47 9.98 -39.45 -0.39 -2.86 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.63 6.10 -51.93 -0.32 0.32 16 34 H 0.06 0.63 7.64 -51.93 -0.40 0.23 16 35 H 0.12 1.58 6.29 -52.49 -0.33 1.25 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.39 7.63 8.77 -40.82 -0.36 7.27 16 38 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 39 H 0.15 3.58 6.39 -52.48 -0.34 3.24 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -32.58 333.11 -7.79 -40.36 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.85 Total: 8.38 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.38 Total: -7.94 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.59 Total: -37.12 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.13 Total: -23.05 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.58 -7.79 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187574853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.100 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds